G215664


Basic Information

Item Value
gene id G215664
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 23356191 ~ 23359559 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU255485
cTTGTGTTACACATCTGatgtatctatctatacatttagaattatttaacattcatttgaCACAGAATATTGTACAACAATATGATCAGTGCAATATTCCTGGTAGTTAAAATTAACATTTCTcttcaaaaaaatatacatctactgtatactatagatCTTAGAACATTAACCTTAGATTTTATATCAGTACAAAAAATGTTTGATCACATGAGATGTTATGAGAGCAGGTACATAACTGAACGAGTGTAGTCATGTGGAGGCACATAAGCTCTAAAAACGATCTAAAACGGCACGATTCTTCAACAACATCCAACATCCTGAGGCAGCAGAACAGCTTGAACAGAGAGAATAACACAGCTCTTCCactcttttaaaatatttggcCTTTTTAAACTGATCTTAGACCAGGTTTACAGTTTCTTTTGAAATGATGAAGATTAACATGTACTGTATAGGATTTTGAGCATTTCTAAGCGCATCAGCGTAAGACCTATACTaccttttattaaatataaacctgtttgttttttgtttttttttaaattataaaccACATTTAACAGTCCTTGGAAATTTTTTATACAGAGCATTTCTGGTATCAGACTTTATAGCTTCAACTTATATGacctttaaaattttttatagCTGTACAGAATGATAGAATGCGCAATTTAAAGCTGCAATACGTAAGTGCTTGGAACACAGCAATGCCCAACTTTAtagctttaattttatattagcTTCAAAGCTGTTTAGACCTGACAATACATATTTCTGAAAAGGTCATACAGTTCATGGCTATAACGTTGATCCACATAAACATTTTCACACCACCTTTGatatacattaattttttttttttacatcagaaaTGTTCAAAATCTTAGGTAATATACCAACATCAGTGTAAAAAGGTCAAAGAACTGGACACACAGTACAGCAATACTGCAGAGTTTCGAAAAGCACTTAGATGAGGCACTACAGTGggaattaaatatatacacatacattatgATTCAATAATTAACAAGAGTTAAATATGACCATTCAGAACATTTCTACAAGGAACACTATGATTTCTAGGATTAAGTAAGAGCACTCTGGACAAAGAGGAAGAGCAGCACATACACAACGCCACAAAGCGTCTATCAGCGGACAATCAACCACCACAATACAGTACAGGACTGGGCGCTTTTGTCTTCAAATACTGACACCATGTAATGCTGATTGTAGGCAGGGATACAACGATCTGATATTGAGAATCGACCCGACTTTGGCGTGAAATGGTAGATCGGTATCGGAACAGATTTGATATTTTCCAACACTGATGTATTTATCGGcgtttcttgatttttttttttttttaactgatacATGCAACGTTATGAATTTTGGAGATTAGATACCATTTTCAAGTACAGAGAAAATGACAGGGAATGCAAAACGCAAATCTCAAGATTGTCACACTAATCAAGAAAGACAGAAGTGTACAAAATACACAAGGTGGGTTATTATACCTGTTTAAGAGGTCAACAACAAGAGATGATGACATCACATCCTCTAATACTGTGACCAGATTATGgtaaaatacagagaaatatatatttaaggaATATTCATGATTGTTAATTAAGACTGAACCAATAGTGTATAATAGTCATTTTTGAGTGTGAATTTTCACTGGACCAGTTTAGACCACATTCAGGCTCTGAGAATTAGCTAATCCCAGAATATAAGCAAATACGGTCTGTGTTTAAAATAGTGCAATATGGTTTTGCTTTTTCCTTCATACATATCATGATTTATTTGAAGAACTATTATTTTGTTATACATGCcgtaaaatgtgtgtaatgatgaCTGATAAGTTTCCTTTTCATGACAAGAAGTTAGCAATTAGGATTTTCCCATTATCCTCACCCAACACTATCTTTTAAACGCCTATGATATTCAAGTAAGGTCGATATTATTTAAGCACCGGCTGATACTCAGACCTCTGATACTGGAATTGTatggggggggaaaaaaggaatgTAGGAATGTATGTTCCCCCAAAAAAGGTAAGAAGGATGGTTCTGTAAATACTTCTGTGCAAAGCTTCAACCTATCATCACTCAGTATTGATCAGTCCTTTGGCATTCAGAAAATTCCCAGTCccactaaaaacaaaaaaaaaaatatggcacagcATCTCAGATACTAATGCAAGGCCAGAGTGGCAGAACCAAGAGCAGAAAGCGCAGAGGTAGATGCAGAGCAAGCACTGCTTTAGAGAAGCGGTAGTAGTGGTAGTCTGCTTGTTCttctatatatgtatgtatgtatgtatgtatgtacactgCTACAACAGTTTAATGGAATATTGGATAGTGAACAGGACTAACTAGTCACTGTACATCAAGTACATGTATACAGTACAACATTCTGTAAGTATTAAtgaatatattcaatatataaaacatacagtatatacactgaaTATAtccagtatattattatataataaagcACTGTGCTTACACCGAGATATTTACTGTACAACTTTACAGTAGGGCACGTTTACAATCTTGCAAACATTTGTCTAGAATATTAGAACCTGTAGAAGTTACTCTAGTACAAGAGTTcgtctatacacacactcaaaaactATTCATGCTCCTAAGACAACGTGACGAGTTCTGATTTAAAGGCTTCACTTGACTTGACACGACCACATGACTATaagcagccaatcagcagcCTCTGCGTACATTTGAGCACTCGTACGCTGATCTAGATAGAATCAGCTGgtgttataaaatgttataaaagaaaataaacatctgactTCAGGTCAGTGTGAAACAGCTTCAGCCAACGAGATGGAAGGTAGACAGAAATTCAAACAGCTGTAGAAATGCTGATTGAAACCTAAACCGCATTTACAGCTCCGAGAATGCCTCAAAACAGGCAAGTGGTAACCACAAGTTAGCCTAATTATAGCAAATATACTGAAAAAATCTGTAACATGCTCAGATTTTTCCACAGGAGAAAAGGAATACAGCACGAATACATCATTTATTGGAATGTTAAGTGTATGGTGATCAGTCAGTAGATACGACACTTGCTGAGTGTCTAACAGGAGTGTAAGATGATTGTCTGACTGCTGAGATGTTTCTATGATTGACACTTGTGTGCAAACAGCAGGCGCAgtgtgagagtatgtgtgtgtatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgcatggtgaAGAAAGCTACAACGGCTTGCTACGGCACATAAAATTCATGGCATtgacattaatgcaaaaaaatggtGCTTACTGGCAGTCATTTTGCTTGGCACAAGTGCTCCAATATAGTT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU255485 True 3369 lncRNA 0.36 1 23356191 23359559

