G216185


Basic Information

Item Value
gene id G216185
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 24459385 ~ 24462851 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU256084
acacactgcgcacacactacacactgcgcacacactacacactgcgcacacactacacactgcgcacacacagacaccgcACATaaactacacactgcacactcactacacacacactgtacatacactacacacacacacattacacactgcacacacacagacaccgcACATaaactacacactgcacacacacacacactacccactgcgcactcactacacactgcgcactcactacacactgcacataaactacacactgcacacacactgcacacacactgcacataaactacacactgcacacacactgctgttagattttaatttacaaacacCTGTAAGAAGAGAACCTCAGGAGAACCTGAACTTGGTAATCCAAACTTAACGCTGCACAGATAAAGagaacacacagtgaacagGAGGCAGGGAGGAGAGTCTCAGTCCCGCGCTCACTCCTTCCTCTCCTTCAGCATGGTCAGGTACAGACCCAGAGACTTCTGGATCGAGTCTCTGCTGACGAAGTTCACAAAGTTTTTCGTGTCGGCGTCTCGGCTGGCCAGCAGGCGGTCCACCGTCGGCTTCCTCAACATGGACTTGCTGATCTCACGGGC
>TU256086
TTTTCAGAAAGGTGAATTGACCTTTTTTCCAAGCAAGAtaaattttctttcttcactAAAATCTGTCCCTCTTTGCTTccatcttttcttctctttctatctcgTGCTCGTTGATCGCTGTGGAACCTCGCTGTGCTCTGTAGCGGTTTATCGTCAGAGcaggtttttttaattcacCTCTTTATGACGTAAATTCATCGTGAATTCGTTGCGACGTCACAAGTGAGACCCAGAAAGGAGGCctaactggataaaaaaaatcagcagcacTTTATCTAAAATGGTGGCAGTATTATCCTACACATCACCAAGCTCCAACTCACAGCTGAACTGATGCTTCATATGAACATTGTTCACATAAAATTCAGAATATATCACGTAAATATGACATAAATATTCCTAACATTCATTtagtattcatttttatattcattgtaAAGCTGAATGAAACAGTGGggcctgttgttgattattttcctacaacagcacacctcgTCATGTTTTTCTTCCTTACTAAATGCAGTCTCAGATCATTTGTGACTGGAAGAGAAAGAAGTAATTGAAAGCGTCATTCCCAGTGACGTGAAACGGTGTGAAACACACTCCAATGATAACGTCATCAGGGCTTATAGAATAAAACGGATGTGAACGAATAGTGAACAGATATAATATGTATACATGACACTTCATGATGTATTCGCTTCTCAGCTCTTATCTTCGAATcaaagatttaaagatttaagatataaacatttaatcagCTTGTGCACTGAGTTCAAATCAAACCTCTTTGTTCTAAATGTAAGAGTTCATGTGGAATTAGTGCTCATGCTAGAAATAtcagccatttttaaaataaaatctgggTGTCCACTTCAGCCCTTTGAGGAGAAGACTGTGTGGACATCCCTGTCCTAAATATTCAACGGATTTATTGATATTCATTATTTCTCACTCCCGACTCATCAAACACTGAAGCACGGcaaaagtcttcagtgtcacAGAGATGAGATTCAGTCCCGCGTTCATGCCTTCCTGTGCTTCAGCACGGTCAGGTACAGGCTCAGAGACTCCTGGAGCAAGTCTTTCTTTGCTGATGAAGCTCACAAAGCTTTTAATGTCGGCGTCTCGGCTGGCCAGCAGTCGGTCCAGCTTCGCTTCAACGCTTTCGGACTTTTCCAAAAATTTTTAGTTgtatctttttaaattttattaagaaCAAAATCACATGCCAAAAAACTAGTTTACTCTCATGTAGCggtgataaataaaattgtaaaaatgaattaaaaataattaactcgCTGTAGCCTCATTTCATTGAAATGCCTTGCACACTGTTATGATGAAGACGTGGAATCAAATCAGGATTTATACAGATGCTTGAAAAGGAAATTCCAGGAATGTAAATGAACTTTCCAACAACAGGTATAAGCGCTGATCATTTGGGATTTCAGTGTCATATTTGCATCGGATGGAACGGTTTTCCACAAAAAATTAACAGGAAAAAGTTAAAAACTATAAATTTTGGGATATTCGGGATATTTTCCAGCTTTTTAGCacatgcatatttaaaaaaaaagtttaattcaTGTACTCTGTATGAAGCCTGTCCAGGGTTACGACTCAGAGCCTcacatatccatccatccatccatccatccatccacgtGTAATACCTCAACCTGAGACTAAACCGAAGTTTTATCAAATCCATGTGAATTGTCCTCACACTGTCAGGTTGTAGTGCTGAAACTTAAACCCTGCAGCTGATTttcacagcactgacacatgtAATTGCTTCCACAACctacactcagtgtgtgtgtgtgtgtgtgagagagactcagagaagTGTTGCGCTTGAAAAGTCGTGTCTCGTACCCATCATCAGCGATTTCAGTCCCAGCAGAGGTCCAGACGAGCTCAAACAAGCTGCTCTGACATCGACACGCtcttgctcgctctctctctctctctctctctcggaaaacacacagaaacccgACGCCTGATCTAAAGTCCCCCGAATAACTGCTCTTCTggttattcattaaaataaaacctcataaagctcctttttttttttgctattgtaattgctattgctattttaaataaagtttacatttcaaatattcataacactattgtttaaagaatttattattatttaaaatattaaaaatgccacttatttaaataaattactatTTATATATTGAAAAAAGTCCTTATGAGGATGATTTATTTAGAGGAAAGTTAATTAGTTCCTCTTTAAGTTCCTGAGCAgaacaattattttatatataaattcttTTTGAAAAAATGCCAGTAGTTTTTGAAGCTGCTGCATAAAAAAATGGACCAATTGATCAAAGATTAATAAATCAGGCTGTTTTCCATCACAGGGAGGGTGATGTTATTGGCGCgggacacacactacacactgcgcacacactacacactacacacacacac

