G216230


Basic Information

Item Value
gene id G216230
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 24540726 ~ 24588450 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU256144
AGGAAAACGTCTCTTCAGGATCACAATGTTCCATCAATAGTTGCAGtagcttttatagaaaattttaTTCAACATACATTTTTCAGCAAAAAGGCAATATACAGgaatagttgttgttgttgtacacTGCTGCTACACGGAGGAATTAGACTGGGGGCTGGGAATCAGAATCAAAAGATGTGATCCGCATCTGCACTTAAAACGAACTGTAGCAAGTAgttgaggaaaataaaataaaacggtgtccaaaataaaactacacacaATGAATATGAACATCTGAATCGATCTGTACCCAACAAAAGTGTGTCTTTAATTTTACATGTccattctttttaaatatacaattttaaaCGTTTGTCTTTACAAAGCAGACTACGCACTTCGGGAGCATGACGACTCCtgtgcttagaaaaaaaaaaaaaaaaaaaaataatagggGAAAGagacaaaactaaacaaacaaacaaaaaaaaggttcgTTTTAATGCTGGTTTCTCTACATCCTGAACCAGTCTAGCGAAAGTCTGCAGCCTCCTGCTAATGTAGGACGAACGTGGAGCAACACCGCCTCCAATCCCACGGCAAAAACGACAGAGGAACGAAAGAGGGtgaaaaagcagagagagagagaaagcgtaAGAAGGTGGgctgggggagagagagagagagagagaaaaggaacaCACGGGGGGCCTCAAGGCCAAAACACGACCAAAGATTACATTTACCGATGTGGAGAAATGCAAAACCTTTGATATTAAGTGCCAACGTGCAAAATGAAGTACAGACGATTCATTtcgtttgttgtttgtttttaaaacgaTGCTGTGgatctttatttttatcataCAAGTTTTTCATGAAAGATACGACTGAAATCCTTAACTGAACTAAGTGAGAATTgtgtaaacatgaaaaaaaaaaaacctagtttTGCGCTAAGGGACGAGAAAACACGGAACTGCTTCAGAGTTATCAGCAAGCTTTAGCCATCAGTGGTGTCCTTTTTGGTTAAAAGTTGGTTAAATATCCTCGACATCCATCCGTTCgtctggttttttttctgtgtttttttttt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU256144 True 1081 lncRNA 0.38 3 24540726 24588450

Neighbor

gene id symbol gene type direction distance location
abat abat,LOC107690246,LOC107738621,LOC106592407 coding upstream 122180 24385737 ~ 24418546 (+)
mettl22 mettl22 coding upstream 156832 24365746 ~ 24383894 (+)
gsg1l gsg1l,LOC108275613,LOC108436662,LOC103031039,LOC107738642,LOC107690243,LOC106938975 coding upstream 669927 23846609 ~ 23870799 (+)
si:ch211-76l23.4 si:ch211-76l23.4,LOC108256336,LOC101172412 coding upstream 727091 23810299 ~ 23813635 (+)
c13h16orf89 c2h16orf89 coding upstream 750027 23784636 ~ 23790699 (+)
atf7ip2 atf7ip2 coding downstream 222630 24811080 ~ 24829473 (+)
nubp1 nubp1,LOC107690260,LOC107685912,LOC107590599 coding downstream 278950 24867400 ~ 24896195 (+)
ciita ciita coding downstream 310971 24899421 ~ 24920755 (+)
clec16a clec16a coding downstream 335050 24923500 ~ 24995766 (+)
pigq pigq,LOC107690265,LOC107733876,LOC107729199,LOC107590576 coding downstream 432819 25021269 ~ 25033735 (+)
G216167 NA non-coding upstream 67554 24470059 ~ 24473172 (+)
G216185 NA non-coding upstream 77875 24459385 ~ 24462851 (+)
G216171 NA non-coding upstream 93258 24445073 ~ 24447468 (+)
G216174 NA non-coding upstream 96554 24423766 ~ 24444172 (+)
LOC117598769 NA non-coding upstream 177342 24341688 ~ 24363384 (+)
G216459 grin2a,LOC107733867,LOC107690256,LOC107568390,LOC107685916 non-coding downstream 97988 24686438 ~ 24686669 (+)
G216463 grin2a,LOC107733867,LOC102780805 non-coding downstream 106652 24695102 ~ 24695424 (+)
G216467 NA non-coding downstream 118170 24706620 ~ 24706879 (+)
G216488 grin2a,LOC107685916,LOC107690256,LOC107568390,LOC108413991 non-coding downstream 150511 24738961 ~ 24739655 (+)
LOC117599007 NA non-coding downstream 241093 24829543 ~ 24854293 (+)
si:ch211-157c3.4 LOC108278842 other upstream 1609 24529679 ~ 24539117 (+)
G216197 NA other upstream 82722 24457070 ~ 24458004 (+)
rbfox1 rbfox1,LOC107733849 other upstream 210726 24038908 ~ 24330000 (+)
fbxl16 fbxl16,LOC107738613,LOC107685932,LOC107568127,LOC107733860,LOC107568165,LOC107690242 other upstream 620323 23894247 ~ 23920403 (+)
igfbp7 igfbp7 other upstream 792595 23742482 ~ 23748131 (+)
G216515 grin2a,LOC107568390,LOC107685916,LOC107690256,LOC108413991 other downstream 208804 24797254 ~ 24797678 (+)
LOC113523791 nacc1,LOC103025552,LOC107577049 other downstream 1668921 26257371 ~ 26301906 (+)
ier2a LOC108261286 other downstream 1716996 26305446 ~ 26306768 (+)

Expression


Co-expression Network