LOC113523790 (epha10,LOC108273957,LOC108413484,LOC107688368,LOC107602377,LOC107654743)


Basic Information

Item Value
gene id LOC113523790
gene name epha10,LOC108273957,LOC108413484,LOC107688368,LOC107602377,LOC107654743
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 25388777 ~ 25488704 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026909848.2
TGTCACTACAAACCCGGACGGCTGGCtctctcctgctgctgctgcgccagtgtgtgtgtgtgtgagagagagagagagtgtgtgagtgtgtgtgagtgagtgtgtgtgtgtgtgttatgagtgtgtgagtgtgtgccgGTGTGTTAGAGCGCGGGGAGCGCGCGCGGCAGCGACATGACCAGAGGCTCGCGAGCGCGTCCGGTCAATCATGGAGCTTTTTAAGGCGCTGTTTTGGATTTTACTGCTGAAGCGAgttaaagagtgtgtgtctgaggaagTGGTGTTGCTGAATTCGAAAGAATCCCAGGCAGAACTGGGCTGGACGTCTTATCCTGCAAATGGATGGGAGGAGATCAGCGGCGTGGACGAGAAGTACAAGCCGATCCGCACGTACCAGGTGTGTAACGTGATGGAGCCGAACCAGAACAACTGGCTGAGGACGGGGTGGATCGGGCGGCGTGGAGGTCAGCGCATCTTTGTGGAGCTGCAGTTCACGCTGCGTGACTGTAACAGCATTCCGGGCGTAGCGGGAAGCTGCAAGGAGACGTTCAACCTGCTGTACGCAGAGTCGGACCGGGCGCTGGGGGGCCACGACGATGACGAGGCGCGCTACAGTAAAGTGGACACCATCGCCGCTGATGAGAGCTTCACGCAGGGCGACCTGGGCGAGAGGAAGATGAAGCTGAACACGGAGGTGCGTGAGATCGGACCGCTGACGCGCCGCGGTTTTCACCTGGCCTTCCAGGACGTGGGCGCGTGCGTGGCCATCGTCTCCGTGCGCGTGTATTACAAACGCTGCCGCGCCGCCGTGCAGAACCTCGCCATCTTCCCCGACACGGTGGCTGAGGCTGCGTTCGCCACGCTGGTGGAGGTCCGGGGCGTCTGCGTCAACAACTCCGAGCCAGAAGCCACCGACTCGCCTCCCAGGATGCACTGCAGCGCTGAGGGGGAGTGGCTTGTGCCCATCGGGAGGTGCAGCTGCAGCGCCGGCTACGAGGAGGGACACAGCAGCTGTGAAGcatgtCCACCAGGCACCTATAAGATGTCGTCCCAGCAGCAGGAGTGTTTACCGTGTCCTGCTCACAGTCTGGCTGAGGACGATGGCtccgttgtgtgtgtgtgcgaagaGGGCCACTTTCGGACACTGCTGGACTCCCCGTCTGCTCCGTGCACACGACCGCCCTCTCCTCCACGAGACTTGCTCTACACCCTCAAACAGTCCACTCTCATCCTGGAATGGGCCGCTCCGGCGGACACGGGCGGTCGTGGTGACGTGAGCTACAGCGTGGCGTGTCAGCGCTGCGTCTCTGGCCCACGGGAACACTGCGAGCCGTGCGGCGCTAACGTAGGCTTCGTGCCTCAGCAGAGCGGCCTGAGCGGGCGTACGGTCACCGTGCTCAACCTGCTGCCCAACGCCAACTACACCTTCAGCGTGGAGGCCAGGAACGGCGTCTCCGAGCTGCTGCCCAACAAACACTTCTACGCCCAGGTCAACATCTCCACCAGCCTGCCAGcttcCTCGCAGGTGAGCGAGTTGCGGGTGGAGAAGATCGAGCAGCGCAGCGTGACTCTGGCCTGGAGAGAGTCAGCCAACCCCAACAACAGCCGAACAGAATACGAGATCAAATACTACGAGAAGgagCAGAAAGATCAGAGTTACTCCACCGTGAAAACCGCAGCCACCAAAATCAACGTGAACAACCTGAAACCGGGCACCACCTACGTCTTCCTCATCCGCACGTGTTCCAGCCCCGCcccttcctctctttcctcctccccctcttcctcctcttcctcatcactcctctcatcctcttcctcttcaccaccatcatcatcatcatcagcgtcatcctcctcctccgtGCCCGCAGTTCCTCCCTCTCCACCTCCGCTGGACTACGGGGCCTTCAGCACGCCGCTCGAGCTGCAGACGCTCGGAGAGTTGGCCCTGGCATCGAGTGAGCAGAGTCCGGTGGTGATCCTGGTGGTGGTGTCAGTAGCAGCTCTCATCATGCTGCTGTCACTCGGTGTGGGTCTGCTCATCTGGAGGAGACAGTGTGGCTACAGTAAAGCCAACCAGGAGGGAGACGAGGAGCTTTACTTCCAGTTCAAGATCCCGACCCGGAGGACGTACATCGACCCGGAGACGTGCGAAGACCTGCTGCAGGCTGCTCACACCTTCGCCAAAGAGCTCGACAACTCCAGCGTCAAGATCGACAGGATCGTTCACACGGGCGATTTTGGTGAGGTGTGCCGCGGCTGCCTGAAGCTGCCCAGTAAGCGCGAGCTGCCGGTGGCCATCAAGACGCTGCGGAGCGGCTGCTCGGAGAAACAGCGGCGCTCGTTCCTGTGTGAGGCGGCGATCCTGGGCCAGTTCGACCATGCCAACATCATCCGCCTCGAGGGGGTCATCACCAGAGGTAACACCATGATGATTGTGATGGAGTGTATGGCCAATGGTGCCCTGGATTCTTTTCTACGGaaacATGAAGGTCAGCTCAGCGTGCTCCAGCTGGTGGACTTGCTGAGCGCTGTGGCCTCGGGGATGAAGTACCTGACTGAGATGGGCTTCATCCACCGGCGTCTCGCAGCCCACAAAGTGCTGATCAACAGCAGCCTGGCGTGTAAAGTGTCCGGCTTCAGACCCTTACAGGAGGACAAGATGGAGGCCGTTTACACCACACTgcatggTGGGAAGAGTGTGGTGTTGTGGACGGCCCCTGAGGCGATCCAGTATCACAGATACAGCTCCGCCTCCGACGTCTGGAGCTTCGGCATCGTCATGTGGGAGGTGATGTCGTTCGGCGAAAGGCCTTACTGGGACATGGGCAGCCAAGACgtgaTCAAAGCGATCGAGGACGGTTTCCGGTTGCCAGCTCCTCTGAACTGTCCCACGTCTCTGCACCAGTTGATGTTGGACTGCTGGCAGAAGGACAGGACGGAGAGGCCGAGCTTCACTCAGATCCACAGCGCTCTCAGCAAAACCATGCGCAGCCCAGACAACATCGGCTCGTCCACGTTAACACACAGGACACTAGCCTCGTCCTCCATCTCCCTGGCCGAGAGAACCCTGGCCGAGAGGACGCTGGCCGAGAGGACGCTGGCGGAGAGGACGCTGGCGGAGAGGACACTGGCGGAGAGGACACTGGCGGAGAGGACCCTTCCATCATTCCCCTCATTCAGTTCTGTAGGCGAGTGGCTCGAGGCTGTGGATATGGGTCGCTACAAAGACAACTTCACTGCCGCAGGGTACTGCTACCTGGAGTCCGTCGCCCGCATGAACGTCCAagACGTCCTCAGTCTAGGTATCACCTCTCTGGAGCATCAGAAGCAGCTGCTGTCGGCTATTCAGACTCTCAGAGCACAAGTCATCCAGATGCATGGCCGTGGAGTGcaggtttaacacacacacacacacacacacacacacacacacacacacacacacacaaacacacagtccaGAGACACCAGTGGACCCTCCGTCCCCAGCAGGACGTCCACCAGTAAACGAGGAGGAAGGAACACAggatggtcatgtgacctaaaaCTCCACCATGATGACGCcactcttcctttctttcatgGAACGTTCATCCTTCACAGTTCTGTTCAGAGACGGTGGTTCTGTCCCCCGCAGACTAACGGAATGGTTTGGTCCGTTCTCATCCCAAACTGATGTCAGATACACGCAATTCCACTGACCTGGGAACAGCAGCGTAACGTAACGCTCACTCTGTTTCACTTCAGGTCCTTCTGACTCTTTACTGACCTGAGAACAGCATCATGTGCTAACGCTAACGCTAACACTAACGTAGCCACTGCTCTTCCTCTACAGCGGAGAAGCTCGTAAtcttcaggaataaaaaaaaatcagacaaatgagaaaatgagacgATCTAAAATCCTGAATCGCGTTTTCTCATGTTCTGTGCGTGAACTTTATTTATGTGTCCTTCCACCTCCCGCTTCCTCTCCATCTTAATCCTAATTTCTTTGCTATTgtgttattttctattattattattattattattattattattatttattaattaataataataataataataataataatttctgtatCCTCACTTTAAGAGATGTTTGCACTGTAAAATTAATCATCGACTCCCATATGGTGCAATtcgtatttattatttaatgttgatttatttatgtattta

