XLOC_005354


Basic Information

Item Value
gene id XLOC_005354
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 24280847 ~ 24302015 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00010807
GCAAAATGAATGGGACGTAGTTCGTGTAATATTTATAACTGGAGTTACTTAAATGTGCTTTATTGATTTTTCGTTTGCATGCCAGGGAACAACAGAAATGCATACCGATCATCGGAAAGTTGCAGAGCCTCGCCTGCAGATTACTAATGCATTCGTCTGGGGAGGCAAAGCGGTCGTCAATACGTTGGAGTCGACGGCAGCCTTGAGCGAGAAGAATCTCAAACGGGAAGGGATAGAGGAGCAATTTCTAGGCAAATAAGGTTGCGGGAGATTGATGGTCAGATATTTTCAGAAAATGTTCAGCGGGATTTGTCTCTTGAGTGGATCGACGCTGAATTTCCCGCTGACACGAAGCGGAAATGCATGTTTATCTCTTAGCATCTCTTAGAGCTGGGtaataaaatgataatgataAGTAGCACAGTATAATTTTAACAAAACTTAATTAAGCGTTGATGATTTTCAATATAAAGTTTATGCTGTACAATGGAACTAAATGGTAATGCTCATTGGTGCGACATTGACTGTTGATCCATTTGAATTGCGGCAAAATTTTATTGTAGCTAAAGGAGTGCTCTAcactttttttctggaaaaagacCCATTTTGCAAGTCACCTAGAATCACTTTTCTTGAATCCATTCAGTCAATTTCTGGGTCTGAAGCgttttaagcttagcttagcatcaagAATTGGAtcaaaacagtggttctcaaactgtggtacgagTGCCagtagtggtacgcgggcttccttctattggtatgcggaggaatgaaatgtcatgtacatgctacatatatttctaaactttaaaaaataatgtgtataatatgccatatatgacataaagcctatattcctgaggtaatctgccacgttttttttaactgtgcacagttgtagctgctttacggGACCTACTACccaactgtatttcaatactgcttttggtggtacttggagagacattttttttttctaaggtgaTACTTGATGAAaagagtttgagaaccactggattagaccattaaaacctcactcaaaaatatatatatataaaaaaaagagtttagatAAATCCATACTAAAAACTTGTAGTGCACCATGTGTACCTACAGAAACAAAAAAGTgcaattctgtttttattttctacCACTCATTTCGCCATAATATTATATGCAtgatatcattgtgcctgctacaGCCATGGTAAGGCAGCAAAATTCCTTGAATATTAGGTTGGAATGAGAGCATAGTTCCTAAACAAATctacctagaaaatagcaacgtttcattttctgttggtcATAGTACACAATATAATTACAGAAGAGtctagtttaaaaaataataataataataattctaaactCTTTTTGAAATTTTTGAGTGAGAAAATAACAGtataatctgattaaattatttatgctgtcaaaaatgtaaaatgagcCAATTTCCAAAATACTGGAAAGTTCCTTTAAGCTTGAGAATTTGTGAATATACATATTGTACAGCGGGGAAGAtaaatattgaacacatcaccTTTACCGTTCTGATGTTggtaacaagcaaaaaaataaataaaaatcatacatGCAAAGAGAACAATTAGTATAAATaactagtttacaaattaagttatgtattataaaatgaaatgacaaagtgaaaaagtattgaacacataaagaagtGTAGAAAGTcattgaaagcccagacagcagctgaaatttctcagtagttcttcagcaaccctctgcccttcctcagtatacataaataaatattagctgcttcagtccaacatctacattaccaagATGATTAAACCtgagtggacattttagcaatacaatgatcaaaaacacagccaaggaaagtcttaaatgctttcagataAAGAAAATAGAGCAGtaaaatggcccagccaatcacctgacttaaatctattataaaatacaaattaaagatcagatttgatacaCGAGACCaccagaaccatcaagattttacactgttgaagtcaaacTCAATTTTACAGAAGTCAAACTGTAAAACTCCCACCTGAGcttttcatgtgacttcattcttcattagagaggcgtctttaagctgtcattacaagccttttatataaagtattaaaaacatttcagtagttcagtactttcctCTTGAGTCATTTCATGAttacacatacacatttttttttttgtttgtttgttttatttttatgtttgtattgtttggatttttaccaaaatctggttcaattccatgtcaacagctcctttagaaataataCTCCCAGGAAAAAACCCgacatgtttaatacttattttccctgctgtatataaAGTTTACCTAATGTACTCAGGCTAGTGGTTTCATACAATTATCAAAGAAAATAAACCAATAtctgtaataaaatattttgttaaggcaaaatacttatttaaagaaTAATATTCTATTTTATCTTTAGGAATACTGCACCCAAGATTTGTGACATTTGGTTGACATGTTTGTCATGGTCTATCAAGTATAATTAACTGTCTAGTTTCTACCACTTTTGTATTGaacatctaaaaaataaataaatataaaaacaaaaatataatttaaaaaaatctgttattgatTTGAAGCAATACAAATGTGACACGTATCATAATGATTATAGATTCTGAtttgtataaaattaattattacaattatttatttttttgccatgtCATCCAGCCCCTTAGTACAGTATCATCTCATTCATAATGGACTATGAAACTTTCAACATTTGTTCACACACACTTCAGGTTTGTTTAATAGAGAAAAGAAAGGTTTGTAAAAAGCCATTCTCAAGTGCATGGGGAAAAGGTTAAAACCGTAATATGCTTTTAATGAGCTCCatcttatatataatatttcatcATTTTCATTGCCAATACAACATGTAGTTCACGCACCAGTCGATCCGAAAAAAGCTGTTTGGTTTTAATGGCCTTTTCCATCACACTACAACCTGAGCTGCCATCTCTTGAAGGCAGGCGTAAAACTCACTGGTCTTTTGATTATCACTTAACCATTTAACATGTACATTTGTAATAATTATAGATGGTGGAAACAGCTCTCAGACGGCAAAAAGGGAGATGTATTTTGGAAAATGTGCTCTCTCACTACAAATGTGTGTAGATGCAGAGCACAAAATAGATTTACGCATTCACATCTGTTTGAGCtcaacagaataaaaacacaTTCCGCATAATGCCCACTGATTATTTCCCCCCCTCCTGATATTGTTCTGAAAGGATTGAATCTTAAAGTGAAAAGAGGAAACCAAACTATTAAGGGAGAGGATTCAGAGAAGAAGAAAACATGCTCCTGCTGATTTTGGTGTTTATTTGCATGTATGTTTCTTTAAGGCTGTGTGTACACCAGAGTCTGtt