Neighbor

gene id symbol gene type direction distance location
LOC113546963 slc39a8 coding upstream 848 23342961 ~ 23355343 (+)
atoh1b LOC108277232 coding upstream 70571 23283248 ~ 23285620 (+)
LOC113546948 LOC108277208 coding upstream 185342 23168344 ~ 23170849 (+)
LOC113546950 NA coding upstream 192948 23160463 ~ 23163243 (+)
LOC113546924 NA coding upstream 199483 23147197 ~ 23156708 (+)
LOC113546983 LOC108277145,LOC108432419,LOC103366337,LOC107082714,LOC107697613,LOC105918713 coding downstream 98244 23457803 ~ 23554508 (+)
cpxm1b LOC108274665,LOC105911438,LOC102297474,LOC102196974,LOC102797758 coding downstream 352960 23712519 ~ 23730112 (+)
noa1 noa1 coding downstream 408015 23767574 ~ 23772974 (+)
eef2kmt eef2kmt coding downstream 414821 23774380 ~ 23778006 (+)
c13h16orf89 c2h16orf89 coding downstream 425077 23784636 ~ 23790699 (+)
G215656 NA non-coding upstream 37053 23318745 ~ 23319138 (+)
G215637 fam193b non-coding upstream 39044 23316826 ~ 23317147 (+)
G215638 fam193b non-coding upstream 40623 23315169 ~ 23315568 (+)
LOC113546955 NA non-coding upstream 57356 23231518 ~ 23298835 (+)
G215479 NA non-coding upstream 320532 23035455 ~ 23035659 (+)
G215666 NA non-coding downstream 4799 23364358 ~ 23364580 (+)
G215667 NA non-coding downstream 6722 23366281 ~ 23366795 (+)
G215685 NA non-coding downstream 28859 23388418 ~ 23389353 (+)
LOC117599008 NA non-coding downstream 232309 23591868 ~ 23593648 (+)
G215824 NA non-coding downstream 262813 23622372 ~ 23622609 (+)
G215621 LOC108277208 other upstream 185638 23137246 ~ 23170553 (+)
G215347 NA other upstream 520289 22835664 ~ 22835902 (+)
trnat-cgu_7 NA other upstream 575615 22780286 ~ 22780576 (+)
higd2a higd2a other upstream 586555 22765814 ~ 22769636 (+)
LOC113546936 NA other upstream 885513 22470179 ~ 22470678 (+)
LOC113546919 LOC108278588 other downstream 371895 23731454 ~ 23741390 (+)
igfbp7 igfbp7 other downstream 382923 23742482 ~ 23748131 (+)
fbxl16 fbxl16,LOC107738613,LOC107685932,LOC107568127,LOC107733860,LOC107568165,LOC107690242 other downstream 534688 23894247 ~ 23920403 (+)
rbfox1 rbfox1,LOC107733849 other downstream 679349 24038908 ~ 24330000 (+)
G216197 NA other downstream 1097511 24457070 ~ 24458004 (+)

Expression


Co-expression Network