G215824


Basic Information

Item Value
gene id G215824
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 23622372 ~ 23622609 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU255659
ggcagttgtggcctaatggatagagagtcggacttgcagcccaaaggtgaacctgaaggttgtgggttcgagtctcaggtctggcagggattgtaggtggggggagtgaatgaccagcgctctctcccactctcaataccacgactgaggtgagacccttgagcaaggcaccgaacccccaactgctccccgggcgctgcagcaaaaaaggctgcccactgctccgggtgtgtgtgtg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU255659 True 238 lncRNA 0.59 1 23622372 23622609

Neighbor

gene id symbol gene type direction distance location
LOC113546983 LOC108277145,LOC108432419,LOC103366337,LOC107082714,LOC107697613,LOC105918713 coding upstream 67864 23457803 ~ 23554508 (+)
LOC113546963 slc39a8 coding upstream 267029 23342961 ~ 23355343 (+)
atoh1b LOC108277232 coding upstream 336752 23283248 ~ 23285620 (+)
LOC113546948 LOC108277208 coding upstream 451523 23168344 ~ 23170849 (+)
LOC113546950 NA coding upstream 459129 23160463 ~ 23163243 (+)
cpxm1b LOC108274665,LOC105911438,LOC102297474,LOC102196974,LOC102797758 coding downstream 89910 23712519 ~ 23730112 (+)
noa1 noa1 coding downstream 144965 23767574 ~ 23772974 (+)
eef2kmt eef2kmt coding downstream 151771 23774380 ~ 23778006 (+)
c13h16orf89 c2h16orf89 coding downstream 162027 23784636 ~ 23790699 (+)
si:ch211-76l23.4 si:ch211-76l23.4,LOC108256336,LOC101172412 coding downstream 187690 23810299 ~ 23813635 (+)
LOC117599008 NA non-coding upstream 28724 23591868 ~ 23593648 (+)
G215685 NA non-coding upstream 233019 23388418 ~ 23389353 (+)
G215667 NA non-coding upstream 255577 23366281 ~ 23366795 (+)
G215666 NA non-coding upstream 257792 23364358 ~ 23364580 (+)
G215664 NA non-coding upstream 262813 23356191 ~ 23359559 (+)
LOC117598845 NA non-coding downstream 125598 23748207 ~ 23751597 (+)
LOC117598769 NA non-coding downstream 719079 24341688 ~ 24363384 (+)
G216174 NA non-coding downstream 801157 24423766 ~ 24444172 (+)
G216171 NA non-coding downstream 822464 24445073 ~ 24447468 (+)
G216185 NA non-coding downstream 836776 24459385 ~ 24462851 (+)
G215621 LOC108277208 other upstream 451819 23137246 ~ 23170553 (+)
G215347 NA other upstream 786470 22835664 ~ 22835902 (+)
trnat-cgu_7 NA other upstream 841796 22780286 ~ 22780576 (+)
higd2a higd2a other upstream 852736 22765814 ~ 22769636 (+)
LOC113546936 NA other upstream 1151694 22470179 ~ 22470678 (+)
LOC113546919 LOC108278588 other downstream 108845 23731454 ~ 23741390 (+)
igfbp7 igfbp7 other downstream 119873 23742482 ~ 23748131 (+)
fbxl16 fbxl16,LOC107738613,LOC107685932,LOC107568127,LOC107733860,LOC107568165,LOC107690242 other downstream 271638 23894247 ~ 23920403 (+)
rbfox1 rbfox1,LOC107733849 other downstream 416299 24038908 ~ 24330000 (+)
G216197 NA other downstream 834461 24457070 ~ 24458004 (+)

Expression


Co-expression Network