G216197


Basic Information

Item Value
gene id G216197
gene name NA
gene type unknown
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 24457070 ~ 24458004 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU256099
TCAGGGTTCAATACattgtttatttggtttttttttacatttttgtataaaattattattttaaaaaatgtatggtTTGTCccatttttaaagcattatttaatgtatattcaTTGGGATATGTATGTAAGTAGAATCagtataaatagaataaaataagtattttagggagcagtgcagtgtgtcaTTTCAGATCACGTTTCCAGACATGGTTAgacataatatactgtacactgtggGACATTAACCACCTTAAACACCTAAGTAACAGGTTCACtgtgtttctgtaaataataattgaataaaaaaaaacgctgTGTGATTGTTCTACCTTGTCCAGCTCACTCTTCACCTCTGACTCAGGGGCTGTGATTGGCTCTGCCTCCTGTGGGGGTGTGGTTTTTGGAGGTGCAGGAGCCTCCACAATGTCACTTTCTTTAGGCCGTGGAGGAGCCGGAGGTGCAGACGATGACTGTGGAGGAGCCGGAGGTGCAGATGATGACTGTGGAGGAGCCGGAGGTGCAGATGATGACTGTGAAGGAGCCGGAGGTGCAGATGATGACTGTGGAGGAGCAGGAGGTGCAGATGATGACTGTGAAGGAGCCGGAGGTGCAGATGATGACTGTGGAGGACCTATAGGTGCAGATGATGACTGTGGAGGAGCCGGAGGTGGAGATGATGGAGCGTCACAAATGAGAATGACAGATTCCTGTTCTGACGCAGGCAGAGACGCCGAGGCAGGTTCCACAGGAGCTGAGCGCTTCACTTGCTCATC
>TU256100
TCAGGGTTCAATACattgtttatttggtttttttttacatttttgtataaaattattattttaaaaaatgtatggtTTGTCccatttttaaagcattatttaatgtatattcaTTGGGATATGTATGTAAGTAGAATCagtataaatagaataaaataagtattttagggagcagtgcagtgtgtcaTTTCAGATCACGTTTCCAGACATGGTTAgacataatatactgtacactgtggGACATTAACCACCTTAAACACCTAAGTAACAGGTTCACtgtgtttctgtaaataataattgaataaaaaaaaacgctgTGTGATTGTTCTACCTTGTCCAGCTCACTCTTCACCTCTGACTCAGGGGCTGTGATTGGCTCTGCCTCCTGTGGGGGTGTGGTTTTTGGAGGTGCAGGAGCCTCCACAATGTCACTTTCTTTAGGCCGTGGAGGAGCCGGAGGTGCAGACGATGACTGTGGAGGAGCCGGAGGTGCAGACGATGACTGTGGAGGAGCCGGAGGTGCAGATGATGACTGTGGAGGAGCCGGAGGTGGAGATGATGACTGTGAAGGAGCCGGAGGTGCAGATGATGACTGTGGAGGACCTATAGGTGCAGATGATGACTGTGGAGGAGCCGGAGGTGGAGATGATGGAGCGTCACAAATGAGAATGACAGATTCCTGTTCTGACGCAGGCAGAGACGCCGAGGCAGGTTCCACAGGAGCTGAGCGCTTCACTTGCTCATC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU256099 True 775 TUCP 0.45 4 24457070 24458004
TU256100 False 745 TUCP 0.45 2 24457070 24458004

Neighbor

gene id symbol gene type direction distance location
abat abat,LOC107690246,LOC107738621,LOC106592407 coding upstream 38524 24385737 ~ 24418546 (+)
mettl22 mettl22 coding upstream 73176 24365746 ~ 24383894 (+)
gsg1l gsg1l,LOC108275613,LOC108436662,LOC103031039,LOC107738642,LOC107690243,LOC106938975 coding upstream 586271 23846609 ~ 23870799 (+)
si:ch211-76l23.4 si:ch211-76l23.4,LOC108256336,LOC101172412 coding upstream 643435 23810299 ~ 23813635 (+)
c13h16orf89 c2h16orf89 coding upstream 666371 23784636 ~ 23790699 (+)
c13h16orf72 c2h16orf72,cunh16orf72,LOC105900007,LOC103025273,LOC107590581,LOC107685917,LOC107738628,LOC103038624 coding downstream 111229 24569233 ~ 24575461 (+)
atf7ip2 atf7ip2 coding downstream 353076 24811080 ~ 24829473 (+)
nubp1 nubp1,LOC107690260,LOC107685912,LOC107590599 coding downstream 409396 24867400 ~ 24896195 (+)
ciita ciita coding downstream 441417 24899421 ~ 24920755 (+)
clec16a clec16a coding downstream 465496 24923500 ~ 24995766 (+)
G216171 NA non-coding upstream 9602 24445073 ~ 24447468 (+)
G216174 NA non-coding upstream 12898 24423766 ~ 24444172 (+)
LOC117598769 NA non-coding upstream 93686 24341688 ~ 24363384 (+)
LOC117598845 NA non-coding upstream 705473 23748207 ~ 23751597 (+)
G215824 NA non-coding upstream 834461 23622372 ~ 23622609 (+)
G216185 NA non-coding downstream 1381 24459385 ~ 24462851 (+)
G216167 NA non-coding downstream 12055 24470059 ~ 24473172 (+)
G216230 NA non-coding downstream 82722 24540726 ~ 24588450 (+)
G216249 NA non-coding downstream 107208 24565212 ~ 24594617 (+)
G216459 grin2a,LOC107733867,LOC107690256,LOC107568390,LOC107685916 non-coding downstream 228434 24686438 ~ 24686669 (+)
rbfox1 rbfox1,LOC107733849 other upstream 127070 24038908 ~ 24330000 (+)
fbxl16 fbxl16,LOC107738613,LOC107685932,LOC107568127,LOC107733860,LOC107568165,LOC107690242 other upstream 536667 23894247 ~ 23920403 (+)
igfbp7 igfbp7 other upstream 708939 23742482 ~ 23748131 (+)
LOC113546919 LOC108278588 other upstream 715680 23731454 ~ 23741390 (+)
G215621 LOC108277208 other upstream 1286517 23137246 ~ 23170553 (+)
si:ch211-157c3.4 LOC108278842 other downstream 71675 24529679 ~ 24539117 (+)
G216515 grin2a,LOC107568390,LOC107685916,LOC107690256,LOC108413991 other downstream 339250 24797254 ~ 24797678 (+)
LOC113523791 nacc1,LOC103025552,LOC107577049 other downstream 1799367 26257371 ~ 26301906 (+)
ier2a LOC108261286 other downstream 1847442 26305446 ~ 26306768 (+)

Expression


Co-expression Network