G216171


Basic Information

Item Value
gene id G216171
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 24445073 ~ 24447468 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU256065
CTTTTCATATCTTTTATTTCCTCGTGTTCTCTCTCACAAAACTCTTACGTCATCTTGAAATGTACGACTGCACTGATGGATGAgtggaacaaaaataaaacaaacagatacGCGGATTTAAAAAAGTGGTACATGTCAGTCTTGGTAGAAAAAGAAATGTAGCcaatacactgaagacatttcatTTGATCGAGAAAATTTTAACTGAtgcatcaaataaataataaaacgaATCACTTTACAATCGTGTCATTGCAAATCTTGGACAGTTGAGAGAGCTGTTGCACAGAGCTTCATGCACTTAAAAACTACAtcttaacataaaaaaaaaaaaaaaaaaaaaaaaggagcatgACAGAAATATCATTTATAGCAACAAGCTGGTTTTGGTGTCTACGGTTTCGaccaaaaatggtcaaaacgtctatgttaatatttaaacagtggaaaaaataaaaacagcaatatCAGCTCATTCTCCTTTCTATGAACATTCCATAATAACTCTAATCCTCATTCGAATCTAAAACGAATCCTTTTATCCTATAGGTTTTATATCCTCTCAGGTGTAATATTCAGCTTTACATCTCTGTTTAAAGGCCCggaaaatgtttttctgttgagATCGCTTTACATTTTGGATTGGTGTCGTGTAACAcgtgaaattattattattattaggataCAAACTTTATTACAGAGATGTGGTTCAATTTTTCCTTGGGGacaaaaacttttgcactcagctatatatagatgcatttttttgttttgttttggttttttttaacatttgggTCAAAGTCAGATTTCTCGTGTCTGCATCCAGGACCAAATTTTggcttttttattaaatgaatttttttggaCAAGCAGGACGTCATgatcatcatatttattttcacacttactgatttttttttggatgcatagaggtattttttttactatatgttttatttaattatttaattgattCAATTAGTGTTTTTTTACTCAAGACTTTCTGCTCGtttaagtgcaaaaaaaaaaaaattcagcatctTTTAAGGCGTTGTTTTCACTTGAATACCTTCTCTCTGTCCATATATGGAGATATCATCCTGTCTCCTCTACAGACCACAACATCGCTTTCCTGCCCTAGTGGAACCTGAAACAGGAAGTTCATATACCAATCATGTTATTTGACGCCTGAtcgctttcacacacacacacacggttcacttcagttcacttgtctgaggaggaaaaaagaaaaacagcttttaGGTTTCAAACAAAATGTTCAGAACGAGCTTGGGCCTTgaaaaagagttttaaaaaagagCCTTTAATTTAACACTGTTGTACgttttgtgaaaaatgtttattatgacTGTAAAACAGGAACGTGCCTCGCCTCTTTTCCTAAAGGACACGCCAAAAAGAAATCGCGCTCCATGAATCCTGACCCTGGTTCCAAATCCACTGAACTCTCTGCAGTCATAACAGGAAGCTACATGCAACGCACAATCAGTTCCTTACAATGTTTATTGGTTTTTGGAAATCCCTGATTTTCACCTGTTTACACCATCGACTATCTGTTACATTCATGTTTTAATGcgtataaaaacaaaacacactgtgtttatggGCGTGATCATTtcagattaaatttaaaaacaggtCAGAAGTGACTTCTTGATGATCTACAGCACCGACGCTGTGCATTAAAACCATCACTTAAAACGTCgcataaacaaacacaatttaaaaaaaaaaaacgtgcacTTGTACGACGAGCGTCCTTAGACCTTCTTATCCAGAGCAGGCACAcgtaaaaattattaaaaatacgAGCAAACTATAGAAAATTTTCTACACAGCAGCGTAATTACAGGCATGAAGTTCACGGAGGGGCCACGTTAAGAGGAGAGTGGGATAAAGACGATGCATATATTAATCATGAGTATATATTATGTACAGATATTATACATGGCCTGAACGTTGTAAAGGGCCGAGACGGGTTTTGTGTAAAAATCGGCAACGCTGAGGTTCAGGTGTCGAGCTGGTAAGACGGAAAGACTTCTGTCCTTCACCTGGAGGATggaaagaaaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU256065 True 2097 lncRNA 0.35 2 24445073 24447468

