LOC113524995


Basic Information

Item Value
gene id LOC113524995
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 555289 ~ 563409 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026911408.2
GCTTTCAGCAAGAGCAGCTGCTGAACCGCAGTGACTAAcgACATTTTCCTGGTGTCCAGCCTCCAACAGGAAAGAAAGTGTGGATACGGGGGAACTGGACATACAACAAATCCAACCATGTTGCAGGCACTTCTGATTTGGGCTGTATTTGCTGCAAATCTCCCTTCCCCAACCAGCCAGGGTTGTTTCAATGTGAGTGAGTCTCAATGTCACAATGTGGACTTTGCTCCCGGATCCAACCTGGCAGGAGAAGGCTTTGACATCACCACCATGCAACGGAAAGGGGCCTTCGCCCTCGACATGAGCTCCTGGCTCCAGAAGGACAAGTCCTGTACTCTGTGTAAAAACCCCTACATGGGAGGTCAAATGCAGAAGCTCCCGGTTTCTGTGGTGGACTGGAGACCGAGTCAGAGGTGCAGAATGAAATTGTCCAGCTCCATCTACCAGTCCAGCGAGGACCTGGTCACTGCCAGCACCTCTTCTATTGAGAACAACTGGAAAGTAGGCTTGCACATAATGACTCCAAAAGTCCAGGGATCACTGATGCTGGCAGGCAGTAACTCCAAGCTGGCTGAATATTCAATGGAGAAAACCAAAAAAGACAGGTTCAGCTTCACCAGCCATGCTGTCTCATGTGGATATTACAGTTACAGGGTTTCGAGCCGTCCACCCTTGCACCCAGAACTAATTAATGAATTCGGAAGTCTCCCTGAGATATATAATGAGTCTACAAAGTACCACTATTTCAAGATGATTGACAAGTTTGGAACTCATTATATCACAAAGGTGACTCTAGGTGGAGAGGTTCGCTCTGTGACCAGCATCAGGGAATGCCAGGCGTCCCTGCAGGGTCTGAGTGTGGATGAGGTGAAGACATGTCTGGACGTGGAGGCTTCTGTCAGTATAGGAATAGCTGCAAGCCTGAATCCCAAGGCTCAACAGTGCCAGCAGGCCACGGACAGGACTCTGAGCAAAAAGAGCTTTGCTAGCAGCTTCAGAGACAGGGAAACATATGTGATGGGTGGCTACACTCGGAGTGTCGACCTCCTTTTCTCATCAAATAATGACCCAGAGGCCTATAAGGAGTGGGTCTCATCTCTGCCCGCTCACCCTGATGTGCTTTCCTACTCGCTTGAGCCCCTTCACGAGTTGCTGCCAGAGAAAAACCCAATCCGAGAGCATTTGCTCAATGCTATCAAGGACTACATCCTACAGAGGGCTCTGTTGAAAAGCGATACAAACCCATGTAAGAACAGTGCATACTCCGAGGAACCGTGCAGCTGCCACAACAAACCGGGTGTGGCCCCCAACTGCTGCCCCACTAAGAAAGGATATGCAGAGATCACCGTAACTGTGGTTGGAGCCACGGGTTTATATGGAGATTACTTCCATAAGACAGATGCATTCGTGAAGCTTCTGTGGGAAGATGGAACCATCCATGGCCAGACGTCCGTGATCAAAGAAAACAACTCGCCCAAATGGAACCACAAGTTCCCTCTTGGAACTGTGGACCTTACTCAGGTCAGCAGTGTGAAGCTGGAGGTGTGGGATGAGGATGGTAATTTAAAATATGACCTTCTTGGGGTATGTAAAGTTCTACTGAAATCTGGAAAAAATCTGGACTGTTCCCTCAATCATGGAAGGCTGTATTATAATGTGGAAGTAAAGTGTATTGACGGATTGGCTGGTTCTTTGTGCACTGTGTACAAGCCCTTTGCCATGGAGGCACAGCTGGAGAAAACATACGTCTCCCGGAATGCTCGCCCGATTCCCAAAAGCATGCTGCTGCAGATGGGAGTGCTCCTCGATGCAAGCCTTCACAACCAGAGCAACATTTGCAAAGCTACAGGTCTTGAGTTGCTCATTTGTACTGCCTTTTGCCTTTTTGGAAGCTTACTAAAAGTATCATGAAGCAAAGTCTTGCTACAGTTATGTAGTTTGTAAATTGCATATTCATGGCAGCTACTATAATGTTTAACATAGAATATCTGCATTTAGTATTGGTGTATTATTACTATCTACTTTTAGTGCTCATTTGTGCTGCAACTGTCTTTTTTTCAAAGCCTAATAAAAGTATCATGAAGCaaaata
