G215187


Basic Information

Item Value
gene id G215187
gene name NA
gene type unknown
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 21676271 ~ 22269092 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU254910
ACCAgcagtttgtgttcatttacagcaacagtgatcattttaattctttGAGATGGGACTAGGCAGAGTTTTGAGTTACTTTACTCTAGCAATCTTCATTCAATATTCCTGCAGTCAGACACTGATCCAGTCTGATTCAGTCATCATCAAACCTGATCAGTCTCATAAACTGACCTGCACAGCATCTGGATTGGACTTTACTAGCTATTACATGGCTTGGATCAGACAGGCTCCTGGAAAAGGACTGGAATGGGTTGCATCTATGTACTCTAGCAGTAGTAGCATATATTACTCCAGTGCAGTTAAAGGCCGCTTCACCATCTCCAGAGACAACAGTAAGCTGCAGGTGTATCTGCACATGAACAGCGTGAGGacagaagacacagctgtgtattactgcgcccgacacacacagtgatacttCTCCTTAGACATCAG
>TU254922
ACCAgcagtttgtgttcatttacagcaacagtgatcattttaattctttGAGATGGGACTAGGCAGAGTTTTGAGTTACTTTACTCTAGCAATCTTCATTCAATATTCCTGCAGTCAGACACTGATCGAGTCTGATTCAGTCATCATCAAACCTGATCAGTCTCATAAACTGACCTGCACAGCATCTGGATTGGACTTTAGTGGCTATTACATGGCTTGGATCAGACAGGCTCCTGGAAAAGGACTGGAATTTGTTGCAGCAATGTACTCTAGCAGTTACATATATTACTCCAGTGCAGTTAAAGGCCGCTTCACCATCTCCAGAGACGACAGTAAGCTGCAGGTGTATCTGCACATGAACAGCGTGAGGacagaagacacagctgtgtattactgcgcccg
>TU254923
TTATGCTGATATACATTCAGCTCAACAACATACCAgcagtttgtgttcatttacagcaacagtaatcattttaattctttgAGATGGGACTAGGCAGAGTTTTGAGTTACTTTACTCTAACAATCTTCATTCAATATTCCTGCAGTCAGACACTGATCGAGTCTGATTCAGTCATCATCAAACCTGATCAGTCTCATAAACTGACCTGCACAGCATCTGGATTTAACTTTGGTAGCTACTGGATGGCTTGGATCAGACAGGCTCCTGGAAAAGGACTGGAATTTGTTGCAACTATCGAGTATGATAGTGATAGGAAGTATTACTCCAGTGCAGTTAAAGGCCGTTTTACCATCTCCAGAGACAACAGTAAGCAGCAGGTGTATCTGCACATGAACAGCGTGAGGacagaagacacagctgtgtattactgcgcccga

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU254910 True 438 TUCP 0.44 2 22268552 22269092
TU254922 False 402 TUCP 0.44 2 21703417 21703919
TU254923 False 437 TUCP 0.42 3 21676271 22215359

Neighbor

gene id symbol gene type direction distance location
LOC117598919 NA coding downstream 2941 21672822 ~ 21673330 (-)
b4galt1l b4galt1,LOC108277608,LOC106602599,LOC106602598 coding downstream 62396 21586098 ~ 21613875 (-)
srp72 srp72,LOC107662169,LOC107731365,LOC107552350,LOC107729332 coding downstream 296055 21368754 ~ 21380216 (-)
arl9 arl9 coding downstream 309159 21360562 ~ 21367112 (-)
ints10 ints10,LOC105894096,LOC105894103 coding downstream 474402 21184962 ~ 21201869 (-)
topaz1 topaz1 coding upstream 283632 22552724 ~ 22582102 (-)
trak1b LOC108275079,LOC108414239,LOC107706145 coding upstream 360789 22629881 ~ 22644263 (-)
LOC113546927 ctnnb1,LOC108256545,LOC108414240,LOC103034575,LOC107710337,LOC107706261,LOC107688361,LOC107654753 coding upstream 392468 22661560 ~ 22676748 (-)
LOC113546904 LOC108258503 coding upstream 409072 22678164 ~ 22696823 (-)
cdhr2 NA coding upstream 437462 22706554 ~ 22729853 (-)
G215168 NA non-coding downstream 30377 21645119 ~ 21645894 (-)
G214980 NA non-coding downstream 41407 21634658 ~ 21634864 (-)
G214978 rest,LOC106604639 non-coding downstream 44404 21628129 ~ 21631867 (-)
G214977 NA non-coding downstream 54350 21620678 ~ 21621921 (-)
G214976 NA non-coding downstream 59439 21616602 ~ 21616832 (-)
G215249 NA non-coding upstream 121264 22390356 ~ 22397751 (-)
G215262 NA non-coding upstream 177030 22446122 ~ 22543980 (-)
G215269 NA non-coding upstream 205929 22475021 ~ 22507863 (-)
LOC117598972 NA non-coding upstream 208884 22477976 ~ 22480922 (-)
G215507 NA non-coding upstream 464637 22733729 ~ 22734095 (-)
LOC113528016 thegl other downstream 317081 21352281 ~ 21359190 (-)
slc16a2 LOC108279893,LOC107596364 other downstream 403764 21236802 ~ 21272507 (-)
fgf2 fgf2,LOC107717315 other downstream 648190 21014439 ~ 21028081 (-)
spry1 spry1 other downstream 771000 20900057 ~ 20905271 (-)
hs3st1 hs3st1 other downstream 1462642 20205339 ~ 20213629 (-)
LOC117598948 NA other upstream 1342 22270434 ~ 22270943 (-)
LOC117598813 NA other upstream 5969 22275061 ~ 22275895 (-)
LOC117598921 NA other upstream 7934 22277026 ~ 22277469 (-)
LOC113546926 NA other upstream 43695 22312787 ~ 22313871 (-)
LOC117598862 NA other upstream 50452 22319544 ~ 22320275 (-)

Expression


Co-expression Network