Gene
RNA
| Item | Value |
|---|---|
| gene id | G215667 |
| gene name | NA |
| gene type | non-coding |
| species | striped catfish (Pangasianodon hypophthalmus) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_047607.1 |
| NCBI id | CM018553.1 |
| chromosome length | 26458119 |
| location | 23366281 ~ 23366795 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU255489 | True | 515 | lncRNA | 0.43 | 1 | 23366281 | 23366795 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC113546963 | slc39a8 | coding | upstream | 10938 | 23342961 ~ 23355343 (+) |
| atoh1b | LOC108277232 | coding | upstream | 80661 | 23283248 ~ 23285620 (+) |
| LOC113546948 | LOC108277208 | coding | upstream | 195432 | 23168344 ~ 23170849 (+) |
| LOC113546950 | NA | coding | upstream | 203038 | 23160463 ~ 23163243 (+) |
| LOC113546924 | NA | coding | upstream | 209573 | 23147197 ~ 23156708 (+) |
| LOC113546983 | LOC108277145,LOC108432419,LOC103366337,LOC107082714,LOC107697613,LOC105918713 | coding | downstream | 91008 | 23457803 ~ 23554508 (+) |
| cpxm1b | LOC108274665,LOC105911438,LOC102297474,LOC102196974,LOC102797758 | coding | downstream | 345724 | 23712519 ~ 23730112 (+) |
| noa1 | noa1 | coding | downstream | 400779 | 23767574 ~ 23772974 (+) |
| eef2kmt | eef2kmt | coding | downstream | 407585 | 23774380 ~ 23778006 (+) |
| c13h16orf89 | c2h16orf89 | coding | downstream | 417841 | 23784636 ~ 23790699 (+) |
| G215666 | NA | non-coding | upstream | 1701 | 23364358 ~ 23364580 (+) |
| G215664 | NA | non-coding | upstream | 6722 | 23356191 ~ 23359559 (+) |
| G215656 | NA | non-coding | upstream | 47143 | 23318745 ~ 23319138 (+) |
| G215637 | fam193b | non-coding | upstream | 49134 | 23316826 ~ 23317147 (+) |
| G215638 | fam193b | non-coding | upstream | 50713 | 23315169 ~ 23315568 (+) |
| G215685 | NA | non-coding | downstream | 21623 | 23388418 ~ 23389353 (+) |
| LOC117599008 | NA | non-coding | downstream | 225073 | 23591868 ~ 23593648 (+) |
| G215824 | NA | non-coding | downstream | 255577 | 23622372 ~ 23622609 (+) |
| LOC117598845 | NA | non-coding | downstream | 381412 | 23748207 ~ 23751597 (+) |
| LOC117598769 | NA | non-coding | downstream | 974893 | 24341688 ~ 24363384 (+) |
| G215621 | LOC108277208 | other | upstream | 195728 | 23137246 ~ 23170553 (+) |
| G215347 | NA | other | upstream | 530379 | 22835664 ~ 22835902 (+) |
| trnat-cgu_7 | NA | other | upstream | 585705 | 22780286 ~ 22780576 (+) |
| higd2a | higd2a | other | upstream | 596645 | 22765814 ~ 22769636 (+) |
| LOC113546936 | NA | other | upstream | 895603 | 22470179 ~ 22470678 (+) |
| LOC113546919 | LOC108278588 | other | downstream | 364659 | 23731454 ~ 23741390 (+) |
| igfbp7 | igfbp7 | other | downstream | 375687 | 23742482 ~ 23748131 (+) |
| fbxl16 | fbxl16,LOC107738613,LOC107685932,LOC107568127,LOC107733860,LOC107568165,LOC107690242 | other | downstream | 527452 | 23894247 ~ 23920403 (+) |
| rbfox1 | rbfox1,LOC107733849 | other | downstream | 672113 | 24038908 ~ 24330000 (+) |
| G216197 | NA | other | downstream | 1090275 | 24457070 ~ 24458004 (+) |
