G215621 (LOC108277208)


Basic Information

Item Value
gene id G215621
gene name LOC108277208
gene type unknown
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 23137246 ~ 23170553 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU255420
AACCCTCCAACGGGCTCGTGCAGCTGAGCTCGCCCAGTTCCTGCCTCCGAGAACATGCAGCTTCGGTCTTAACCATAAACTTCACAAGACGTCTTTTAAAGAAGACTTTTCTTGTTAAGAGCAAGATCATGTCATTCCTGGCAGATGTTGTTGAAGTTGGTGGGAATGGAGGAAGTCCTTTTGATTTTGATGGCACTGAACATGGAACCATGTTGAAAAAGATCACGGTGTGGGTCGGTAACTGGCAGGTGAAAGCCATGAAGGTTTGGCTTACTGATGGCCTGTCCAAGCAGTTTGGTGAACCTGGTGGGAATTTTACAGAGTTTATATTTGAAGATGGGGAGCATTTCACCTCCCTTTCACTTTGGGCAAATGGAAATGGAACACGTCTGGGTGCCATCAAATTCAAGACAAATCACTCCCGGGAGTTCTTTGCACGCTTGACAGGATGGGTGCTGCAACCAGAAGTTCCAGTTGATGTTGCTTCTGGGATCTGCATGGGAATCAAAGGACGCTCAGGTTTAGATATTGATTGCTTAGGCTTCATGTTCATTAACACCATCAAGTCTACTGAGCTTACAAATGTTGAGTATCCCACACTTCATGATGTGATACCCAAAGTGGCTGTTGCGGAAATCAAATCCATGACCTACCAGAATAACACTACTGAAACGCAAGAATATACAATTGAAACCTCCAAAAAAATCACCCAAACATCCTCCTGGTCT
>TU255422
GGGAATTTTACAGAGTTTATATTTGAAGATGGGGAGCATTTCACCTCCCTTTCACTTTGGGCAAATGGAAATGGAACACGTCTGGGTGCCATCAAATTCAAGACAAATCACTCCCGGGAGTTCTTTGCACGCTTGACAGGATGGGTGCTGCAACCAGAAGTTCCAGTTGATGTTGCTTCTGGGATCTGCATGGGAATCAAAGGACGCTCAGGTTTAGATATTGATTGCTTAGGCTTCATGTTCATTAACACCATCAAGTCTACTGAGCTTACAAATGTTGAGTATCCCACACTTCATGATGTGATACCCAAAGTGGCTGTTGCGGAAATCAAATCCATGACCTACCAGAATAACACTACTGAAACGCAAGAATATAGAATTGAAACCTCCAAAAAAATCACCCAAAAATCCTCCTGGTCTGTTACCGACAGACTGGAATTCATGTTCAGCCTCGAAGTGAAGGCAGGAATTCCACTAATTGCAGAAGGCACAACAAGTTACGAATTCAGAATTGGAGTTGAGAGTACATATGCTTCGGAGACCACTGAAGAGAAGATGGAGCTCTTCtcgtttcctgttaaagtccctCCAGGTACAACCGTGGATGTGGACATCACAACTGGCCAGGCTACAATTGATCTTCCCTTCAATGGCATAGTCAAGATTACCTGCTATAATGGCAGTGTGCTGCAGTTTAATACCAGTGGGACCTACAAGGGTGTCACTTACACTGATGGAAAAGTAGTTGTGAATGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU255420 False 728 TUCP 0.45 3 23141752 23170218
TU255422 True 755 TUCP 0.44 3 23137246 23170553

Neighbor

gene id symbol gene type direction distance location
pdlim7 pdlim7 coding upstream 312013 22781366 ~ 22825233 (+)
rnf44 rnf44 coding upstream 382814 22733735 ~ 22754432 (+)
cckb LOC108274239 coding upstream 515266 22614859 ~ 22621980 (+)
LOC113546929 NA coding upstream 588380 22537502 ~ 22548866 (+)
LOC117598775 NA coding upstream 1468364 21668341 ~ 21668882 (+)
atoh1b LOC108277232 coding downstream 112695 23283248 ~ 23285620 (+)
LOC113546963 slc39a8 coding downstream 172408 23342961 ~ 23355343 (+)
LOC113546983 LOC108277145,LOC108432419,LOC103366337,LOC107082714,LOC107697613,LOC105918713 coding downstream 287250 23457803 ~ 23554508 (+)
cpxm1b LOC108274665,LOC105911438,LOC102297474,LOC102196974,LOC102797758 coding downstream 541966 23712519 ~ 23730112 (+)
noa1 noa1 coding downstream 597021 23767574 ~ 23772974 (+)
G215479 NA non-coding upstream 101587 23035455 ~ 23035659 (+)
G215476 NA non-coding upstream 109627 23026443 ~ 23027619 (+)
G215425 unc5a,LOC107677380,LOC107595741 non-coding upstream 207449 22929488 ~ 22929797 (+)
G215350 NA non-coding upstream 228168 22841344 ~ 22909078 (+)
G215360 unc5a,LOC107750348 non-coding upstream 279825 22854245 ~ 22857421 (+)
LOC113546955 NA non-coding downstream 60965 23231518 ~ 23298835 (+)
G215638 fam193b non-coding downstream 144616 23315169 ~ 23315568 (+)
G215637 fam193b non-coding downstream 146273 23316826 ~ 23317147 (+)
G215656 NA non-coding downstream 148192 23318745 ~ 23319138 (+)
G215664 NA non-coding downstream 185638 23356191 ~ 23359559 (+)
G215347 NA other upstream 301344 22835664 ~ 22835902 (+)
trnat-cgu_7 NA other upstream 356670 22780286 ~ 22780576 (+)
higd2a higd2a other upstream 367610 22765814 ~ 22769636 (+)
LOC113546930 LOC108275153 other upstream 646335 22463100 ~ 22490911 (+)
LOC113546936 NA other upstream 666568 22470179 ~ 22470678 (+)
LOC113546919 LOC108278588 other downstream 560901 23731454 ~ 23741390 (+)
igfbp7 igfbp7 other downstream 571929 23742482 ~ 23748131 (+)
fbxl16 fbxl16,LOC107738613,LOC107685932,LOC107568127,LOC107733860,LOC107568165,LOC107690242 other downstream 723694 23894247 ~ 23920403 (+)
rbfox1 rbfox1,LOC107733849 other downstream 868355 24038908 ~ 24330000 (+)
G216197 NA other downstream 1286517 24457070 ~ 24458004 (+)

Expression


Co-expression Network