G216817


Basic Information

Item Value
gene id G216817
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 25395622 ~ 25395883 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU256812
tagcagtgtagtgtaactgtaacagtgtagtgtaactgtgtagcagtgtagtgtaacagtgtagtgtaacagtgtactgtagcagtgtagtgtaactgtagcagtgtagtgtaactgtgtaacagtgtagtgtaacagtgtagtgtaacagtgtagtgtaacagtgtagcagtgtagtgtaattgtgtaacagtgtagtgtaacagtgtaacagtgtagcgt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU256812 True 222 lncRNA 0.40 2 25395622 25395883

Neighbor

gene id symbol gene type direction distance location
trnai-uau_8 NA coding upstream 40030 25355500 ~ 25355592 (+)
trnai-uau_7 NA coding upstream 40754 25354776 ~ 25354868 (+)
c13h17orf75 c2h17orf75,cunh17orf75,zgc:153240,LOC107729180,LOC107590573,LOC107690268,LOC107567861 coding upstream 117255 25268864 ~ 25278367 (+)
xylt1 xylt1,LOC107590574,LOC107729195,LOC107686990,LOC107567884,LOC107733871,LOC107690267 coding upstream 174349 25155536 ~ 25221273 (+)
rab40c rab40c,LOC103366693,LOC107690266,LOC107567894,LOC107685905,LOC107590575 coding upstream 342464 25035924 ~ 25053158 (+)
prdm1b LOC108260590 coding downstream 145848 25541731 ~ 25554972 (+)
LOC113523795 NA coding downstream 174428 25570311 ~ 25614308 (+)
crybg2 LOC108255824 coding downstream 220540 25616423 ~ 25626609 (+)
zgc:101785 NA coding downstream 233478 25629361 ~ 25641443 (+)
sgo1 LOC108258632 coding downstream 280039 25675922 ~ 25683612 (+)
G216672 NA non-coding upstream 128512 25262056 ~ 25267110 (+)
G216686 NA non-coding upstream 165150 25230204 ~ 25230472 (+)
G216675 NA non-coding upstream 206579 25166500 ~ 25189043 (+)
G216674 NA non-coding upstream 210220 25157680 ~ 25185402 (+)
G216668 NA non-coding upstream 238079 25156261 ~ 25157543 (+)
G217035 cacna1i,LOC108276491,LOC102291313,LOC103368285 non-coding downstream 400421 25796304 ~ 25890447 (+)
G217082 NA non-coding downstream 504191 25900074 ~ 25901489 (+)
G217175 NA non-coding downstream 671865 26067748 ~ 26072680 (+)
LOC113523785 NA non-coding downstream 684271 26080154 ~ 26086876 (+)
G217170 NA non-coding downstream 744694 26140577 ~ 26146174 (+)
G216515 grin2a,LOC107568390,LOC107685916,LOC107690256,LOC108413991 other upstream 597944 24797254 ~ 24797678 (+)
si:ch211-157c3.4 LOC108278842 other upstream 856505 24529679 ~ 24539117 (+)
G216197 NA other upstream 937618 24457070 ~ 24458004 (+)
rbfox1 rbfox1,LOC107733849 other upstream 1065622 24038908 ~ 24330000 (+)
fbxl16 fbxl16,LOC107738613,LOC107685932,LOC107568127,LOC107733860,LOC107568165,LOC107690242 other upstream 1475219 23894247 ~ 23920403 (+)
LOC113523791 nacc1,LOC103025552,LOC107577049 other downstream 861488 26257371 ~ 26301906 (+)
ier2a LOC108261286 other downstream 909563 26305446 ~ 26306768 (+)

Expression


Co-expression Network