G215476


Basic Information

Item Value
gene id G215476
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 23026443 ~ 23027619 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU255271
aaaaaaattacaacagttaatggtagctagctagctagtgctACCTGACTAGCTCACTACCATAATtcccagagacacacagagacacacagagagctgTAACTAGCTTATAAACTCTCAACAGGTCTGTGAAAATCCATCCCTGTTGAACAAAACCTTATCTTTGAGCTAGCGACATACTGCTAACTGACCAGCTCACTACTGAGACACAAATGACTAGCTTAACAACACTCTTCAGTTCTGAGAGAAGCAATATCCCTTCACCAAGGCTTTGTGtttgagctagctagctggtgCTAAATGACTATCTCACTACTGAGACACAAGGTGACCCATGACTAGCTTATAAACTCTCCGCATGTCTGAGAGAAGCCTTTCTTGTAGAATTAAGCCTTAtctttaagctagctagcaggtGCTAGAAGACTAGCTTACTAACATCATCCTCAGAAACACGAGAGGCCCATGACTAGCTTAAAAACACTGCAGTTCTGACAGAAGCACTATCCCTTCACCAAGGCTTTGTAtttgagctagctagctggtgCTAACTGACTAGCTCACTATCATCACTCTCAGAGATGCATAGCAACCTGAGGCTAGCTTATAAACTCTCTGTGGTCCTGAAAAAAGCCTTTTTCCTTCAAAAATGCCTTGTGTTTGAGCTAAATAAACAGTTTTAGCCAGCTACATttgaaagaatataaaataaggcTCATAACgtatgaaataaaagaaaagtctGTTTTCTGTGCaataaaatgagtttaaatTAGCCGAGTATTTCCGATCATCGTGATTACAATAGCGAGCTAAATATTTGCTAGTAGGAACACatattatgtttataataatgagaaaaaCAGTCTATTTAATTATAACCTCTAGTGATGGTTTAACACTAATGATAGTAAAGGATTTCTGTTAATAATAGTTTTTAGCACATTTAGACTTTTTCCTGTTATAATGggtaataatacagtaatgaTAGACTTGCTAAAATGGCAAATAGGAATCTGGTGCAAAACACTTATTCTTCTCTTGCTCTTAACATCATCAATGCCCTTTTTCAGCGATTTTCTTTCAATTTGGACTGTCAGAAAAAAGCCATAATTTCACACATGAggatttttgtaaaaatatatatacatagtgaCAAAGGTAAGTGAAGGGAAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU255271 True 1177 lncRNA 0.37 1 23026443 23027619

Neighbor

gene id symbol gene type direction distance location
pdlim7 pdlim7 coding upstream 201210 22781366 ~ 22825233 (+)
rnf44 rnf44 coding upstream 272011 22733735 ~ 22754432 (+)
cckb LOC108274239 coding upstream 404463 22614859 ~ 22621980 (+)
LOC113546929 NA coding upstream 477577 22537502 ~ 22548866 (+)
LOC117598775 NA coding upstream 1357561 21668341 ~ 21668882 (+)
LOC113546949 LOC108277208 coding downstream 114095 23141714 ~ 23143760 (+)
LOC113546924 NA coding downstream 119578 23147197 ~ 23156708 (+)
LOC113546950 NA coding downstream 132844 23160463 ~ 23163243 (+)
LOC113546948 LOC108277208 coding downstream 140725 23168344 ~ 23170849 (+)
atoh1b LOC108277232 coding downstream 255629 23283248 ~ 23285620 (+)
G215425 unc5a,LOC107677380,LOC107595741 non-coding upstream 96646 22929488 ~ 22929797 (+)
G215350 NA non-coding upstream 117365 22841344 ~ 22909078 (+)
G215360 unc5a,LOC107750348 non-coding upstream 169022 22854245 ~ 22857421 (+)
G215295 NA non-coding upstream 195611 22827021 ~ 22830832 (+)
G215343 NA non-coding upstream 247202 22778616 ~ 22779241 (+)
G215479 NA non-coding downstream 7836 23035455 ~ 23035659 (+)
LOC113546955 NA non-coding downstream 203899 23231518 ~ 23298835 (+)
G215638 fam193b non-coding downstream 287550 23315169 ~ 23315568 (+)
G215637 fam193b non-coding downstream 289207 23316826 ~ 23317147 (+)
G215656 NA non-coding downstream 291126 23318745 ~ 23319138 (+)
G215347 NA other upstream 190541 22835664 ~ 22835902 (+)
trnat-cgu_7 NA other upstream 245867 22780286 ~ 22780576 (+)
higd2a higd2a other upstream 256807 22765814 ~ 22769636 (+)
LOC113546930 LOC108275153 other upstream 535532 22463100 ~ 22490911 (+)
G215621 LOC108277208 other downstream 109627 23137246 ~ 23170553 (+)
LOC113546919 LOC108278588 other downstream 703835 23731454 ~ 23741390 (+)
igfbp7 igfbp7 other downstream 714863 23742482 ~ 23748131 (+)
fbxl16 fbxl16,LOC107738613,LOC107685932,LOC107568127,LOC107733860,LOC107568165,LOC107690242 other downstream 866628 23894247 ~ 23920403 (+)
rbfox1 rbfox1,LOC107733849 other downstream 1011289 24038908 ~ 24330000 (+)

Expression


Co-expression Network