>XM_026911409.2
CGTGCTTTCAGCAAGAGCAGCTGCTGAACCGCAGTGACTAAcgGAACTGGACATACAACAAATCCAACCATGTTGCAGGCACTTCTGATTTGGGCTGTATTTGCTGCAAATCTCCCTTCCCCAACCAGCCAGGGTTGTTTCAATGTGAGTGAGTCTCAATGTCACAATGTGGACTTTGCTCCCGGATCCAACCTGGCAGGAGAAGGCTTTGACATCACCACCATGCAACGGAAAGGGGCCTTCGCCCTCGACATGAGCTCCTGGCTCCAGAAGGACAAGTCCTGTACTCTGTGTAAAAACCCCTACATGGGAGGTCAAATGCAGAAGCTCCCGGTTTCTGTGGTGGACTGGAGACCGAGTCAGAGGTGCAGAATGAAATTGTCCAGCTCCATCTACCAGTCCAGCGAGGACCTGGTCACTGCCAGCACCTCTTCTATTGAGAACAACTGGAAAGTAGGCTTGCACATAATGACTCCAAAAGTCCAGGGATCACTGATGCTGGCAGGCAGTAACTCCAAGCTGGCTGAATATTCAATGGAGAAAACCAAAAAAGACAGGTTCAGCTTCACCAGCCATGCTGTCTCATGTGGATATTACAGTTACAGGGTTTCGAGCCGTCCACCCTTGCACCCAGAACTAATTAATGAATTCGGAAGTCTCCCTGAGATATATAATGAGTCTACAAAGTACCACTATTTCAAGATGATTGACAAGTTTGGAACTCATTATATCACAAAGGTGACTCTAGGTGGAGAGGTTCGCTCTGTGACCAGCATCAGGGAATGCCAGGCGTCCCTGCAGGGTCTGAGTGTGGATGAGGTGAAGACATGTCTGGACGTGGAGGCTTCTGTCAGTATAGGAATAGCTGCAAGCCTGAATCCCAAGGCTCAACAGTGCCAGCAGGCCACGGACAGGACTCTGAGCAAAAAGAGCTTTGCTAGCAGCTTCAGAGACAGGGAAACATATGTGATGGGTGGCTACACTCGGAGTGTCGACCTCCTTTTCTCATCAAATAATGACCCAGAGGCCTATAAGGAGTGGGTCTCATCTCTGCCCGCTCACCCTGATGTGCTTTCCTACTCGCTTGAGCCCCTTCACGAGTTGCTGCCAGAGAAAAACCCAATCCGAGAGCATTTGCTCAATGCTATCAAGGACTACATCCTACAGAGGGCTCTGTTGAAAAGCGATACAAACCCATGTAAGAACAGTGCATACTCCGAGGAACCGTGCAGCTGCCACAACAAACCGGGTGTGGCCCCCAACTGCTGCCCCACTAAGAAAGGATATGCAGAGATCACCGTAACTGTGGTTGGAGCCACGGGTTTATATGGAGATTACTTCCATAAGACAGATGCATTCGTGAAGCTTCTGTGGGAAGATGGAACCATCCATGGCCAGACGTCCGTGATCAAAGAAAACAACTCGCCCAAATGGAACCACAAGTTCCCTCTTGGAACTGTGGACCTTACTCAGGTCAGCAGTGTGAAGCTGGAGGTGTGGGATGAGGATGGTAATTTAAAATATGACCTTCTTGGGGTATGTAAAGTTCTACTGAAATCTGGAAAAAATCTGGACTGTTCCCTCAATCATGGAAGGCTGTATTATAATGTGGAAGTAAAGTGTATTGACGGATTGGCTGGTTCTTTGTGCACTGTGTACAAGCCCTTTGCCATGGAGGCACAGCTGGAGAAAACATACGTCTCCCGGAATGCTCGCCCGATTCCCAAAAGCATGCTGCTGCAGATGGGAGTGCTCCTCGATGCAAGCCTTCACAACCAGAGCAACATTTGCAAAGCTACAGGTCTTGAGTTGCTCATTTGTACTGCCTTTTGCCTTTTTGGAAGCTTACTAAAAGTATCATGAAGCAAAGTCTTGCTACAGTTATGTAGTTTGTAAATTGCATATTCATGGCAGCTACTATAATGTTTAACATAGAATATCTGCATTTAGTATTGGTGTATTATTACTATCTACTTTTAGTGCTCATTTGTGCTGCAACTGTCTTTTTTTCAAAGCCTAATAAAAGTATCATGAAGCaaaata

