G216686


Basic Information

Item Value
gene id G216686
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 25230204 ~ 25230472 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU256668
gatttgtgttcattcagctacaagagcattagtgaggtcaggcgctgatgttgggatgtcgaggaggtctggggttcagtcggtgttccagttcatcccaaaggtgttcagtggggttgaggtcagggctctgtgcaggacactcgagttcttccactccaaccttcacacaccatgtcttcatggagctcgctttgtgcacaggagcattgtcatgctggaacaggtttgggcctcttagttccagtgaagggaaactgtaatgctac

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU256668 True 269 lncRNA 0.51 1 25230204 25230472

Neighbor

gene id symbol gene type direction distance location
xylt1 xylt1,LOC107590574,LOC107729195,LOC107686990,LOC107567884,LOC107733871,LOC107690267 coding upstream 8931 25155536 ~ 25221273 (+)
rab40c rab40c,LOC103366693,LOC107690266,LOC107567894,LOC107685905,LOC107590575 coding upstream 177046 25035924 ~ 25053158 (+)
pigq pigq,LOC107690265,LOC107733876,LOC107729199,LOC107590576 coding upstream 196469 25021269 ~ 25033735 (+)
clec16a clec16a coding upstream 234438 24923500 ~ 24995766 (+)
ciita ciita coding upstream 309449 24899421 ~ 24920755 (+)
c13h17orf75 c2h17orf75,cunh17orf75,zgc:153240,LOC107729180,LOC107590573,LOC107690268,LOC107567861 coding downstream 38392 25268864 ~ 25278367 (+)
trnai-uau_7 NA coding downstream 124304 25354776 ~ 25354868 (+)
trnai-uau_8 NA coding downstream 125028 25355500 ~ 25355592 (+)
LOC113523790 epha10,LOC108273957,LOC108413484,LOC107688368,LOC107602377,LOC107654743 coding downstream 158305 25388777 ~ 25488704 (+)
prdm1b LOC108260590 coding downstream 311259 25541731 ~ 25554972 (+)
G216675 NA non-coding upstream 41161 25166500 ~ 25189043 (+)
G216674 NA non-coding upstream 44802 25157680 ~ 25185402 (+)
G216668 NA non-coding upstream 72661 25156261 ~ 25157543 (+)
G216631 NA non-coding upstream 175309 25044379 ~ 25054895 (+)
G216652 NA non-coding upstream 204631 25025084 ~ 25025573 (+)
G216672 NA non-coding downstream 31584 25262056 ~ 25267110 (+)
G216817 NA non-coding downstream 165150 25395622 ~ 25395883 (+)
G217035 cacna1i,LOC108276491,LOC102291313,LOC103368285 non-coding downstream 565832 25796304 ~ 25890447 (+)
G217082 NA non-coding downstream 669602 25900074 ~ 25901489 (+)
G217175 NA non-coding downstream 837276 26067748 ~ 26072680 (+)
G216515 grin2a,LOC107568390,LOC107685916,LOC107690256,LOC108413991 other upstream 432526 24797254 ~ 24797678 (+)
si:ch211-157c3.4 LOC108278842 other upstream 691087 24529679 ~ 24539117 (+)
G216197 NA other upstream 772200 24457070 ~ 24458004 (+)
rbfox1 rbfox1,LOC107733849 other upstream 900204 24038908 ~ 24330000 (+)
fbxl16 fbxl16,LOC107738613,LOC107685932,LOC107568127,LOC107733860,LOC107568165,LOC107690242 other upstream 1309801 23894247 ~ 23920403 (+)
LOC113523791 nacc1,LOC103025552,LOC107577049 other downstream 1026899 26257371 ~ 26301906 (+)
ier2a LOC108261286 other downstream 1074974 26305446 ~ 26306768 (+)

Expression


Co-expression Network