G217082


Basic Information

Item Value
gene id G217082
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 25900074 ~ 25901489 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU257115
AGATGTTAGAGATGTTATAGAGGTTATAGAGgttatagatgttatagaggttatagatgttatagaggtTATAGGAGTTAGAGAGATTATAGAGGTTATAGATGTTAGAGATGTTATAGAGGTTATAGATGTTATAGATGTTAGAGATGTTATAGAGGTTATAGATGTTAGAGATgttatagatgttatagaggtTATAGATGTTAGAGATGTTATAGAGGTTATAGAGGTTATAGATGTTAGAGATGTTAGAGATGTTATAGGAGTTAGAGAGATTATAGAGGTTATTGAGGTTATGGATTATTAACACTGTTCAGCTCTCAGTAATAAGCTCAGTTTAACTCACGGCTTCTCTGTAATTCACTTCTGAGAATATTTGGGAGCGTTGATCGACAGACTGAAAGATTGAAACCTCTATTAAAGATGTAGATAAAAATGTTAAGAGTTTTAAACACAAGCCACGTAATCTGATTAACTCTAAAACCTGCTAATCTTCATCTTCAGTTCCGCCAAAGTACCGCAGCCACTCCCTCTCCCTTCCTCTGCTTCAGTGCAGAATTTGCAGAAGATGATTATTATCAAAGAATCTTTAACTAGtgaaaaaggtgtgaaaatcctcacatacatcacatcatGACGGTGGAGc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU257115 True 646 lncRNA 0.35 2 25900074 25901489

Neighbor

gene id symbol gene type direction distance location
LOC113523761 leg,LOC108276513 coding upstream 182935 25711195 ~ 25717139 (+)
LOC113523775 NA coding upstream 189970 25706864 ~ 25710104 (+)
LOC113523776 LOC108276501 coding upstream 195137 25696382 ~ 25704937 (+)
sgo1 LOC108258632 coding upstream 216462 25675922 ~ 25683612 (+)
zgc:101785 NA coding upstream 258631 25629361 ~ 25641443 (+)
LOC113523792 grap2 coding downstream 9193 25910682 ~ 25922856 (+)
LOC113523801 LOC108276446 coding downstream 29942 25931431 ~ 25938225 (+)
rac2 rac2,LOC108276437,LOC107561353,LOC108436672,LOC107551172 coding downstream 55277 25956766 ~ 25972966 (+)
LOC113523768 LOC108276424,LOC108436653 coding downstream 85303 25986792 ~ 26007697 (+)
LOC113523788 LOC108276419 coding downstream 126809 26028298 ~ 26032262 (+)
G217035 cacna1i,LOC108276491,LOC102291313,LOC103368285 non-coding upstream 9627 25796304 ~ 25890447 (+)
G216817 NA non-coding upstream 504191 25395622 ~ 25395883 (+)
G216672 NA non-coding upstream 632964 25262056 ~ 25267110 (+)
G216686 NA non-coding upstream 669602 25230204 ~ 25230472 (+)
G216675 NA non-coding upstream 711031 25166500 ~ 25189043 (+)
G217175 NA non-coding downstream 166259 26067748 ~ 26072680 (+)
LOC113523785 NA non-coding downstream 178665 26080154 ~ 26086876 (+)
G217170 NA non-coding downstream 239088 26140577 ~ 26146174 (+)
G217193 NA non-coding downstream 297776 26199265 ~ 26205038 (+)
G217211 NA non-coding downstream 342220 26243709 ~ 26247946 (+)
G216515 grin2a,LOC107568390,LOC107685916,LOC107690256,LOC108413991 other upstream 1102396 24797254 ~ 24797678 (+)
si:ch211-157c3.4 LOC108278842 other upstream 1360957 24529679 ~ 24539117 (+)
G216197 NA other upstream 1442070 24457070 ~ 24458004 (+)
rbfox1 rbfox1,LOC107733849 other upstream 1570074 24038908 ~ 24330000 (+)
fbxl16 fbxl16,LOC107738613,LOC107685932,LOC107568127,LOC107733860,LOC107568165,LOC107690242 other upstream 1979671 23894247 ~ 23920403 (+)
LOC113523791 nacc1,LOC103025552,LOC107577049 other downstream 355882 26257371 ~ 26301906 (+)
ier2a LOC108261286 other downstream 403957 26305446 ~ 26306768 (+)

Expression


Co-expression Network