prdm1b (LOC108260590)


Basic Information

Item Value
gene id prdm1b
gene name LOC108260590
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 25541731 ~ 25554972 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026909796.2
cacttGCATTCACATTGTCTGAGAAAAGGACAGCGTTACGGTTGAGCTGGCACTACCGTCGTCCCAATTGGATCTTCTCAGACTAATcctgagagtcacatgaccactgGGATTTCCCGATTGGATGGTCACGGACGCTCAAAAGCCTGGCACGAGTGAGATGCTGACAGTTACAGTGgcaaagaggaagaaaaaaaaaacgactagAAAGGAATTGGATTTGGGAAGTGAAGGAAAAATTGAGGATGTGTATGTGACTGAAGAAGAGAGAGGAACAAGGAATGATGTAACCAAAGAAATGAAGATTGAGCAACTGAATGAGTGTCAAttttatcacAGAAAGCTAAGAGAAGAACCTCTGCCGCCAAGAACCACAGCAGGCCGAGCGAACCAAACCCAGCCTGAGGGGGAGCGCGTGAATCAGGAAACAGAGGACGAGATGAAGCAGGAGTCGTGTCTCAGGAACATGAGCGAGTGGCGTGAGGTGGATTTCGCTCTCAGCTGCACCTACATCGTCCACGACCAGCCGTTTGAGCCTGGCTTCACCCTTCCCAGAGCCATGAGCTCCATCCCAAGCAACCTCACCTTCCACTACGGCTCTGACAACGAGGTGACAGGTGTTTTCAGTAAGGAGTACCTCCCCCAGGGCACACGCTTCGGCCCCCTGCAGGGTGAGATTTACGCCAAAGACGAGGTGCCGCCCCATGCCAACAGGAAATATTTTTGGAGGATTTACTCCGGCGGGCAGCTCCACCACTTTATTGATGGATATGACGTGCAGCGCAGCAACTGGATGCGTTTCGTCAACCCGGCGCATTCCCTGGCCGAGCAGAACCTGGTGGCCTGTCAGAATGGACGTGATGTCTTCTTCTACGCCATCAGGCCCGTGGAGCCCCGGCGCGAGCTGCTCGTGTGGTACAGTCCGGAGTTCTCGAGGAGACTGTCTGGACACGCAGAAGAGCAAACAGACAGTGTGAAGCCAAAGCACTTTGGTGGTGATGTGATTGAAGCTGACCTCCAGAAGCACTGCCTACCTCAGTGGACCTGCCATCCCAAACAGGCTTCACTCCCTTACAGCCTACACAGTCAGGAAGAGGTAACAAAGGAAGGAAAGGATGAATTTGAGGAAGCTGAGGAGAAGATTGACGTGGAGGCCATTGAGCAGGACACGCCACCCAGCACTCCAGATCAGCACTTGATGGACTCCAGTAAGAAGTTTCCCCAGGAAAGCACAAACAAATCACATCCTAAGCTTGTTTCCCAGCCGTGCCCTGACCGAGTCCTTCCACTGCATCCTCAGAGCTATTACAGCCCCAGGGAAGACTTGTCACCGTACCCTGCTCTGCCACACCCCTACCATTTTTTGCCTTCATTTGACCCTCATTATCCCCAACTCATTCTAAGCCCTTACTCCCCTTCCATCCCTGCTATTCCACCCCCCAGAGGACCATTCCACTACAGCAATGTGCTGGCAAGTGACGCCTTGCCCTTTTCAGCCATGACTCCACCAGGCCCACTCCCTGTTAATCTTCCTTATCCTGCCCTACATCCTCGTACCAGCCTGGAAGCGCGGTCTGCGAATACATCACCTCCCCAGGGTGCCCCGGCCACCCCGGAGCTCTCCCCTCTCATGAATCACTCCTCAGGGTCTGAGGAAGCCATCAACCTCAGCTTGGCTGCTACACCAAAGATGAGCtctatgacatcatcatcatcatcatcatcatcatcatcatattcgGTGTCACCGCAAGGTCCAGGGTACAAGTCCCTGCCGTACCCACTAAAGAAACAGAATGGAAAGATCAAGTACGAGTGCAACGTCTGCTTCAAGACCTTCGGCCAGCTGTCCAACCTGAAGgtgcacttgaGGGTCCACAATGGAGAGAGGCCATTTCAGTGTCCGTTGTGCCAGAAGAGCTTTACCCAGCTGGCACACCTACAGAAACATCATCTTGTCCACACTGGAGAGAAACCTCATGAGTGTCAGGTGTGCCAGAAACGTTTTAGCAGCACCAGCAACCTGAAGACTCACCTGCGCTTACACTCGGGAGAGAAGCCCTACCAGTGCAAAGTGTGCGGCACCAAGTTCACGCAATACATCCACCTGAAGCTGCACCGCCGCATGCACAGCTCAAGCGAGCGACCACATTGCTGCCCGTTGTGCCACCGTGGCTTCCTCCATCACTTTTCCCTCAGGCTGCACCGTCGCTCTGGATGTTGCACCACCAATTCCCTGCCTGAAAGCCCCGAGATGAAGTACACCGCTGAGATCCTCGAGCGATTTGATGTCAGCGCCGAGGCGGAAGCTCTCGCAGAGAATTCATCAGAGACCGAAGTCAGTGCCGCTCTGGAGAGGTGGCTGGACCTGGACGATCGACCCAAACCCAGCCACTTCAAAGCCTCGGACTTTGACCTGCTGAAAACCTCAGGACTGGGGCAATGGCAGGAGAGGGCCAGCGTGGTGCGCTTCGGTGGTGAAGGAAGAGTACAGTGAGGAAGAAAAGGGAAGGATGTTTAAACTCCAGTTCCAGAAGTAGTCTAAAAATCACCTATGCTTGCGTGTAGTAGTCTATGCCAAAAAAATATCCTGAGAGGATGAGAGCTAAACCAAGCCAAGCAgcaccaaaataaataaatagcatttcCAAAGACTTAATAATTGCACTTAAGCCTTCTGTTCTTTGGCAGAGAGTGAAGGCGACCAGTTACATCCTTGtacttgtgttttcttttgtttcgtTTAGTGTGTTTCTGAGctcatattaatttattactcTCAGTActatttgtgtttggttttagaaatgtgtaaaatgtcatttttgtacATGGttgtttggaattttttttgctgttgtttggaaattaataatattgatttttttctcagGACATGTTGATAATCAGGGTATGGAATTCTTaacaaaagatatcagggttttgttgtgtgaatgttttcCGAGTATACCGTTTCTCAgcaccctcactgtaacccaAGGTATAAGAAATTCTGCAAATAGTTATGCAATGTTTGATTTGCAATCATTTTAGATCTTACTTCTTTAAAGAGAAGTCAAACTtccactttattatttattatttagagaagtccttttttttgttttctgtataattcagtaattcagtcGTCCAACACTGACCTGAACTTTTGGTGTATTTTCTTGAGCACCAGATCCCCAGCAGGAACTGAAGTTATTGTTAATCTCAGGACAGATCAGGTGTAATTTATTACTATGctctttgttttaatttattaaacattagcaCTGGAAAAAGCAGGATCTCGATCCATGTGCACAGTTACTGTTACGTAGCGATGACAAGAATTTGTTTACTGATCGTCTTTGTTTTTCATGTAGGATTTTTGTACAGTTTTGTTTACTCAGCTATTTTGGATGTTGATACTTTATATGTCAGAGTTTATTTTCACTGAACTTTTGTAATG