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU256084 False 617 lncRNA 0.51 3 24461934 24462851
TU256086 True 2481 lncRNA 0.37 2 24459385 24461889

Neighbor

gene id symbol gene type direction distance location
abat abat,LOC107690246,LOC107738621,LOC106592407 coding upstream 40839 24385737 ~ 24418546 (+)
mettl22 mettl22 coding upstream 75491 24365746 ~ 24383894 (+)
gsg1l gsg1l,LOC108275613,LOC108436662,LOC103031039,LOC107738642,LOC107690243,LOC106938975 coding upstream 588586 23846609 ~ 23870799 (+)
si:ch211-76l23.4 si:ch211-76l23.4,LOC108256336,LOC101172412 coding upstream 645750 23810299 ~ 23813635 (+)
c13h16orf89 c2h16orf89 coding upstream 668686 23784636 ~ 23790699 (+)
c13h16orf72 c2h16orf72,cunh16orf72,LOC105900007,LOC103025273,LOC107590581,LOC107685917,LOC107738628,LOC103038624 coding downstream 106382 24569233 ~ 24575461 (+)
atf7ip2 atf7ip2 coding downstream 348229 24811080 ~ 24829473 (+)
nubp1 nubp1,LOC107690260,LOC107685912,LOC107590599 coding downstream 404549 24867400 ~ 24896195 (+)
ciita ciita coding downstream 436570 24899421 ~ 24920755 (+)
clec16a clec16a coding downstream 460649 24923500 ~ 24995766 (+)
G216171 NA non-coding upstream 11917 24445073 ~ 24447468 (+)
G216174 NA non-coding upstream 15213 24423766 ~ 24444172 (+)
LOC117598769 NA non-coding upstream 96001 24341688 ~ 24363384 (+)
LOC117598845 NA non-coding upstream 707788 23748207 ~ 23751597 (+)
G215824 NA non-coding upstream 836776 23622372 ~ 23622609 (+)
G216167 NA non-coding downstream 7208 24470059 ~ 24473172 (+)
G216230 NA non-coding downstream 77875 24540726 ~ 24588450 (+)
G216249 NA non-coding downstream 102361 24565212 ~ 24594617 (+)
G216459 grin2a,LOC107733867,LOC107690256,LOC107568390,LOC107685916 non-coding downstream 223587 24686438 ~ 24686669 (+)
G216463 grin2a,LOC107733867,LOC102780805 non-coding downstream 232251 24695102 ~ 24695424 (+)
G216197 NA other upstream 1381 24457070 ~ 24458004 (+)
rbfox1 rbfox1,LOC107733849 other upstream 129385 24038908 ~ 24330000 (+)
fbxl16 fbxl16,LOC107738613,LOC107685932,LOC107568127,LOC107733860,LOC107568165,LOC107690242 other upstream 538982 23894247 ~ 23920403 (+)
igfbp7 igfbp7 other upstream 711254 23742482 ~ 23748131 (+)
LOC113546919 LOC108278588 other upstream 717995 23731454 ~ 23741390 (+)
si:ch211-157c3.4 LOC108278842 other downstream 66828 24529679 ~ 24539117 (+)
G216515 grin2a,LOC107568390,LOC107685916,LOC107690256,LOC108413991 other downstream 334403 24797254 ~ 24797678 (+)
LOC113523791 nacc1,LOC103025552,LOC107577049 other downstream 1794520 26257371 ~ 26301906 (+)
ier2a LOC108261286 other downstream 1842595 26305446 ~ 26306768 (+)

Expression


Co-expression Network