higd2a (higd2a)


Basic Information

Item Value
gene id higd2a
gene name higd2a
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 22765814 ~ 22769636 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU255135
GTACAGACAGGCAGGTGCGTTGTGTTTCGTGTTGGGGTAGATGGTCCATCATGGCGGCAGCGTCCACTCCTGTAGAGCAAGCTTCAGTGGCGGAAACAGCGCCGCCGATAGCCGCTGCTTTTGACCTGTCAGACCCGCCGGTTATCGACGGCTTCACGCCTCTTTCCCGGCCCAGAGAAGAGGCTTTTAAAGACAAGTTCATCcggaaaaccaaagaaaacccGTTTGTCCCTATCGGTTGCCTGGGTACTGCAGGAGCACTGATCTACGGCCTCCGAGCCTTCAAACAGGGGAAGACACGCCAGTCCCAGTTGCTCATGCGCACTCGCATCTTCGCTCAAGGATTCACCGTCGTGGCCATTATAGTGGGCGTCGCTGCAACGGCACTAAAACCCAGACAGTGAAACGAGGGTTCAGAGTTCAAACCTGGCCGCACCTTTTCCTCATGGCTTGTGTGACCGACTGCCTGATCTAATAAAGTTTTTCTCGGTTGTCTTCGGTCGGCGAGTGTTGCGAGAGTGAGGAACCCTGCTGCAGTTAGGCATGTTAGTTATACATTGTTGTATAttatcttttttccatttaagaTTTCTTGTAAAATCTTGTAATAGAATGAGAAGAGGGGAATGTCAAACGTTCCCCTTGTGAAAATGAAcaggccaaaaataaaatgtttgtatgtttgatgGATGAAGTTTGCTTCTTGAGTTATGACACTGGAGATATGACATTAACCCTAAGTTCACACTAGCCAGCAACAAAGCAATCATGATTTCAGATAAAAAAGCGACGTTTGAATTGATCTTTCAAATTAGATATGACTCcttaaagcaacaaatccaaactctcggctcaaatgattccttgGAGCAATCCAATGGCACGTGTGGTCTGAcctttcttcagttccccactcacaacctGCAATTAgatcccatttactgtttggcGCACAGAAATGGAAGAACAAGTCGAATCTGACGGGTATGCCTCCGCCAGCAAGTCTAGTCCTGtgtgttactaatttgtatgtcACAACTACCCTTTATATCAAAcattatttcagacatttggCCTTGCTTGGATcatatccaaaatctaatcagttcatctgtgGGTTACAATGATGATTCCGtttaaatcctacaaacatttgttCTTGAGCTGATATGCTAAAGAGAATCTCGAATCCCAGACAGACACACGGACGGATTCAAAAATGGGCCTTGAGTTCTTGAATGCACTAGTAACATCTTTGTATGACGTaatgaaaacataatgaaaacaCCCCCTCTCAGTGGTGGAGGCATAAAAACTTATAACCGTGGCTTCATTTTATCTTGTCGTATACAACCATTTCTCATCAGAATTAAAATAACTATACAAACTACAAACAACTCGAGCGGCGTgacgcttgctagtgtgaacaaaGAGTAAGAGATATGAAAGCTATTAGTTTGGAATTACTTCATTTTTGGTTGCACTATTGCTATCACTAAAAGGTCATGATGTTTTTTCACAATGCCAGTTGAAAAAAGTGGAATAAACAATCTCAA
>XM_026947039.2
GTACAGACAGGCAGGTGCGTTGTGTTTCGTGTTGGGGTAGATGGTCCATCATGGCGGCAGCGTCCACTCCTGTAGAGCAAGCTTCAGTGGCGGAAACAGCGCCGCCGATAGCCGCTGCTTTTGACCTGTCAGACCCGCCGGTTATCGACGGCTTCACGCCTCTTTCCCGGCCCAGAGAAGAGGCTTTTAAAGACAAGTTCATCcggaaaaccaaagaaaacccGTTTGTCCCTATCGGTTGCCTGGGTACTGCAGGAGCACTGATCTACGGCCTCCGAGCCTTCAAACAGGGGAAGACACGCCAGTCCCAGTTGCTCATGCGCACTCGCATCTTCGCTCAAGGATTCACCGTCGTGGCCATTATAGTGGGCGTCGCTGCAACGGCACTAAAACCCAGACAGTGAAACGAGGGTTCAGAGTTCAAACCTGGCCGCACCTTTTCCTCATGGCTTGTGTGACCGACTGCCTGATCTAATAAAGTTTTTCTCGGTTGTCTTCGGTCGGCGAGTGTTGCGAGAGTGAGGAACCCTGCTGCAGTTAGGCATGTTAGTTATACATTGTTGTATAttatcttttttccatttaagaTTTCTTGTAAAATCTTGTAATAGAATGAGAAGAGGGGAATGTCAAACGTTCCCCTTGTGAAAATGAAcaggccaaaaataaaatgtttgtatgtttgatgGATGAAGTTTGCTTCTTGAGTTATGACACTGGAGATATGACATTAACCCTAAGTTCACACTAGCCAGCAACAAAGCAATCATGATTTCAGATAAAAAAGCGACGTTTGAATTGATCTTTCAAATTAGATATGACTCcttaaagcaacaaatccaaactctcggctcaaatgattccttgGAGCAATCCAATGGCACGTGTGGTCTGAcctttcttcagttccccactcacaacctGCAATTAgatcccatttactgtttggcGCACAGAAATGGAAGAACAAGTCGAATCTGACGGGTATGCCTCCGCCAGCAAGTCTAGTCCTGtgtgttactaatttgtatgtcACAACTACCCTTTATATCAAAcattatttcagacatttggCCTTGCTTGGATcatatccaaaatctaatcagttcatctgtgGGTTACAATGATGATTCCGtttaaatcctacaaacatttgttCTTGAGCTGATATGCTAAAGAGAATCTCGAATCCCAGACAGACACACGGACGGATTCAAAAATGGGCCTTGAGTTCTTGAATGCACTAGTAACATCTTTGTATGACGTaatgaaaacataatgaaaacaCCCCCTCTCAGTGGTGGAGGCATAAAAACTTATAACCGTGGCTTCATTTTATCTTGTCGTATACAACCATTTCTCATCAGAATTAAAATAACTATACAAACTACAAACAACTCGAGCGGCGTgacgcttgctagtgtgaacaaaGAGTAAGAGATATGAAAGCTATTAGTTTGGAATTACTTCATTTTTGGTTGCACTATTGCTATCACTAAAAGGTCATGATGTTTTTTCACAATGCCAGTTGAAAAAAGTGGAATAAACAATCTCAACCATGAAAA

