Gene
RNA
| Item | Value |
|---|---|
| gene id | G215343 |
| gene name | NA |
| gene type | non-coding |
| species | striped catfish (Pangasianodon hypophthalmus) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_047607.1 |
| NCBI id | CM018553.1 |
| chromosome length | 26458119 |
| location | 22778616 ~ 22779241 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU255136 | True | 606 | lncRNA | 0.48 | 2 | 22778616 | 22779241 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| rnf44 | rnf44 | coding | upstream | 24184 | 22733735 ~ 22754432 (+) |
| cckb | LOC108274239 | coding | upstream | 156636 | 22614859 ~ 22621980 (+) |
| LOC113546929 | NA | coding | upstream | 229750 | 22537502 ~ 22548866 (+) |
| LOC117598775 | NA | coding | upstream | 1109734 | 21668341 ~ 21668882 (+) |
| LOC117598774 | NA | coding | upstream | 1112872 | 21664594 ~ 21665744 (+) |
| pdlim7 | pdlim7 | coding | downstream | 2125 | 22781366 ~ 22825233 (+) |
| LOC113546949 | LOC108277208 | coding | downstream | 362473 | 23141714 ~ 23143760 (+) |
| LOC113546924 | NA | coding | downstream | 367956 | 23147197 ~ 23156708 (+) |
| LOC113546950 | NA | coding | downstream | 381222 | 23160463 ~ 23163243 (+) |
| LOC113546948 | LOC108277208 | coding | downstream | 389103 | 23168344 ~ 23170849 (+) |
| G215336 | NA | non-coding | upstream | 42630 | 22735771 ~ 22735986 (+) |
| G215294 | NA | non-coding | upstream | 51970 | 22724687 ~ 22726646 (+) |
| LOC117598850 | NA | non-coding | upstream | 242840 | 22495208 ~ 22535776 (+) |
| LOC117595678 | NA | non-coding | upstream | 277246 | 22500883 ~ 22501370 (+) |
| G215153 | NA | non-coding | upstream | 373092 | 22401950 ~ 22405524 (+) |
| G215295 | NA | non-coding | downstream | 47780 | 22827021 ~ 22830832 (+) |
| G215350 | NA | non-coding | downstream | 62103 | 22841344 ~ 22909078 (+) |
| G215360 | unc5a,LOC107750348 | non-coding | downstream | 75004 | 22854245 ~ 22857421 (+) |
| G215425 | unc5a,LOC107677380,LOC107595741 | non-coding | downstream | 150247 | 22929488 ~ 22929797 (+) |
| G215476 | NA | non-coding | downstream | 247202 | 23026443 ~ 23027619 (+) |
| higd2a | higd2a | other | upstream | 8980 | 22765814 ~ 22769636 (+) |
| LOC113546930 | LOC108275153 | other | upstream | 287705 | 22463100 ~ 22490911 (+) |
| LOC113546936 | NA | other | upstream | 307938 | 22470179 ~ 22470678 (+) |
| LOC117598940 | NA | other | upstream | 381046 | 22397112 ~ 22397570 (+) |
| LOC117598922 | LOC108275153 | other | upstream | 387794 | 22390359 ~ 22390822 (+) |
| trnat-cgu_7 | NA | other | downstream | 1045 | 22780286 ~ 22780576 (+) |
| G215347 | NA | other | downstream | 56423 | 22835664 ~ 22835902 (+) |
| G215621 | LOC108277208 | other | downstream | 358005 | 23137246 ~ 23170553 (+) |
| LOC113546919 | LOC108278588 | other | downstream | 952213 | 23731454 ~ 23741390 (+) |
| igfbp7 | igfbp7 | other | downstream | 963241 | 23742482 ~ 23748131 (+) |