Function

symbol description
epha10 Enables transmembrane-ephrin receptor activity. Predicted to be involved in axon guidance; positive regulation of kinase activity; and transmembrane receptor protein tyrosine kinase signaling pathway. Predicted to be located in plasma membrane. Predicted to be part of receptor complex. Predicted to be active in neuron projection. Predicted to be integral component of plasma membrane.

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026909848.2 True 4193 mRNA 0.56 18 25388777 25488704

Neighbor

gene id symbol gene type direction distance location
trnai-uau_8 NA coding upstream 33185 25355500 ~ 25355592 (+)
trnai-uau_7 NA coding upstream 33909 25354776 ~ 25354868 (+)
c13h17orf75 c2h17orf75,cunh17orf75,zgc:153240,LOC107729180,LOC107590573,LOC107690268,LOC107567861 coding upstream 110410 25268864 ~ 25278367 (+)
xylt1 xylt1,LOC107590574,LOC107729195,LOC107686990,LOC107567884,LOC107733871,LOC107690267 coding upstream 167504 25155536 ~ 25221273 (+)
rab40c rab40c,LOC103366693,LOC107690266,LOC107567894,LOC107685905,LOC107590575 coding upstream 335619 25035924 ~ 25053158 (+)
prdm1b LOC108260590 coding downstream 53027 25541731 ~ 25554972 (+)
LOC113523795 NA coding downstream 81607 25570311 ~ 25614308 (+)
crybg2 LOC108255824 coding downstream 127719 25616423 ~ 25626609 (+)
zgc:101785 NA coding downstream 140657 25629361 ~ 25641443 (+)
sgo1 LOC108258632 coding downstream 187218 25675922 ~ 25683612 (+)
G216672 NA non-coding upstream 121667 25262056 ~ 25267110 (+)
G216686 NA non-coding upstream 158305 25230204 ~ 25230472 (+)
G216675 NA non-coding upstream 199734 25166500 ~ 25189043 (+)
G216674 NA non-coding upstream 203375 25157680 ~ 25185402 (+)
G216668 NA non-coding upstream 231234 25156261 ~ 25157543 (+)
G217035 cacna1i,LOC108276491,LOC102291313,LOC103368285 non-coding downstream 307600 25796304 ~ 25890447 (+)
G217082 NA non-coding downstream 411370 25900074 ~ 25901489 (+)
G217175 NA non-coding downstream 579044 26067748 ~ 26072680 (+)
LOC113523785 NA non-coding downstream 591450 26080154 ~ 26086876 (+)
G217170 NA non-coding downstream 651873 26140577 ~ 26146174 (+)
G216515 grin2a,LOC107568390,LOC107685916,LOC107690256,LOC108413991 other upstream 591099 24797254 ~ 24797678 (+)
si:ch211-157c3.4 LOC108278842 other upstream 849660 24529679 ~ 24539117 (+)
G216197 NA other upstream 930773 24457070 ~ 24458004 (+)
rbfox1 rbfox1,LOC107733849 other upstream 1058777 24038908 ~ 24330000 (+)
fbxl16 fbxl16,LOC107738613,LOC107685932,LOC107568127,LOC107733860,LOC107568165,LOC107690242 other upstream 1468374 23894247 ~ 23920403 (+)
LOC113523791 nacc1,LOC103025552,LOC107577049 other downstream 768667 26257371 ~ 26301906 (+)
ier2a LOC108261286 other downstream 816742 26305446 ~ 26306768 (+)

Expression


Co-expression Network