LOC113523792 (grap2)



Basic Information


Item Value
gene id LOC113523792
gene name grap2
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information


Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 25910682 ~ 25922856 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence


>XM_026909857.2
CTGATGCGCGCTCCCGCACCTCGCAGTTGTTCGCGTCTCAGGCGCGCGCGGGCGGAGAGTGGCACAGCAGGGTGGATTAATAATGTTCTGTAGGATCCACTGACTCCAGATCACTTCATCACCAGAACAAGTATCTTCCCTCGCTCCCTCGTCCCCTTGCTCCCTTGTTCCCTCCCTCCCTCGTCCCCTCGCTTTGTGGCCATGGAGGCTCGAGGAAAATTTGATTTCAACGCCACGGCGGAGGACGAGCTCAGCTTTCGCAAAGGAGACACCCTGAAGATCCTCAGCACTCAGGATGACTGGTTCAAAGCAGAAATGCACGGACACGAAGGATTCGTCCCTAAAAACTACGTGGACAGACAGATACCCAGCTGGTTCCAGGAGAACGCCAGCCGCGGCGCTGCAGAGGAAATTCTCATGTCCCGGGAGGTCGGAGGCTTCCTGATCCGCGGCAGTCAGAGCTCACCTGGAGATTTCTCCATCTCCGTCAGACACGAGTTTGACGTGCAACATTTTAAGGTGATGAAGGACAATAGAGGTCATTATTACCTGTGGAGCGAGAAGTTCACGTCCCTCAACAAGCTGGTGGACTTTTACAGAACATCATCCATCTCCAAACAGAGGGAGATCTTCCTGAGAGACGGGAGCCGAGATGAACTGAGAGACCCGGCACCTCATccggtaAAGAGAAACAATCTGGACGAGCGACCCCAACCTTCTGCTTCAGCACCCCGCAGACCAACAGAGCAAACTCACACTCAGCagAATAAGCGAGGAAGTTTGGAGGAGAGAGCTCACCCCATGGGTCCTGCAGGCAGGAACAGTCCTGTTAGTACTCTTCCAACATCCAGACGCGCTTCTGAAGTCATACCTGcaccgAGGCCGGCTGTACAGGTGAAGGCTCTGTACGACTTCATGGCAGAGGAAGACGACGAGTTGGGCTTCAACACCGGTGACATCATTGAGGTTCTGGATCGTTCCGATGCGTCGTGGTGGAGAGGACGCCTGCGCGGGAACGTCGGACTTTTCCCTGCTAACTACACGGCTCAGATATAAACCACCCGGAGAACCGGTTCTTCTGCGGTGCTTTTCACTTCAAGTCGGATCTTTTCCTTTCATCACTGATTACGAGGACGAGGACAGGATAATGACGTTAATTGTCATTAATTGGATTAATTGGATTAATTACAGAATTATGATTAGTGTGAGGTACGATTCCGTCTCAGTCGAGACCCGACACACGGACGGGAATGCATTCCTATTCCTGCTTTTCCACTGAGTAATGTACATCGCTGTTCCTCAATCCTGCTCCTGATTAAATGCtgagtttatatttaatattcagtttatTATAACTGACATCAGAGCCGTGATTAATCCTTTTCATCAGGCAGCCTATAAAACACAACTTTTTCCCCTGAAGCTTGtaaaacagattattttttaattttctccccctttt
>XM_026909858.2
CGCGCGCCGTATTTGGAACACAAGCGCGTGCTGGCTGATGCGCGCTCCCGCACCTCGCAGTTGTTCGCGTCTCAGGCGCGCGCGGGCGGAGAGTGGCACAGCAGGATCTTCCCTCGCTCCCTCGTCCCCTTGCTCCCTTGTTCCCTCCCTCCCTCGTCCCCTCGCTTTGTGGCCATGGAGGCTCGAGGAAAATTTGATTTCAACGCCACGGCGGAGGACGAGCTCAGCTTTCGCAAAGGAGACACCCTGAAGATCCTCAGCACTCAGGATGACTGGTTCAAAGCAGAAATGCACGGACACGAAGGATTCGTCCCTAAAAACTACGTGGACAGACAGATACCCAGCTGGTTCCAGGAGAACGCCAGCCGCGGCGCTGCAGAGGAAATTCTCATGTCCCGGGAGGTCGGAGGCTTCCTGATCCGCGGCAGTCAGAGCTCACCTGGAGATTTCTCCATCTCCGTCAGACACGAGTTTGACGTGCAACATTTTAAGGTGATGAAGGACAATAGAGGTCATTATTACCTGTGGAGCGAGAAGTTCACGTCCCTCAACAAGCTGGTGGACTTTTACAGAACATCATCCATCTCCAAACAGAGGGAGATCTTCCTGAGAGACGGGAGCCGAGATGAACTGAGAGACCCGGCACCTCATccggtaAAGAGAAACAATCTGGACGAGCGACCCCAACCTTCTGCTTCAGCACCCCGCAGACCAACAGAGCAAACTCACACTCAGCagAATAAGCGAGGAAGTTTGGAGGAGAGAGCTCACCCCATGGGTCCTGCAGGCAGGAACAGTCCTGTTAGTACTCTTCCAACATCCAGACGCGCTTCTGAAGTCATACCTGcaccgAGGCCGGCTGTACAGGTGAAGGCTCTGTACGACTTCATGGCAGAGGAAGACGACGAGTTGGGCTTCAACACCGGTGACATCATTGAGGTTCTGGATCGTTCCGATGCGTCGTGGTGGAGAGGACGCCTGCGCGGGAACGTCGGACTTTTCCCTGCTAACTACACGGCTCAGATATAAACCACCCGGAGAACCGGTTCTTCTGCGGTGCTTTTCACTTCAAGTCGGATCTTTTCCTTTCATCACTGATTACGAGGACGAGGACAGGATAATGACGTTAATTGTCATTAATTGGATTAATTGGATTAATTACAGAATTATGATTAGTGTGAGGTACGATTCCGTCTCAGTCGAGACCCGACACACGGACGGGAATGCATTCCTATTCCTGCTTTTCCACTGAGTAATGTACATCGCTGTTCCTCAATCCTGCTCCTGATTAAATGCtgagtttatatttaatattcagtttatTATAACTGACATCAGAGCCGTGATTAATCCTTTTCATCAGGCAGCCTATAAAACACAACTTTTTCCCCTGAAGCTTGtaaaacagattattttttaattttctccccctttt

