zgc:101785


Basic Information

Item Value
gene id zgc:101785
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 25629361 ~ 25641443 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026909798.2
TCCGTGGTGTAGATCAGGTGACTGATGAGCTGATAAATCTGTTCATAATCTCATCTCTGACCTTCAGAAGTCAGAGTTACGGCGGTGGAAACAGCAGacaTCCTGAGCAGAACTCGGTTGAATCACAATGACGGAGACGATGTGCTGGGGCGGTCTGGGATCTCTTCGTCCTTTCCCAGTCTTCCAGCCGGAGAAGGACGTGGCTGACCTCGAGGCTGCCCTTGAACAGAAAGACGTGAGCGCTCTGGTGAGGATTCTGGCGAACCGCAGTAACGCTCAGAGACAGAGCCTCGCTCAGACGTACCTCTCTGTCACCCAGCAAgaccTCCGAGCGAGGCTGAAGAAGGTACTGAATGGAGGTTTAGAAGAGTTGATGCTCGGCATCATGATGACGCCAGAACAGTTTGAAGCTCAACGTCTCAGACGAGCCATGGAGggTCTGGGTACAGATGAAGAAACTCTTCTAGAGATCTTGTGTATGAAGTCACCAGAGCAGCTTTCTCACATTGCAGCAGAGTACAGTAAAGAATATCAGCGTGATCTGGAGAAGGACTTGCTCAGTGACACCAGCGGAGAGTTCAGTCTGCTGCTCGTAGCTTTGCTGAAGAAGAAGCACGTGGCCGGTCAGGTGGACCAGGATGTTCGAGTTCTGTGTGAAGAACTCAACAACAATAAGGCAGATGTGGCACCATGGATCCAAATCCTGACCATGAGAGATCCAGACCATCTCAAAAGCGTGCTGATTCATGTGGAAGCTGAAAGAGGCCAGCCTGTTACTGCAGATATAGAGAAACGCTTTGGCGGAATCTTCTCCAGAGATGTCAGACTGGGCTTACAGATCCTAGTGCGCTCCATCGAGGATCCACATCGCTACTTGGCCCAGAGAATCCAGACTATGAAAGGGCCGGTGATGCAAGGACTAATAGTGTCTCACAGCGAGGAGGATCTGCTGGCTGTTAGAGCAGTATACAAGAAGGAAACGGGAAGATCTCTTTACACCACCAtacagGATAAGTTCAAGGGGGACATCCAGCAGGTTTTGCTAGCAATATGTCGTTCTGAAGACTAAGAAGGCTACAAGAGTTAGCATATATCTTAATAATATACTTGTCATGTGAACAAAAGGAATAAAGTTTAAAAGCTGTGAACCCTTCA
>XM_026909800.2
TATAACTGTGGACCAGGATGTTTGAacaTCCTGAGCAGAACTCGGTTGAATCACAATGACGGAGACGATGTGCTGGGGCGGTCTGGGATCTCTTCGTCCTTTCCCAGTCTTCCAGCCGGAGAAGGACGTGGCTGACCTCGAGGCTGCCCTTGAACAGAAAGACGTGAGCGCTCTGGTGAGGATTCTGGCGAACCGCAGTAACGCTCAGAGACAGAGCCTCGCTCAGACGTACCTCTCTGTCACCCAGCAAgaccTCCGAGCGAGGCTGAAGAAGGTACTGAATGGAGGTTTAGAAGAGTTGATGCTCGGCATCATGATGACGCCAGAACAGTTTGAAGCTCAACGTCTCAGACGAGCCATGGAGggTCTGGGTACAGATGAAGAAACTCTTCTAGAGATCTTGTGTATGAAGTCACCAGAGCAGCTTTCTCACATTGCAGCAGAGTACAGTAAAGAATATCAGCGTGATCTGGAGAAGGACTTGCTCAGTGACACCAGCGGAGAGTTCAGTCTGCTGCTCGTAGCTTTGCTGAAGAAGAAGCACGTGGCCGGTCAGGTGGACCAGGATGTTCGAGTTCTGTGTGAAGAACTCAACAACAATAAGGCAGATGTGGCACCATGGATCCAAATCCTGACCATGAGAGATCCAGACCATCTCAAAAGCGTGCTGATTCATGTGGAAGCTGAAAGAGGCCAGCCTGTTACTGCAGATATAGAGAAACGCTTTGGCGGAATCTTCTCCAGAGATGTCAGACTGGGCTTACAGATCCTAGTGCGCTCCATCGAGGATCCACATCGCTACTTGGCCCAGAGAATCCAGACTATGAAAGGGCCGGTGATGCAAGGACTAATAGTGTCTCACAGCGAGGAGGATCTGCTGGCTGTTAGAGCAGTATACAAGAAGGAAACGGGAAGATCTCTTTACACCACCAtacagGATAAGTTCAAGGGGGACATCCAGCAGGTTTTGCTAGCAATATGTCGTTCTGAAGACTAAGAAGGCTACAAGAGTTAGCATATATCTTAATAATATACTTGTCATGTGAACAAAAGGAATAAAGTTTAAAAGCTGTGAACCCTTCA

