G215295


Basic Information

Item Value
gene id G215295
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 22827021 ~ 22830832 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU255085
attttactgttttttttttaatactcaaaattaaaaaaaaacatccattttaCAAACAACTTCAGGAcgaaaaaaccaaaaacaaacgaaaaaaaaaaaaaaaacactgcaaaaattcgGAAAAAACTTAATGCTGTAATCGATGAACGATGCACCAAACACTTCACAGGTCAAACTTGGACAAAtgtaacacctttttttttttctttttcttttttttttttttggcttgatattaaaatatcatttacatttacttccTAAGTGCTAGATGACAAATAGTTCAGTTGTGTTCCTGGTGAAATGTCCGTTATTAAAATGCTGCACAGTTGGAAATTTACAGCGATCTGATTGGACAGGTTCATACTGACGGTCGGAGGAACGTTTAATGTGAAATGTTCGGACGACGTTAAAGGAAAGAAACTCGTCTCAAATGGCTCATAAACTTTGGTTACCGACTTCCAGAGATGTGTACGTGTAGCGCCAGCATCAGAACTGGAATAGAAAAGATTCGTATATACAATGTGAATTGTATAGATgaacgttttttgttttttgttttttttaaataaaaaagaaactcaaACTCATGAGGTTCCACTAAAAGCTGGACACCGTGTTTATTATGCATACAGCTGAACGTAACGCTGAATTCTGACCGTGAAGCACTCTTGAACAGTTCATTAATTACAggttaaaggagcagtttgggAGAAATCATATTCCCATTCCAAATGTAGCTGATCAGTCAAAATTTTGCGAAAAGTCCCATGTAGCTAAAAAGTAACAAACCTTTTGAACACTCATGCTGTAATaatcatgcaaataaaaaaaggtgtGATGACATCTACAACATCTAACACTTGGTGCGTTAGTTTTTTAAGTTGTTTATGAACAAATAATATTGCAGATGTGTCCGATGTTAGCATGCTAACGGGTGGTCACGTGGCAGCCGCGTGGTTATGGTGCAAAAGCGAAAGAACATCGAACTTGTTTTGGCTGATGTGTTATGTATGAGgaattctttgtttttcatcCACAAACTGCTCGTTTGAAACCTAGATGTTGCAAATAAAACCGTTCTGATTCATAATAGCCGACGAACGTGTACGTGTTCTTGGGATAAGTTGCGTCATTGCGTTGTtgaggctgctttcacactttcacacgcCAGCGTACGTTTTTATGTGCGATCCTTAGAAAGTGGGATGTTTCTAAACTAGAAAaagaacattacattttttttttcacgaaaacaaacatggagggcAAAGTGCTGCGGAAAGCTAGCCTTGTCGTGAATATATGTCAGTGCTAATATTTTGATGATGTGGTGTAACTAAACAGAACAGCGTGTGTATTTTTGGGATATTCACCTGGCTGTCATGTGACACGTATCCCATGTTAACTGTAGCAGCTCAAATTGTCTTGaatttcatctgcattactgaaTTATAATAACTCTCTAGGACTGGGAACACAAAAGTCGCCCAAAACAGCGAGTTTTctaaagtgtgaaagcagcctgaGAAGAGAACTTCTTGCTTGATATCCCCTGGTATATTACTGTAATTTGATCATgtgtcaaatatttattaaagacatttttttcccgATGCTACACAGCTTTACGATTCTCAATCAGGCTTCTCAGTTCTATTTTTTTGGCTCATGGAGAATTTCAGATTGATTTGGGAATTTAAAGTATTACAGAATGCCCTAAAGCCAAAATAGCTCTGTTCTGCAAACAAATATGATCAACATTTGATTGGatagattacaaaataaatttaaaaaaggatagTATTGCATTTTATACTAAATTCCTCACTCTTTTAGAGCgttctttataaaaatgatcaaattagaTGCcgtggttttaaaaaaaaacgagtgATGTTTTGTTTCTTCAGATTTCTaggtaaaacaaaatgaaaacaaattccCTGAAAATATTTATCAACATTATACTGAATGTTCTCTTTCCTCTCAGCTACGTCTTGTAAAGATCCTGCGTATGTTCACTTTATTCCTCACACATATCAGGACCGTGTTCTTTATTATCGATGCATTTGGGAATTTGTGTTTATGGCTTTGGAAAAGCAGTGCAGCCGCGTTACGGTGCCTGAAGAGGGTCAAAGGGTAAAGAAAAGCGGACGGcttgcacacacagacacttctCTTTGTTTGATCCGTTTCGGCTGGTTATGAaactgaaatcattttttttttgctatttagtTCTCATATTTGAGTGACAGTCACATTACTGACACGCTGGTGGTCGTATTAAAGCAGCACGGCTGCCTTCATACCTCCTTTTCACAACGCTCTCTACTTCTCTATCATGTTAACTTCATAAATTTCATCAGGTTTAAATGGGAAATCTCATTTATACCTTCAATAAAGAAACTTGTTACACCTTCCAAATGTGGTATCGTAAAACATTTTTGCGTTTGCATATTGCTAAATGCCACACAGTTACAAAACGCACGTTGCTaaaatgtgaatgagtgtctCAACGGCAACACGAAAAATTTGTAACCGCAATTTCATCTGATTTCTTTAGGGAATTAATCCTACAGGGGTGGACGAATCATAAATCCGTTAGCTAGCAAGCGAAAGTAACTAGTGCAATGTGCTGGCCAGTCcgatgttttggttgcctggaaactgACTAGGgttaaaaagtggtagctaacgtAATATGATCACGTTCAACGTGCTAGTTTGCTAGATACGTGCATTAATACAGGGAAATGAACGAAATTCTGCATTTTTTAACGTAGAACATCACGTTTGTGGCcttgacaaaaagtcagcaagctATTGGTGAACGTTTTGGATACGGGCCGTGGTGTTCCGCCCTCAGACTGCACGCAGAATCAATTATTCGAGTCTGGCTAGCATGTTCACTTTCTCTCAGTATGCTTACCTGCAAAGTGACGTATAGTTCATACTGAGATTCGGAACAAGTAGCACGGACTATAGTTACCAGATCGAGGTGCGTTTAAGTTTGAATATAGCTGCatagcaaataaaaacaataaggagtacggtttattttcttttcctggtTGATAAATCTATTTGATTGATTTGTCCACTGATTTGTccactgatttgtccaccctgtCCTAGCTTTGTCCCAGCTTTTGAGTTGCCTTCTTACAAATTTCGATCCTGATTTTCGTACTTATTTTCGAttccagtttttaaaaaatcagatagAAGTGTGGCGAACGCAACGGTGAATTAAAAAAGTGTGATTCAAGACAGGGCCGGAACAACATCTGTGAGTGTTCTATACATCGTTGCTGGACGTAAATGtactttgcatgtgtgtgtttagtgtgtttatagtCACAGCACACCTAACTTGTGGCTAAACCCTGTTAGATTAGTCCTTCCTCTATTAGACCTTTTCGATCCCCAGCATTTAGAGGCCTTCATTCCTGgctctgtttgtgtatgtgtgtgtaattatgtgtgtgtgtgtgtgtgtgtgtgtggatgtgttagCACTCCCCGTCGGACACCAGGAATATCATGGCTTCCTGTTTGCCGATCTCGGCCATGATGGCGGCGAGCTGGTTCAGGTTGCCGCTGTGGAAATGCTGAGCTTCCCAAAGGTCCAGGATCGTAGACGTGGGACTCGCTTTGGACGCGAAGAAGCTCATGTGTCtgcatggagagagacagaagcaaGTTTTCAGATTTCCGTGCAGGAAAGCATTTGTTTAACAGGATTGTTACAGTGTGAACAGGAGTGCGATTTTACTGTTGTTTAGTTTACAGAGACGAGGGTTTAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU255085 True 3812 lncRNA 0.38 1 22827021 22830832

Neighbor

gene id symbol gene type direction distance location
pdlim7 pdlim7 coding upstream 1788 22781366 ~ 22825233 (+)
rnf44 rnf44 coding upstream 72589 22733735 ~ 22754432 (+)
cckb LOC108274239 coding upstream 205041 22614859 ~ 22621980 (+)
LOC113546929 NA coding upstream 278155 22537502 ~ 22548866 (+)
LOC117598775 NA coding upstream 1158139 21668341 ~ 21668882 (+)
LOC113546949 LOC108277208 coding downstream 310882 23141714 ~ 23143760 (+)
LOC113546924 NA coding downstream 316365 23147197 ~ 23156708 (+)
LOC113546950 NA coding downstream 329631 23160463 ~ 23163243 (+)
LOC113546948 LOC108277208 coding downstream 337512 23168344 ~ 23170849 (+)
atoh1b LOC108277232 coding downstream 452416 23283248 ~ 23285620 (+)
G215343 NA non-coding upstream 47780 22778616 ~ 22779241 (+)
G215336 NA non-coding upstream 91035 22735771 ~ 22735986 (+)
G215294 NA non-coding upstream 100375 22724687 ~ 22726646 (+)
LOC117598850 NA non-coding upstream 291245 22495208 ~ 22535776 (+)
LOC117595678 NA non-coding upstream 325651 22500883 ~ 22501370 (+)
G215350 NA non-coding downstream 10512 22841344 ~ 22909078 (+)
G215360 unc5a,LOC107750348 non-coding downstream 23413 22854245 ~ 22857421 (+)
G215425 unc5a,LOC107677380,LOC107595741 non-coding downstream 98656 22929488 ~ 22929797 (+)
G215476 NA non-coding downstream 195611 23026443 ~ 23027619 (+)
G215479 NA non-coding downstream 204623 23035455 ~ 23035659 (+)
trnat-cgu_7 NA other upstream 46445 22780286 ~ 22780576 (+)
higd2a higd2a other upstream 57385 22765814 ~ 22769636 (+)
LOC113546930 LOC108275153 other upstream 336110 22463100 ~ 22490911 (+)
LOC113546936 NA other upstream 356343 22470179 ~ 22470678 (+)
LOC117598940 NA other upstream 429451 22397112 ~ 22397570 (+)
G215347 NA other downstream 4832 22835664 ~ 22835902 (+)
G215621 LOC108277208 other downstream 306414 23137246 ~ 23170553 (+)
LOC113546919 LOC108278588 other downstream 900622 23731454 ~ 23741390 (+)
igfbp7 igfbp7 other downstream 911650 23742482 ~ 23748131 (+)
fbxl16 fbxl16,LOC107738613,LOC107685932,LOC107568127,LOC107733860,LOC107568165,LOC107690242 other downstream 1063415 23894247 ~ 23920403 (+)

Expression


Co-expression Network