LOC113523761 (leg,LOC108276513)


Basic Information

Item Value
gene id LOC113523761
gene name leg,LOC108276513
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 25711195 ~ 25717139 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026909793.2
CACGCATCCTTCGCTCCGCCTCACAGCCCCGGCTTTAAAAAAGCTCCAAACGCACTGCGACTTTCTCCTGAAATCCTCCACTTTCATCTTTCCGCAGGCACCACAGAGAAAAGTCACCATGAGTggTGTAATAGTGCAGAACATGTCCTTTAAACCGGGACAGACCCTGACAGTAACCGGAGTCCCGAATCCTGATTCCACCAATTTTGCCATCAACATCGGGAACAGTCCTGAAGAACTCGCTCTGCACCTGAACCCTCGCTTCAGCGCTCATGGAGATAACCACACTGTGGTGTGTAACTCGTACCAGGGGGGCAGCTGGTGCCAGGAGCACAGACCAGACGGCTTTCCCTTTAATCAGGGCGAGGAGTTTAAGATATGGATCACGTTCACCCATGACGAGTTTAAGATCACTCTGCCAGACAACTCAGAGATCCACTTCCCAAACCGCCCCGGCGCCGAAAAGTACAACTACATGCTCTTCGAAGGCGGGGTGCGAATCCACAGCATCGAGATCAAGTAGAGTCGATTTCTGCGATGCCACAACACATCTGTTCACTTATTCAGCTAATCTACGCTAGCTTTCGTCTGCCTTACACGCCACTGTGGTACTATGCAACTAAACCACTTAAAAGGAACCCTGGAGAACAAACACGTTtatctcagaatgcagaatgAAATGATTAAGTTCATGTTTACAGAAAAGCTTTTTCTCGCAGTTTTAACATCATTCCAATAAAACATGCAATTTCATTTAAACTCTGTTTTGTAGCTGAAACCAAATTAAAAGTTCTTTTACATCAGCGATGATTTGCTTCCTGTTTctgtggaaataaaatgaataaaataaggACTGGACTCACA

Function

symbol description
leg Acts upstream of or within regulation of heart contraction.

GO:

id name namespace
GO:0048741 skeletal muscle fiber development biological_process
GO:0090303 positive regulation of wound healing biological_process
GO:0002040 sprouting angiogenesis biological_process
GO:0050769 positive regulation of neurogenesis biological_process
GO:0030246 carbohydrate binding molecular_function
GO:0016936 galactoside binding molecular_function
GO:0043236 laminin binding molecular_function

KEGG:

id description
K06830 LGALS1; galectin-1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026909793.2 True 864 mRNA 0.46 4 25711195 25717139

Neighbor

gene id symbol gene type direction distance location
LOC113523775 NA coding upstream 1091 25706864 ~ 25710104 (+)
LOC113523776 LOC108276501 coding upstream 6258 25696382 ~ 25704937 (+)
sgo1 LOC108258632 coding upstream 27583 25675922 ~ 25683612 (+)
zgc:101785 NA coding upstream 69752 25629361 ~ 25641443 (+)
crybg2 LOC108255824 coding upstream 84586 25616423 ~ 25626609 (+)
LOC113523792 grap2 coding downstream 193543 25910682 ~ 25922856 (+)
LOC113523801 LOC108276446 coding downstream 214292 25931431 ~ 25938225 (+)
rac2 rac2,LOC108276437,LOC107561353,LOC108436672,LOC107551172 coding downstream 239627 25956766 ~ 25972966 (+)
LOC113523768 LOC108276424,LOC108436653 coding downstream 269653 25986792 ~ 26007697 (+)
LOC113523788 LOC108276419 coding downstream 311159 26028298 ~ 26032262 (+)
G216817 NA non-coding upstream 315312 25395622 ~ 25395883 (+)
G216672 NA non-coding upstream 444085 25262056 ~ 25267110 (+)
G216686 NA non-coding upstream 480723 25230204 ~ 25230472 (+)
G216675 NA non-coding upstream 522152 25166500 ~ 25189043 (+)
G216674 NA non-coding upstream 525793 25157680 ~ 25185402 (+)
G217035 cacna1i,LOC108276491,LOC102291313,LOC103368285 non-coding downstream 79165 25796304 ~ 25890447 (+)
G217082 NA non-coding downstream 182935 25900074 ~ 25901489 (+)
G217175 NA non-coding downstream 350609 26067748 ~ 26072680 (+)
LOC113523785 NA non-coding downstream 363015 26080154 ~ 26086876 (+)
G217170 NA non-coding downstream 423438 26140577 ~ 26146174 (+)
G216515 grin2a,LOC107568390,LOC107685916,LOC107690256,LOC108413991 other upstream 913517 24797254 ~ 24797678 (+)
si:ch211-157c3.4 LOC108278842 other upstream 1172078 24529679 ~ 24539117 (+)
G216197 NA other upstream 1253191 24457070 ~ 24458004 (+)
rbfox1 rbfox1,LOC107733849 other upstream 1381195 24038908 ~ 24330000 (+)
fbxl16 fbxl16,LOC107738613,LOC107685932,LOC107568127,LOC107733860,LOC107568165,LOC107690242 other upstream 1790792 23894247 ~ 23920403 (+)
LOC113523791 nacc1,LOC103025552,LOC107577049 other downstream 540232 26257371 ~ 26301906 (+)
ier2a LOC108261286 other downstream 588307 26305446 ~ 26306768 (+)

Expression


Co-expression Network