Function

NR:

description
annexin A2-like isoform X1

GO:

id name namespace
GO:0043167 ion binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026909798.2 True 1155 mRNA 0.49 13 25629361 25641443
XM_026909800.2 False 1083 mRNA 0.49 13 25629544 25641443

Neighbor

gene id symbol gene type direction distance location
crybg2 LOC108255824 coding upstream 2752 25616423 ~ 25626609 (+)
LOC113523795 NA coding upstream 15053 25570311 ~ 25614308 (+)
prdm1b LOC108260590 coding upstream 74389 25541731 ~ 25554972 (+)
LOC113523790 epha10,LOC108273957,LOC108413484,LOC107688368,LOC107602377,LOC107654743 coding upstream 140657 25388777 ~ 25488704 (+)
trnai-uau_8 NA coding upstream 273769 25355500 ~ 25355592 (+)
sgo1 LOC108258632 coding downstream 34479 25675922 ~ 25683612 (+)
LOC113523776 LOC108276501 coding downstream 54939 25696382 ~ 25704937 (+)
LOC113523775 NA coding downstream 65421 25706864 ~ 25710104 (+)
LOC113523761 leg,LOC108276513 coding downstream 69752 25711195 ~ 25717139 (+)
LOC113523792 grap2 coding downstream 269239 25910682 ~ 25922856 (+)
G216817 NA non-coding upstream 233478 25395622 ~ 25395883 (+)
G216672 NA non-coding upstream 362251 25262056 ~ 25267110 (+)
G216686 NA non-coding upstream 398889 25230204 ~ 25230472 (+)
G216675 NA non-coding upstream 440318 25166500 ~ 25189043 (+)
G216674 NA non-coding upstream 443959 25157680 ~ 25185402 (+)
G217035 cacna1i,LOC108276491,LOC102291313,LOC103368285 non-coding downstream 154861 25796304 ~ 25890447 (+)
G217082 NA non-coding downstream 258631 25900074 ~ 25901489 (+)
G217175 NA non-coding downstream 426305 26067748 ~ 26072680 (+)
LOC113523785 NA non-coding downstream 438711 26080154 ~ 26086876 (+)
G217170 NA non-coding downstream 499134 26140577 ~ 26146174 (+)
G216515 grin2a,LOC107568390,LOC107685916,LOC107690256,LOC108413991 other upstream 831683 24797254 ~ 24797678 (+)
si:ch211-157c3.4 LOC108278842 other upstream 1090244 24529679 ~ 24539117 (+)
G216197 NA other upstream 1171357 24457070 ~ 24458004 (+)
rbfox1 rbfox1,LOC107733849 other upstream 1299361 24038908 ~ 24330000 (+)
fbxl16 fbxl16,LOC107738613,LOC107685932,LOC107568127,LOC107733860,LOC107568165,LOC107690242 other upstream 1708958 23894247 ~ 23920403 (+)
LOC113523791 nacc1,LOC103025552,LOC107577049 other downstream 615928 26257371 ~ 26301906 (+)
ier2a LOC108261286 other downstream 664003 26305446 ~ 26306768 (+)

Expression


Co-expression Network