Function


symbol description
grap2 Predicted to be involved in Ras protein signal transduction and cell-cell signaling. Located in several cellular components, including cytosol; endosome; and nucleoplasm. Implicated in hepatitis C.

GO: NA

KEGG:

id description
K07366 GRAP2, GADS; GRB2-related adaptor protein 2

RNA


RNA id representative length rna type GC content exon number start site end site
XM_026909857.2 True 1462 mRNA 0.51 9 25910716 25922856
XM_026909858.2 False 1435 mRNA 0.51 8 25910682 25922856

Neighbor


gene id symbol gene type direction distance location
LOC113523761 leg,LOC108276513 coding upstream 193543 25711195 ~ 25717139 (+)
LOC113523775 NA coding upstream 200578 25706864 ~ 25710104 (+)
LOC113523776 LOC108276501 coding upstream 205745 25696382 ~ 25704937 (+)
sgo1 LOC108258632 coding upstream 227070 25675922 ~ 25683612 (+)
zgc:101785 NA coding upstream 269239 25629361 ~ 25641443 (+)
LOC113523801 LOC108276446 coding downstream 8575 25931431 ~ 25938225 (+)
rac2 rac2,LOC108276437,LOC107561353,LOC108436672,LOC107551172 coding downstream 33910 25956766 ~ 25972966 (+)
LOC113523768 LOC108276424,LOC108436653 coding downstream 63936 25986792 ~ 26007697 (+)
LOC113523788 LOC108276419 coding downstream 105442 26028298 ~ 26032262 (+)
gtpbp1 gtpbp1,LOC107737742,LOC107554141 coding downstream 164585 26087441 ~ 26118059 (+)
G217082 NA non-coding upstream 9193 25900074 ~ 25901489 (+)
G217035 cacna1i,LOC108276491,LOC102291313,LOC103368285 non-coding upstream 20235 25796304 ~ 25890447 (+)
G216817 NA non-coding upstream 514799 25395622 ~ 25395883 (+)
G216672 NA non-coding upstream 643572 25262056 ~ 25267110 (+)
G216686 NA non-coding upstream 680210 25230204 ~ 25230472 (+)
G217175 NA non-coding downstream 144892 26067748 ~ 26072680 (+)
LOC113523785 NA non-coding downstream 157298 26080154 ~ 26086876 (+)
G217170 NA non-coding downstream 217721 26140577 ~ 26146174 (+)
G217193 NA non-coding downstream 276409 26199265 ~ 26205038 (+)
G217211 NA non-coding downstream 320853 26243709 ~ 26247946 (+)
G216515 grin2a,LOC107568390,LOC107685916,LOC107690256,LOC108413991 other upstream 1113004 24797254 ~ 24797678 (+)
si:ch211-157c3.4 LOC108278842 other upstream 1371565 24529679 ~ 24539117 (+)
G216197 NA other upstream 1452678 24457070 ~ 24458004 (+)
rbfox1 rbfox1,LOC107733849 other upstream 1580682 24038908 ~ 24330000 (+)
fbxl16 fbxl16,LOC107738613,LOC107685932,LOC107568127,LOC107733860,LOC107568165,LOC107690242 other upstream 1990279 23894247 ~ 23920403 (+)
LOC113523791 nacc1,LOC103025552,LOC107577049 other downstream 334515 26257371 ~ 26301906 (+)
ier2a LOC108261286 other downstream 382590 26305446 ~ 26306768 (+)

Expression



Co-expression Network