G216515 (grin2a,LOC107568390,LOC107685916,LOC107690256,LOC108413991)


Basic Information

Item Value
gene id G216515
gene name grin2a,LOC107568390,LOC107685916,LOC107690256,LOC108413991
gene type unknown
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 24797254 ~ 24797678 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU256462
CGAATGCACGCTTACCTTGTCCGCCATGATCATGGACGATCCGCCGTGAATCCCCAGGATGGGTATCAACGTCTGCGaggaaataaaatccaaaatctgGGCGATGGCTTCCTGGTCGGTGCCGTCGCCGAACACCACGCCGTGGATCTTAGTCCCGGACATGAGGTCGCACACATGAGTGATGATGCTCTTCGGATCCGTTTCGTTGACCAGCAGCGTGACCACGTTGACGTCGATCGGGTCGTCCTTGCTCCACAGGGCGCGGATGTCCCGGTCCGAGATGTAGCGCGTTCGGCCCAGGATCACGGCAATGTTCAGAATGGGAACCTTCTCGGCGGCGTGGACCACGCCCACCAGGGTGAGGAGAGCCGGGAGCATCAGGAGTGCCAAGCTGGAAAACCCCATAGTGCTCAACTTCATTCCCT

Function

symbol description
grin2a Enables glutamate-gated calcium ion channel activity. Involved in calcium ion transmembrane import into cytosol and response to ethanol. Located in plasma membrane. Is integral component of plasma membrane. Part of NMDA selective glutamate receptor complex. Implicated in Huntington's disease; bipolar disorder; and schizophrenia. Biomarker of Alzheimer's disease and vascular dementia.

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU256462 True 425 TUCP 0.59 1 24797254 24797678

Neighbor

gene id symbol gene type direction distance location
c13h16orf72 c2h16orf72,cunh16orf72,LOC105900007,LOC103025273,LOC107590581,LOC107685917,LOC107738628,LOC103038624 coding upstream 221793 24569233 ~ 24575461 (+)
abat abat,LOC107690246,LOC107738621,LOC106592407 coding upstream 378708 24385737 ~ 24418546 (+)
mettl22 mettl22 coding upstream 413360 24365746 ~ 24383894 (+)
gsg1l gsg1l,LOC108275613,LOC108436662,LOC103031039,LOC107738642,LOC107690243,LOC106938975 coding upstream 926455 23846609 ~ 23870799 (+)
si:ch211-76l23.4 si:ch211-76l23.4,LOC108256336,LOC101172412 coding upstream 983619 23810299 ~ 23813635 (+)
atf7ip2 atf7ip2 coding downstream 13402 24811080 ~ 24829473 (+)
nubp1 nubp1,LOC107690260,LOC107685912,LOC107590599 coding downstream 69722 24867400 ~ 24896195 (+)
ciita ciita coding downstream 101743 24899421 ~ 24920755 (+)
clec16a clec16a coding downstream 125822 24923500 ~ 24995766 (+)
pigq pigq,LOC107690265,LOC107733876,LOC107729199,LOC107590576 coding downstream 223591 25021269 ~ 25033735 (+)
G216488 grin2a,LOC107685916,LOC107690256,LOC107568390,LOC108413991 non-coding upstream 57599 24738961 ~ 24739655 (+)
G216467 NA non-coding upstream 90375 24706620 ~ 24706879 (+)
G216463 grin2a,LOC107733867,LOC102780805 non-coding upstream 101830 24695102 ~ 24695424 (+)
G216459 grin2a,LOC107733867,LOC107690256,LOC107568390,LOC107685916 non-coding upstream 110585 24686438 ~ 24686669 (+)
G216249 NA non-coding upstream 202637 24565212 ~ 24594617 (+)
LOC117599007 NA non-coding downstream 31865 24829543 ~ 24854293 (+)
G216577 NA non-coding downstream 72440 24870118 ~ 24912805 (+)
G216652 NA non-coding downstream 227406 25025084 ~ 25025573 (+)
G216631 NA non-coding downstream 246701 25044379 ~ 25054895 (+)
G216668 NA non-coding downstream 358583 25156261 ~ 25157543 (+)
si:ch211-157c3.4 LOC108278842 other upstream 258137 24529679 ~ 24539117 (+)
G216197 NA other upstream 339250 24457070 ~ 24458004 (+)
rbfox1 rbfox1,LOC107733849 other upstream 467254 24038908 ~ 24330000 (+)
fbxl16 fbxl16,LOC107738613,LOC107685932,LOC107568127,LOC107733860,LOC107568165,LOC107690242 other upstream 876851 23894247 ~ 23920403 (+)
igfbp7 igfbp7 other upstream 1049123 23742482 ~ 23748131 (+)
LOC113523791 nacc1,LOC103025552,LOC107577049 other downstream 1459693 26257371 ~ 26301906 (+)
ier2a LOC108261286 other downstream 1507768 26305446 ~ 26306768 (+)

Expression


Co-expression Network