si:ch211-157c3.4 (LOC108278842)


Basic Information

Item Value
gene id si:ch211-157c3.4
gene name LOC108278842
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 24529679 ~ 24539117 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU256141
TAAGGGCTCATTGTTATCACAAAAACAGGTTATTCAGAGAGCAAGAGGTAGAGAAAAGGTATTGAGTTCCTGACTCAGGcttatgcatattcatagaggAGGTGAATGCGTATGAAAGCGCGCCCTCGTCGAGGAGGGTGGAGTGGAGGGAAGGCTGTGAAAAGCTCCAGGTCTCGTCCTAAACTGGATTCAGTCGCACCcaagacagcagcagcagcagcaggTTACGGCTAAACAGAGAAGGAAATgagttcaggaataaaagacCCTCCACCCTACGTCATACCGGTGGATGACCAAGGGGACAACGTGAAGGTGTACAAGGTGCACACGCCGTTCAACCCACAGTCCACTTCCGTCAATCCAGATTACAGAGTGCAGACCCAAGCCACGACAGTTCACACGACGTCCACTGACAGGAACAAGTTTGTGAGTTATGAATCGGAGCTCGGACGCTCTCCCGGCATGGTCACCTGCACCAGCTGCCGAGAGCAAGTGCTCACCCAGGTCACCTATAAAGTGGGAATGTACGCCTGGCTCATGTGCCTCCTCTTCATCCTGTGCGGGTTCGTGATTGGCTGCTGCCTCCTGCCGTTCTGCCTCAAGTTCTTCAAAGATGTCTACCACTCCTGCCCCAAGTGTCATCGTATTCTGCACGTGGAGAAGAAGCGATGTTGCTGACCCCGGCCAAACTCCTCACAGCTAACGCTCACGCCACAGCTGCAGAAAACAAACCCACAAACCACAACACGCCTACCACCACCATCTAGTCGACGTGATCATGTATGAACATGAGATTAGCTGATGGACACTACGGCACACTTTAGAACCCTTACCatgtattattatcatcattatgcTATTTTTGTAATATGTTACTGCAATACACAACCTCGGCATTTTGAGGGACCCGTCGCTTTTTCCTTGCTTCAGACATCTGCAAGTTAGGACGCGTTTGATTTGCATGATCTTCTGAAGTTCTTTTTCTGATCTACAAGTTCCATGCGTCTGCGTTTTTTGCTCTCTTTTCAGGTGTTCAGTGTTCTTGTTCGAGCAAAAACGTATCCCGGACGCTAGTGTTCGACAGAGAAAGCCATCAAAATTGTCGACAGTGTCATGATTAAGagtcacaaaaaataaaacatcatatcTTTGCCATTTTCTAACCTATTTAGCAACCTAAAGAGGTCATTtgaaatcatatatatattcatttttcacaggTTTTGTTAGcaaacatgagctaacctgacaagcTTGCTATAGCATGtctataaatgtaattattcttTGCTGCTAATGCTAACCAGTTAGCTTACATGTGCTatcctgacaggatttctgggAAGTTATGCTCatacatgttcatgttcattaaagATGCTAGCCTAAATAAGCTAGCTTGACAGGATTCTAAGaggatttttaaatcatattcatcattattcTTCACTGCTAATGACAGTTAGCCTGCTAACATGAGAAAACCTGACAAGATTTTTCTgattggatttattttttaattcttgctaattagCTAACTTGAGCTAACGACAGGATTTCTGATagaatttttaaagtaaattgaTCAGTATCATTAttcttcactgctaatgcttGCAAGCTAGCTACCTaacaagaaaaatatttctgagaagatttttAAGTCATAAAAATTCATTATCTTCATTGAacatgctagccagctagcatacatgagctaacctgactgGATTTTGAGTCAAATTCTGCTAATGcttgtgagctagctagctagctaacatgagctaacctgacagaacttctgagaggatttttacaGCACATTTATAAAGATAAATTTTTATTAGAAAGAAACACCACATACATTCCTAAATAATGActtttcttaaaatggctgatgtTATTACGTTGATGCTAATTAGGCATGAGCTCTAGCGTTTGGGACGAAGCCGTGGACTGGACTGAAAAACGCTGATCTACTCCAGAGGGTTTAAGTTCCTCTGGACTTCATGCACTCGAACACAAATCACCTGAACAGATGAATCCGGTGTTTTATATGAAGGAAATAAATGTGTAGTGTCTACAGTGCTGAGGAAGGCAACTGAGAACTACTCACACcataactgttattattataatatattactgAATTTCAGGATTTCTCACAGAAAATGGGGTGTGGATATTATCGGGGCGTCGGGCTCTGCAAGTGTTATATAAATGATTTTGATCATGCGAAATAGTAAACTGCTTttgatatatttctgtattatgAGGCAATAAGGCACCAAGGTACCGGTACCATCAGGTTCTCAGGTTCTCCATCAGACACAAATTTAGCCCTGGCGTTCAACACTAGTAAATTAgacttcattaaaataaaaaaataaataaaaatccatagGAAACCCTTGTGCTTTGTACATAATTCTCCATAAATCTGAATAATTTttgaatgtatatttttattgcagtGTAGAGCTCT
>XM_026947091.2
tcatagaggAGGTGAATGCGTATGAAAGCGCGCCCTCGTCGAGGAGGGTGGAGTGGAGGGAAGGCTGTGAAAAGCTCCAGGTCTCGTCCTAAACTGGATTCAGTCGCACCcaagacagcagcagcagcagcaggTTACGGCTAAACAGAGAAGGAAATgagttcaggaataaaagacCCTCCACCCTACGTCATACCGGTGGATGACCAAGGGGACAACGTGAAGGTGTACAAGGTGCACACGCCGTTCAACCCACAGTCCACTTCCGTCAATCCAGATTACAGAGTGCAGACCCAAGCCACGACAGTTCACACGACGTCCACTGACAGGAACAAGTTTGTGAGTTATGAATCGGAGCTCGGACGCTCTCCCGGCATGGTCACCTGCACCAGCTGCCGAGAGCAAGTGCTCACCCAGGTCACCTATAAAGTGGGAATGTACGCCTGGCTCATGTGCCTCCTCTTCATCCTGTGCGGGTTCGTGATTGGCTGCTGCCTCCTGCCGTTCTGCCTCAAGTTCTTCAAAGATGTCTACCACTCCTGCCCCAAGTGTCATCGTATTCTGCACGTGGAGAAGAAGCGATGTTGCTGACCCCGGCCAAACTCCTCACAGCTAACGCTCACGCCACAGCTGCAGAAAACAAACCCACAAACCACAACACGCCTACCACCACCATCTAGTCGACGTGATCATGTATGAACATGAGATTAGCTGATGGACACTACGGCACACTTTAGAACCCTTACCatgtattattatcatcattatgcTATTTTTGTAATATGTTACTGCAATACACAACCTCGGCATTTTGAGGGACCCGTCGCTTTTTCCTTGCTTCAGACATCTGCAAGTTAGGACGCGTTTGATTTGCATGATCTTCTGAAGTTCTTTTTCTGATCTACAAGTTCCATGCGTCTGCGTTTTTTGCTCTCTTTTCAGGTGTTCAGTGTTCTTGTTCGAGCAAAAACGTATCCCGGACGCTAGTGTTCGACAGAGAAAGCCATCAAAATTGTCGACAGTGTCATGATTAAGagtcacaaaaaataaaacatcatatcTTTGCCATTTTCTAACCTATTTAGCAACCTAAAGAGGTCATTtgaaatcatatatatattcatttttcacaggTTTTGTTAGcaaacatgagctaacctgacaagcTTGCTATAGCATGtctataaatgtaattattcttTGCTGCTAATGCTAACCAGTTAGCTTACATGTGCTatcctgacaggatttctgggAAGTTATGCTCatacatgttcatgttcattaaagATGCTAGCCTAAATAAGCTAGCTTGACAGGATTCTAAGaggatttttaaatcatattcatcattattcTTCACTGCTAATGACAGTTAGCCTGCTAACATGAGAAAACCTGACAAGATTTTTCTgattggatttattttttaattcttgctaattagCTAACTTGAGCTAACGACAGGATTTCTGATagaatttttaaagtaaattgaTCAGTATCATTAttcttcactgctaatgcttGCAAGCTAGCTACCTaacaagaaaaatatttctgagaagatttttAAGTCATAAAAATTCATTATCTTCATTGAacatgctagccagctagcatacatgagctaacctgactgGATTTTGAGTCAAATTCTGCTAATGcttgtgagctagctagctagctaacatgagctaacctgacagaacttctgagaggattttttaaagcaaattcctaaataatgttattgtttactgctaatgcttgctagctagctaacatgagctaacctgacagaacttctgagaggattttttaCAGCAAATTCCTAAATATCGTTATTGTTTTTGCTAatgcttgctagctagctaacctgagctaacctgacagaacttctgagaggatttttacaGCACATTTATAAAGATAAATTTTTATTAGAAAGAAACACCACATACATTCCTAAATAATGActtttcttaaaatggctgatgtTATTACGTTGATGCTAATTAGGCATGAGCTCTAGCGTTTGGGACGAAGCCGTGGACTGGACTGAAAAACGCTGATCTACTCCAGAGGGTTTAAGTTCCTCTGGACTTCATGCACTCGAACACAAATCACCTGAACAGATGAATCCGGTGTTTTATATGAAGGAAATAAATGTGTAGTGTCTACAGTGCTGAGGAAGGCAACTGAGAACTACTCACACcataactgttattattataatatattactgAATTTCAGGATTTCTCACAGAAAATGGGGTGTGGATATTATCGGGGCGTCGGGCTCTGCAAGTGTTATATAAATGATTTTGATCATGCGAAATAGTAAACTGCTTttgatatatttctgtattatgAGGCAATAAGGCACCAAGGTACCGGTACCATCAGGTTCTCAGGTTCTCCATCAGACACAAATTTAGCCCTGGCGTTCAACACTAGTAAATTAgacttcattaaaataaaaaaataaataaaaatccatagGAAACCCTTGTGCTTTGTACATAATTCTCCATAAATCTGAATAATTTttgaatgtatatttttattgcagtGTAGAGCTCTGCTACAATGATGTGCAAGTCACTGGAATTGAGTATCTCTGccttatcattaaaaaaaatcattttattaactgaa
>XM_034310263.1
CGCGCCCTCGTCGAGGAGGGTGGAGTGGAGGGAAGGCTGTGAAAAGCTCCAGGTCTCGTCCTAAACTGGATTCAGTCGCACCcaagacagcagcagcagcagGTTACGGCTAAACAGAGAAGGAAATgagttcaggaataaaagacCCTCCACCCTACGTCATACCGGTGGATGACCAAGGGGACAACGTGAAGGTGTACAAGGTGCACACGCCGTTCAACCCACAGTCCACTTCCGTCAATCCAGATTACAGAGTGCAGACCCAAGCCACGACAGTTCACACGACGTCCACTGACAGGAACAAGTTTGTGAGTTATGAATCGGAGCTCGGACGCTCTCCCGGCATGGTCACCTGCACCAGCTGCCGAGAGCAAGTGCTCACCCAGGTCACCTATAAAGTGGGAATGTACGCCTGGCTCATGTGCCTCCTCTTCATCCTGTGCGGGTTCGTGATTGGCTGCTGCCTCCTGCCGTTCTGCCTCAAGTTCTTCAAAGATGTCTACCACTCCTGCCCCAAGTGTCATCGTATTCTGCACGTGGAGAAGAAGCGATGTTGCTGACCCCGGCCAAACTCCTCACAGCTAACGCTCACGCCACAGCTGCAGAAAACAAACCCACAAACCACAACACGCCTACCACCACCATCTAGTCGACGTGATCATGTATGAACATGAGATTAGCTGATGGACACTACGGCACACTTTAGAACCCTTACCatgtattattatcatcattatgcTATTTTTGTAATATGTTACTGCAATACACAACCTCGGCATTTTGAGGGACCCGTCGCTTTTTCCTTGCTTCAGACATCTGCAAGTTAGGACGCGTTTGATTTGCATGATCTTCTGAAGTTCTTTTTCTGATCTACAAGTTCCATGCGTCTGCGTTTTTTGCTCTCTTTTCAGGTGTTCAGTGTTCTTGTTCGAGCAAAAACGTATCCCGGACGCTAGTGTTCGACAGAGAAAGCCATCAAAATTGTCGACAGTGTCATGATTAAGagtcacaaaaaataaaacatcatatcTTTGCCATTTTCTAACCTATTTAGCAACCTAAAGAGGTCATTtgaaatcatatatatattcatttttcacaggTTTTGTTAGcaaacatgagctaacctgacaagcTTGCTATAGCATGtctataaatgtaattattcttTGCTGCTAATGCTAACCAGTTAGCTTACATGTGCTatcctgacaggatttctgggAAGTTATGCTCatacatgttcatgttcattaaagATGCTAGCCTAAATAAGCTAGCTTGACAGGATTCTAAGaggatttttaaatcatattcatcattattcTTCACTGCTAATGACAGTTAGCCTGCTAACATGAGAAAACCTGACAAGATTTTTCTgattggatttattttttaattcttgctaattagCTAACTTGAGCTAACGACAGGATTTCTGATagaatttttaaagtaaattgaTCAGTATCATTAttcttcactgctaatgcttGCAAGCTAGCTACCTaacaagaaaaatatttctgagaagatttttAAGTCATAAAAATTCATTATCTTCATTGAacatgctagccagctagcatacatgagctaacctgactgGATTTTGAGTCAAATTCTGCTAATGcttgtgagctagctagctagctaacatgagctaacctgacagaacttctgagaggattttttaaagcaaattcctaaataatgttattgtttactgctaatgcttgctagctagctaacatgagctaacctgacagaacttctgagaggattttttaCAGCAAATTCCTAAATATCGTTATTGTTTTTGCTAatgcttgctagctagctaacctgagctaacctgacagaacttctgagaggatttttacaGCACATTTATAAAGATAAATTTTTATTAGAAAGAAACACCACATACATTCCTAAATAATGActtttcttaaaatggctgatgtTATTACGTTGATGCTAATTAGGCATGAGCTCTAGCGTTTGGGACGAAGCCGTGGACTGGACTGAAAAACGCTGATCTACTCCAGAGGGTTTAAGTTCCTCTGGACTTCATGCACTCGAACACAAATCACCTGAACAGATGAATCCGGTGTTTTATATGAAGGAAATAAATGTGTAGTGTCTACAGTGCTGAGGAAGGCAACTGAGAACTACTCACACcataactgttattattataatatattactgAATTTCAGGATTTCTCACAGAAAATGGGGTGTGGATATTATCGGGGCGTCGGGCTCTGCAAGTGTTATATAAATGATTTTGATCATGCGAAATAGTAAACTGCTTttgatatatttctgtattatgAGGCAATAAGGCACCAAGGTACCGGTACCATCAGGTTCTCAGGTTCTCCATCAGACACAAATTTAGCCCTGGCGTTCAACACTAGTAAATTAgacttcattaaaataaaaaaataaataaaaatccatagGAAACCCTTGTGCTTTGTACATAATTCTCCATAAATCTGAATAATTTttgaatgtatatttttattgcagtGTAGAGCTCTGCTACAATGATGTGCAAGTCACTGGAATTGAGTATCTCTGccttatcattaaaaaaaatcattttattaactgaa