Function

NR:

description
PREDICTED: PR domain zinc finger protein 1 isoform X1

GO: NA

KEGG:

id description
K24501 PRDM1; PR domain zinc finger protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026909796.2 True 3469 mRNA 0.48 7 25541731 25554972

Neighbor

gene id symbol gene type direction distance location
LOC113523790 epha10,LOC108273957,LOC108413484,LOC107688368,LOC107602377,LOC107654743 coding upstream 53027 25388777 ~ 25488704 (+)
trnai-uau_8 NA coding upstream 186139 25355500 ~ 25355592 (+)
trnai-uau_7 NA coding upstream 186863 25354776 ~ 25354868 (+)
c13h17orf75 c2h17orf75,cunh17orf75,zgc:153240,LOC107729180,LOC107590573,LOC107690268,LOC107567861 coding upstream 263364 25268864 ~ 25278367 (+)
xylt1 xylt1,LOC107590574,LOC107729195,LOC107686990,LOC107567884,LOC107733871,LOC107690267 coding upstream 320458 25155536 ~ 25221273 (+)
LOC113523795 NA coding downstream 15339 25570311 ~ 25614308 (+)
crybg2 LOC108255824 coding downstream 61451 25616423 ~ 25626609 (+)
zgc:101785 NA coding downstream 74389 25629361 ~ 25641443 (+)
sgo1 LOC108258632 coding downstream 120950 25675922 ~ 25683612 (+)
LOC113523776 LOC108276501 coding downstream 141410 25696382 ~ 25704937 (+)
G216817 NA non-coding upstream 145848 25395622 ~ 25395883 (+)
G216672 NA non-coding upstream 274621 25262056 ~ 25267110 (+)
G216686 NA non-coding upstream 311259 25230204 ~ 25230472 (+)
G216675 NA non-coding upstream 352688 25166500 ~ 25189043 (+)
G216674 NA non-coding upstream 356329 25157680 ~ 25185402 (+)
G217035 cacna1i,LOC108276491,LOC102291313,LOC103368285 non-coding downstream 241332 25796304 ~ 25890447 (+)
G217082 NA non-coding downstream 345102 25900074 ~ 25901489 (+)
G217175 NA non-coding downstream 512776 26067748 ~ 26072680 (+)
LOC113523785 NA non-coding downstream 525182 26080154 ~ 26086876 (+)
G217170 NA non-coding downstream 585605 26140577 ~ 26146174 (+)
G216515 grin2a,LOC107568390,LOC107685916,LOC107690256,LOC108413991 other upstream 744053 24797254 ~ 24797678 (+)
si:ch211-157c3.4 LOC108278842 other upstream 1002614 24529679 ~ 24539117 (+)
G216197 NA other upstream 1083727 24457070 ~ 24458004 (+)
rbfox1 rbfox1,LOC107733849 other upstream 1211731 24038908 ~ 24330000 (+)
fbxl16 fbxl16,LOC107738613,LOC107685932,LOC107568127,LOC107733860,LOC107568165,LOC107690242 other upstream 1621328 23894247 ~ 23920403 (+)
LOC113523791 nacc1,LOC103025552,LOC107577049 other downstream 702399 26257371 ~ 26301906 (+)
ier2a LOC108261286 other downstream 750474 26305446 ~ 26306768 (+)

Expression


Co-expression Network