Function

GO: NA

KEGG:

id description
ko04658 Th1 and Th2 cell differentiation

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026911408.2 True 2091 mRNA 0.47 6 555292 563409
XM_026911409.2 False 2043 mRNA 0.47 5 555289 563409

Neighbor

gene id symbol gene type direction distance location
pax10 LOC108280587,LOC107557340,LOC106521360,LOC107579793 coding upstream 5924 543400 ~ 549365 (+)
nosip nosip,LOC107658495,LOC107729514,LOC107583007 coding upstream 48159 496444 ~ 507130 (+)
LOC113525007 LOC108280579,LOC108427364,LOC100007086,LOC107554108 coding upstream 59720 486254 ~ 495569 (+)
trpm4a LOC108280300 coding upstream 73855 457705 ~ 481434 (+)
scaf1 scaf1,LOC107658492,LOC107583012,LOC105925210 coding upstream 118395 423846 ~ 436894 (+)
bcl2l12 NA coding downstream 9985 573394 ~ 586456 (+)
srrm2 LOC108280305,LOC107583001,LOC107689653,LOC107729482,LOC107730748 coding downstream 89628 653037 ~ 666347 (+)
si:dkey-16l2.16 si:dkey-16l2.16,LOC108280555,LOC108427354,LOC107729502,LOC107554119,LOC107658507 coding downstream 126780 690189 ~ 705453 (+)
kat8 kat8,LOC107658503,LOC107554120,LOC107582998 coding downstream 154208 717617 ~ 726285 (+)
hsd3b7 hsd3b7 coding downstream 248617 812026 ~ 849880 (+)
G203272 NA non-coding upstream 1343 553721 ~ 553946 (+)
G203141 NA non-coding upstream 23671 531387 ~ 531618 (+)
G203135 NA non-coding upstream 39401 513589 ~ 515888 (+)
G203134 NA non-coding upstream 42544 509919 ~ 512745 (+)
G203071 NA non-coding upstream 51392 445474 ~ 503897 (+)
G203277 NA non-coding downstream 23180 586589 ~ 586882 (+)
G203281 LOC108261056,LOC108428278 non-coding downstream 31769 595178 ~ 598723 (+)
G203278 NA non-coding downstream 47295 610704 ~ 612555 (+)
G203296 NA non-coding downstream 59706 623115 ~ 624620 (+)
G203303 NA non-coding downstream 67881 631290 ~ 631582 (+)
LOC117598976 NA other upstream 25665 523113 ~ 529624 (+)
LOC113525016 NA other upstream 187434 281212 ~ 367855 (+)
prl LOC108280547,LOC108427375,LOC103023606 other upstream 195935 266880 ~ 359354 (+)
G203077 NA other upstream 214013 199260 ~ 341276 (+)
unc119.2 LOC108280499,LOC107689658,LOC107730769,LOC107658437,LOC108427309 other downstream 86035 649444 ~ 652250 (+)
thoc6 thoc6,LOC107580143,LOC108280484,LOC107730738,LOC107689651,LOC106600718 other downstream 103399 666808 ~ 723692 (+)
rnf25 rnf25 other downstream 144329 707738 ~ 717019 (+)
si:dkey-16l2.17 LOC108280473 other downstream 163320 726729 ~ 732890 (+)
fus fus,LOC107658502,LOC107729526 other downstream 189658 753067 ~ 774250 (+)

Expression


Co-expression Network