Function

GO:

id name namespace
GO:0044085 cellular component biogenesis biological_process
GO:0048732 gland development biological_process
GO:0001708 cell fate specification biological_process
GO:0016070 RNA metabolic process biological_process
GO:0016072 rRNA metabolic process biological_process
GO:0022613 ribonucleoprotein complex biogenesis biological_process
GO:0071840 cellular component organization or biogenesis biological_process
GO:0007517 muscle organ development biological_process
GO:0034470 ncRNA processing biological_process
GO:0006364 rRNA processing biological_process
GO:0090304 nucleic acid metabolic process biological_process
GO:0006396 RNA processing biological_process
GO:0030490 maturation of SSU-rRNA biological_process
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:1901861 regulation of muscle tissue development biological_process
GO:0006725 cellular aromatic compound metabolic process biological_process
GO:0016202 regulation of striated muscle tissue development biological_process
GO:1901360 organic cyclic compound metabolic process biological_process
GO:0010467 gene expression biological_process
GO:0044238 primary metabolic process biological_process
GO:0042254 ribosome biogenesis biological_process
GO:0000462 maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) biological_process
GO:0000463 maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) biological_process
GO:0060485 mesenchyme development biological_process
GO:0000469 cleavage involved in rRNA processing biological_process
GO:0000470 maturation of LSU-rRNA biological_process
GO:0042273 ribosomal large subunit biogenesis biological_process
GO:0042274 ribosomal small subunit biogenesis biological_process
GO:0000478 endonucleolytic cleavage involved in rRNA processing biological_process
GO:0000479 endonucleolytic cleavage of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) biological_process
GO:0048634 regulation of muscle organ development biological_process
GO:0048641 regulation of skeletal muscle tissue development biological_process
GO:0043170 macromolecule metabolic process biological_process
GO:0006807 nitrogen compound metabolic process biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0034660 ncRNA metabolic process biological_process
GO:0046483 heterocycle metabolic process biological_process
GO:0090501 RNA phosphodiester bond hydrolysis biological_process
GO:0090502 RNA phosphodiester bond hydrolysis, endonucleolytic biological_process
GO:0030684 preribosome cellular_component
GO:0030686 90S preribosome cellular_component
GO:0030687 preribosome, large subunit precursor cellular_component
GO:0032040 small-subunit processome cellular_component
GO:0044422 obsolete organelle part cellular_component
GO:1990904 ribonucleoprotein complex cellular_component
GO:0044428 obsolete nuclear part cellular_component
GO:0070013 intracellular organelle lumen cellular_component
GO:0044446 obsolete intracellular organelle part cellular_component
GO:0044452 obsolete nucleolar part cellular_component
GO:0005634 nucleus cellular_component
GO:0031974 membrane-enclosed lumen cellular_component
GO:0031981 nuclear lumen cellular_component
GO:0043226 organelle cellular_component
GO:0043227 membrane-bounded organelle cellular_component
GO:0043228 non-membrane-bounded organelle cellular_component
GO:0043229 intracellular organelle cellular_component
GO:0043231 intracellular membrane-bounded organelle cellular_component
GO:0043232 intracellular non-membrane-bounded organelle cellular_component
GO:0043233 organelle lumen cellular_component
GO:0005730 nucleolus cellular_component
GO:0005488 binding molecular_function
GO:0034511 U3 snoRNA binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0030515 snoRNA binding molecular_function
GO:0097159 organic cyclic compound binding molecular_function
GO:1901363 heterocyclic compound binding molecular_function
GO:0003723 RNA binding molecular_function

KEGG:

id description
ko00230 Purine metabolism
ko00240 Pyrimidine metabolism
ko03020 RNA polymerase
ko03230 Viral genome structure
ko05164 Influenza A
ko05016 Huntington disease
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00010807 True 3447 lncRNA 0.34 2 24280847 24302015

Neighbor

gene id symbol gene type direction distance location
XLOC_005353 NA coding downstream 100778 24179244 ~ 24180069 (-)
XLOC_005352 chac2 coding downstream 220489 24056000 ~ 24060358 (-)
XLOC_005351 map3k8 coding downstream 621959 23647546 ~ 23658888 (-)
XLOC_005350 NA coding downstream 860537 23415226 ~ 23420310 (-)
XLOC_005349 NA coding downstream 909002 23371173 ~ 23371845 (-)
XLOC_005355 NA coding upstream 412371 24714386 ~ 24721326 (-)
XLOC_005356 NA coding upstream 486488 24788503 ~ 24791867 (-)
XLOC_005357 foxn2b coding upstream 494502 24796517 ~ 24832297 (-)
XLOC_005358 fbxo11a coding upstream 539704 24841719 ~ 24904944 (-)
XLOC_005359 msh2 coding upstream 604091 24906106 ~ 24928497 (-)
XLOC_005344 NA non-coding downstream 1721072 22544732 ~ 22559775 (-)
XLOC_005340 NA non-coding downstream 1835746 22443640 ~ 22445101 (-)
XLOC_005367 NA non-coding upstream 1121702 25423717 ~ 25432558 (-)
XLOC_005369 NA non-coding upstream 1583644 25885659 ~ 25887891 (-)
XLOC_005374 CR854941.1 non-coding upstream 1838190 26140205 ~ 26140321 (-)

Expression


Co-expression Network