G216577


Basic Information

Item Value
gene id G216577
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 24870118 ~ 24912805 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU256530
aaacacacacacacacacacacacctgctgtatgtGTAAAGGGCTTTGTTCTTCTCTTTTGTATAATTCTGTAGATTAGTAACAGAAGCCCTGAGCTAGTGGAACATCTGGTGCTAAGTAGTGAACAGGGTgatgtatgtgtgatgtgtgggatgtgtgtgtgtactgatgagtgtgatgtgtgtgggatgtgtgtgatgtgtgtgatgtgtggtgtgggatgtgcgtgtgtgtactgATGAgcgtgatgtgtgtgatgtg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU256530 True 261 lncRNA 0.45 2 24870118 24912805

Neighbor

gene id symbol gene type direction distance location
atf7ip2 atf7ip2 coding upstream 40645 24811080 ~ 24829473 (+)
c13h16orf72 c2h16orf72,cunh16orf72,LOC105900007,LOC103025273,LOC107590581,LOC107685917,LOC107738628,LOC103038624 coding upstream 294657 24569233 ~ 24575461 (+)
abat abat,LOC107690246,LOC107738621,LOC106592407 coding upstream 451572 24385737 ~ 24418546 (+)
mettl22 mettl22 coding upstream 486224 24365746 ~ 24383894 (+)
gsg1l gsg1l,LOC108275613,LOC108436662,LOC103031039,LOC107738642,LOC107690243,LOC106938975 coding upstream 999319 23846609 ~ 23870799 (+)
clec16a clec16a coding downstream 10695 24923500 ~ 24995766 (+)
pigq pigq,LOC107690265,LOC107733876,LOC107729199,LOC107590576 coding downstream 108464 25021269 ~ 25033735 (+)
rab40c rab40c,LOC103366693,LOC107690266,LOC107567894,LOC107685905,LOC107590575 coding downstream 123119 25035924 ~ 25053158 (+)
xylt1 xylt1,LOC107590574,LOC107729195,LOC107686990,LOC107567884,LOC107733871,LOC107690267 coding downstream 242731 25155536 ~ 25221273 (+)
rpl14 rpl14,LOC107710319,LOC107688416,LOC107654689,LOC107706260 coding downstream 276046 25188851 ~ 25691424 (+)
LOC117599007 NA non-coding upstream 15825 24829543 ~ 24854293 (+)
G216488 grin2a,LOC107685916,LOC107690256,LOC107568390,LOC108413991 non-coding upstream 130463 24738961 ~ 24739655 (+)
G216467 NA non-coding upstream 163239 24706620 ~ 24706879 (+)
G216463 grin2a,LOC107733867,LOC102780805 non-coding upstream 174694 24695102 ~ 24695424 (+)
G216459 grin2a,LOC107733867,LOC107690256,LOC107568390,LOC107685916 non-coding upstream 183449 24686438 ~ 24686669 (+)
G216652 NA non-coding downstream 112279 25025084 ~ 25025573 (+)
G216631 NA non-coding downstream 131574 25044379 ~ 25054895 (+)
G216668 NA non-coding downstream 243456 25156261 ~ 25157543 (+)
G216674 NA non-coding downstream 244875 25157680 ~ 25185402 (+)
G216675 NA non-coding downstream 253695 25166500 ~ 25189043 (+)
G216515 grin2a,LOC107568390,LOC107685916,LOC107690256,LOC108413991 other upstream 72440 24797254 ~ 24797678 (+)
si:ch211-157c3.4 LOC108278842 other upstream 331001 24529679 ~ 24539117 (+)
G216197 NA other upstream 412114 24457070 ~ 24458004 (+)
rbfox1 rbfox1,LOC107733849 other upstream 540118 24038908 ~ 24330000 (+)
fbxl16 fbxl16,LOC107738613,LOC107685932,LOC107568127,LOC107733860,LOC107568165,LOC107690242 other upstream 949715 23894247 ~ 23920403 (+)
LOC113523791 nacc1,LOC103025552,LOC107577049 other downstream 1344566 26257371 ~ 26301906 (+)
ier2a LOC108261286 other downstream 1392641 26305446 ~ 26306768 (+)

Expression


Co-expression Network