Function

symbol description
higd2a Predicted to be involved in mitochondrial respirasome assembly. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in mitochondrion. Orthologous to several human genes including HIGD2A (HIG1 hypoxia inducible domain family member 2A).

NR:

description
HIG1 domain family member 2A-like

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU255135 False 1556 TUCP 0.43 2 22765814 22769627
XM_026947039.2 True 1565 mRNA 0.43 2 22765814 22769636

Neighbor

gene id symbol gene type direction distance location
rnf44 rnf44 coding upstream 11382 22733735 ~ 22754432 (+)
cckb LOC108274239 coding upstream 143834 22614859 ~ 22621980 (+)
LOC113546929 NA coding upstream 216948 22537502 ~ 22548866 (+)
LOC117598775 NA coding upstream 1096932 21668341 ~ 21668882 (+)
LOC117598774 NA coding upstream 1100070 21664594 ~ 21665744 (+)
pdlim7 pdlim7 coding downstream 11730 22781366 ~ 22825233 (+)
LOC113546949 LOC108277208 coding downstream 372078 23141714 ~ 23143760 (+)
LOC113546924 NA coding downstream 377561 23147197 ~ 23156708 (+)
LOC113546950 NA coding downstream 390827 23160463 ~ 23163243 (+)
LOC113546948 LOC108277208 coding downstream 398708 23168344 ~ 23170849 (+)
G215336 NA non-coding upstream 29828 22735771 ~ 22735986 (+)
G215294 NA non-coding upstream 39168 22724687 ~ 22726646 (+)
LOC117598850 NA non-coding upstream 230038 22495208 ~ 22535776 (+)
LOC117595678 NA non-coding upstream 264444 22500883 ~ 22501370 (+)
G215153 NA non-coding upstream 360290 22401950 ~ 22405524 (+)
G215343 NA non-coding downstream 8980 22778616 ~ 22779241 (+)
G215295 NA non-coding downstream 57385 22827021 ~ 22830832 (+)
G215350 NA non-coding downstream 71708 22841344 ~ 22909078 (+)
G215360 unc5a,LOC107750348 non-coding downstream 84609 22854245 ~ 22857421 (+)
G215425 unc5a,LOC107677380,LOC107595741 non-coding downstream 159852 22929488 ~ 22929797 (+)
LOC113546930 LOC108275153 other upstream 274903 22463100 ~ 22490911 (+)
LOC113546936 NA other upstream 295136 22470179 ~ 22470678 (+)
LOC117598940 NA other upstream 368244 22397112 ~ 22397570 (+)
LOC117598922 LOC108275153 other upstream 374992 22390359 ~ 22390822 (+)
LOC117598883 NA other upstream 377665 22387697 ~ 22388149 (+)
trnat-cgu_7 NA other downstream 10650 22780286 ~ 22780576 (+)
G215347 NA other downstream 66028 22835664 ~ 22835902 (+)
G215621 LOC108277208 other downstream 367610 23137246 ~ 23170553 (+)
LOC113546919 LOC108278588 other downstream 961818 23731454 ~ 23741390 (+)
igfbp7 igfbp7 other downstream 972846 23742482 ~ 23748131 (+)

Expression


Co-expression Network