Gene
RNA
| Item | Value |
|---|---|
| gene id | G215479 |
| gene name | NA |
| gene type | non-coding |
| species | striped catfish (Pangasianodon hypophthalmus) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_047607.1 |
| NCBI id | CM018553.1 |
| chromosome length | 26458119 |
| location | 23035455 ~ 23035659 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU255274 | True | 205 | lncRNA | 0.52 | 1 | 23035455 | 23035659 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| pdlim7 | pdlim7 | coding | upstream | 210222 | 22781366 ~ 22825233 (+) |
| rnf44 | rnf44 | coding | upstream | 281023 | 22733735 ~ 22754432 (+) |
| cckb | LOC108274239 | coding | upstream | 413475 | 22614859 ~ 22621980 (+) |
| LOC113546929 | NA | coding | upstream | 486589 | 22537502 ~ 22548866 (+) |
| LOC117598775 | NA | coding | upstream | 1366573 | 21668341 ~ 21668882 (+) |
| LOC113546949 | LOC108277208 | coding | downstream | 106055 | 23141714 ~ 23143760 (+) |
| LOC113546924 | NA | coding | downstream | 111538 | 23147197 ~ 23156708 (+) |
| LOC113546950 | NA | coding | downstream | 124804 | 23160463 ~ 23163243 (+) |
| LOC113546948 | LOC108277208 | coding | downstream | 132685 | 23168344 ~ 23170849 (+) |
| atoh1b | LOC108277232 | coding | downstream | 247589 | 23283248 ~ 23285620 (+) |
| G215476 | NA | non-coding | upstream | 7836 | 23026443 ~ 23027619 (+) |
| G215425 | unc5a,LOC107677380,LOC107595741 | non-coding | upstream | 105658 | 22929488 ~ 22929797 (+) |
| G215350 | NA | non-coding | upstream | 126377 | 22841344 ~ 22909078 (+) |
| G215360 | unc5a,LOC107750348 | non-coding | upstream | 178034 | 22854245 ~ 22857421 (+) |
| G215295 | NA | non-coding | upstream | 204623 | 22827021 ~ 22830832 (+) |
| LOC113546955 | NA | non-coding | downstream | 195859 | 23231518 ~ 23298835 (+) |
| G215638 | fam193b | non-coding | downstream | 279510 | 23315169 ~ 23315568 (+) |
| G215637 | fam193b | non-coding | downstream | 281167 | 23316826 ~ 23317147 (+) |
| G215656 | NA | non-coding | downstream | 283086 | 23318745 ~ 23319138 (+) |
| G215664 | NA | non-coding | downstream | 320532 | 23356191 ~ 23359559 (+) |
| G215347 | NA | other | upstream | 199553 | 22835664 ~ 22835902 (+) |
| trnat-cgu_7 | NA | other | upstream | 254879 | 22780286 ~ 22780576 (+) |
| higd2a | higd2a | other | upstream | 265819 | 22765814 ~ 22769636 (+) |
| LOC113546930 | LOC108275153 | other | upstream | 544544 | 22463100 ~ 22490911 (+) |
| G215621 | LOC108277208 | other | downstream | 101587 | 23137246 ~ 23170553 (+) |
| LOC113546919 | LOC108278588 | other | downstream | 695795 | 23731454 ~ 23741390 (+) |
| igfbp7 | igfbp7 | other | downstream | 706823 | 23742482 ~ 23748131 (+) |
| fbxl16 | fbxl16,LOC107738613,LOC107685932,LOC107568127,LOC107733860,LOC107568165,LOC107690242 | other | downstream | 858588 | 23894247 ~ 23920403 (+) |
| rbfox1 | rbfox1,LOC107733849 | other | downstream | 1003249 | 24038908 ~ 24330000 (+) |