Function

NR:

description
PREDICTED: lipopolysaccharide-induced tumor necrosis factor-alpha factor homolog

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU256141 False 2488 TUCP 0.41 6 24529679 24539042
XM_026947091.2 True 2660 mRNA 0.40 5 24529769 24539117
XM_034310263.1 False 2629 mRNA 0.40 5 24529797 24539117

Neighbor

gene id symbol gene type direction distance location
abat abat,LOC107690246,LOC107738621,LOC106592407 coding upstream 111133 24385737 ~ 24418546 (+)
mettl22 mettl22 coding upstream 145785 24365746 ~ 24383894 (+)
gsg1l gsg1l,LOC108275613,LOC108436662,LOC103031039,LOC107738642,LOC107690243,LOC106938975 coding upstream 658880 23846609 ~ 23870799 (+)
si:ch211-76l23.4 si:ch211-76l23.4,LOC108256336,LOC101172412 coding upstream 716044 23810299 ~ 23813635 (+)
c13h16orf89 c2h16orf89 coding upstream 738980 23784636 ~ 23790699 (+)
c13h16orf72 c2h16orf72,cunh16orf72,LOC105900007,LOC103025273,LOC107590581,LOC107685917,LOC107738628,LOC103038624 coding downstream 30116 24569233 ~ 24575461 (+)
atf7ip2 atf7ip2 coding downstream 271963 24811080 ~ 24829473 (+)
nubp1 nubp1,LOC107690260,LOC107685912,LOC107590599 coding downstream 328283 24867400 ~ 24896195 (+)
ciita ciita coding downstream 360304 24899421 ~ 24920755 (+)
clec16a clec16a coding downstream 384383 24923500 ~ 24995766 (+)
G216167 NA non-coding upstream 56507 24470059 ~ 24473172 (+)
G216185 NA non-coding upstream 66828 24459385 ~ 24462851 (+)
G216171 NA non-coding upstream 82211 24445073 ~ 24447468 (+)
G216174 NA non-coding upstream 85507 24423766 ~ 24444172 (+)
LOC117598769 NA non-coding upstream 166295 24341688 ~ 24363384 (+)
G216230 NA non-coding downstream 1609 24540726 ~ 24588450 (+)
G216249 NA non-coding downstream 26095 24565212 ~ 24594617 (+)
G216459 grin2a,LOC107733867,LOC107690256,LOC107568390,LOC107685916 non-coding downstream 147321 24686438 ~ 24686669 (+)
G216463 grin2a,LOC107733867,LOC102780805 non-coding downstream 155985 24695102 ~ 24695424 (+)
G216467 NA non-coding downstream 167503 24706620 ~ 24706879 (+)
G216197 NA other upstream 71675 24457070 ~ 24458004 (+)
rbfox1 rbfox1,LOC107733849 other upstream 199679 24038908 ~ 24330000 (+)
fbxl16 fbxl16,LOC107738613,LOC107685932,LOC107568127,LOC107733860,LOC107568165,LOC107690242 other upstream 609276 23894247 ~ 23920403 (+)
igfbp7 igfbp7 other upstream 781548 23742482 ~ 23748131 (+)
LOC113546919 LOC108278588 other upstream 788289 23731454 ~ 23741390 (+)
G216515 grin2a,LOC107568390,LOC107685916,LOC107690256,LOC108413991 other downstream 258137 24797254 ~ 24797678 (+)
LOC113523791 nacc1,LOC103025552,LOC107577049 other downstream 1718254 26257371 ~ 26301906 (+)
ier2a LOC108261286 other downstream 1766329 26305446 ~ 26306768 (+)

Expression


Co-expression Network