Neighbor

gene id symbol gene type direction distance location
abat abat,LOC107690246,LOC107738621,LOC106592407 coding upstream 26527 24385737 ~ 24418546 (+)
mettl22 mettl22 coding upstream 61179 24365746 ~ 24383894 (+)
gsg1l gsg1l,LOC108275613,LOC108436662,LOC103031039,LOC107738642,LOC107690243,LOC106938975 coding upstream 574274 23846609 ~ 23870799 (+)
si:ch211-76l23.4 si:ch211-76l23.4,LOC108256336,LOC101172412 coding upstream 631438 23810299 ~ 23813635 (+)
c13h16orf89 c2h16orf89 coding upstream 654374 23784636 ~ 23790699 (+)
c13h16orf72 c2h16orf72,cunh16orf72,LOC105900007,LOC103025273,LOC107590581,LOC107685917,LOC107738628,LOC103038624 coding downstream 121765 24569233 ~ 24575461 (+)
atf7ip2 atf7ip2 coding downstream 363612 24811080 ~ 24829473 (+)
nubp1 nubp1,LOC107690260,LOC107685912,LOC107590599 coding downstream 419932 24867400 ~ 24896195 (+)
ciita ciita coding downstream 451953 24899421 ~ 24920755 (+)
clec16a clec16a coding downstream 476032 24923500 ~ 24995766 (+)
G216174 NA non-coding upstream 901 24423766 ~ 24444172 (+)
LOC117598769 NA non-coding upstream 81689 24341688 ~ 24363384 (+)
LOC117598845 NA non-coding upstream 693476 23748207 ~ 23751597 (+)
G215824 NA non-coding upstream 822464 23622372 ~ 23622609 (+)
LOC117599008 NA non-coding upstream 851425 23591868 ~ 23593648 (+)
G216185 NA non-coding downstream 11917 24459385 ~ 24462851 (+)
G216167 NA non-coding downstream 22591 24470059 ~ 24473172 (+)
G216230 NA non-coding downstream 93258 24540726 ~ 24588450 (+)
G216249 NA non-coding downstream 117744 24565212 ~ 24594617 (+)
G216459 grin2a,LOC107733867,LOC107690256,LOC107568390,LOC107685916 non-coding downstream 238970 24686438 ~ 24686669 (+)
rbfox1 rbfox1,LOC107733849 other upstream 115073 24038908 ~ 24330000 (+)
fbxl16 fbxl16,LOC107738613,LOC107685932,LOC107568127,LOC107733860,LOC107568165,LOC107690242 other upstream 524670 23894247 ~ 23920403 (+)
igfbp7 igfbp7 other upstream 696942 23742482 ~ 23748131 (+)
LOC113546919 LOC108278588 other upstream 703683 23731454 ~ 23741390 (+)
G215621 LOC108277208 other upstream 1274520 23137246 ~ 23170553 (+)
G216197 NA other downstream 9602 24457070 ~ 24458004 (+)
si:ch211-157c3.4 LOC108278842 other downstream 82211 24529679 ~ 24539117 (+)
G216515 grin2a,LOC107568390,LOC107685916,LOC107690256,LOC108413991 other downstream 349786 24797254 ~ 24797678 (+)
LOC113523791 nacc1,LOC103025552,LOC107577049 other downstream 1809903 26257371 ~ 26301906 (+)
ier2a LOC108261286 other downstream 1857978 26305446 ~ 26306768 (+)

Expression


Co-expression Network