srrm2 (LOC108280305,LOC107583001,LOC107689653,LOC107729482,LOC107730748)


Basic Information

Item Value
gene id srrm2
gene name LOC108280305,LOC107583001,LOC107689653,LOC107729482,LOC107730748
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 653037 ~ 666347 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026911435.2
ATATGACGTCCTCCGTGACGACACGTTTCGTTCTTTAGCCAACGTTACGCACCtcaatttttagtttttttttttttggcaaaattgTTGGCTTTGTTTGTCTTTGgtgggtttttttatttcttcagctCAGATTGTTTAGAAGTCGCTTTTTGTCAGGAGCGTGTTTTTGTTCTTTCCCTTCGCGGGGGAACAAAGAGAGCGGAGATGTATAACGGGATCGGATTGACGACGCCGCGCGGCAGCGGCACCAACGGCTACGTGCAGAGGAACCTGTCGTGCGTTCGGGCCAAGCGCAGCCGAGACGATCACGGAGGACCGAAGGacgagaaggagagagagagactggagagTCAGCTGAACCGACAACCCAACGCTGATATCCTGGAGCACCAGCGGAAGAGACAGCTGGAGGTCAAATGTGCTGAACTGCAGGACATGATGGAAGAACAAGGGTACTCCGCTGAGGAGATCGAGGAGAAGGTGAGCAGTTTCCGTATGATGCTGCAGGAGAAACAGGATCCTCCTCCACCCGCTGCTGAGAAACCAAACGTGACGGAGACGCACGCTCTCGCCGCCGCTAACCAGCAGAAGAACGACCGGCTCAGGGAGGCGTTCGGCATCGGCTCGGACTACGTGGACGGCTCGTCCTTCCACCCCGAGCGtaaagagcgagagagggagaagagagagcaggagaggctggagagagagaggatgcagCAGCAGAAATATCAAATTATTGAAGATTCTGATGAGTCGGATTCTTCATCTACTCGAAAACAGAGCCgtaagaagaaaaggaagaaagaaaaaagtagagagagctCTGAAAGTCCTTCTCCATCGCCTcgaagagagaagaaaaaaaacaagacgaagaaaaagaaaaaGGAGCGATCAGTGCAGAGTGACCGCGGGAGttCGTCTGAGGACAGGCCGGAtgtaaagaagaataaaaggaAGAGGAGCAGTGAAAACGAGACTCCGCCCCCTACGAAGAGCCGGCGGCGGCGACGCAGCGGATCGTCCAGCTCGGCTCGCAGGTCACCAGTCGCGGTGAAGGAGAAACAGCACAATCCGCCTGTCAGCCGGGCAGACGAGGGGAGGAAGGGCAGGTCTCCTGAGCGCAGGGGTCGCCACAGGGACAGTCCGGAGAAGATGGAGGTTAGAGAGAAGTCCTCGAGACATTCCAGGTCCCCTGAGCGAAACAGGAAGGACCGGGAGagggacagggagagagagagagaaaaggagcgAGTGAAGGAAAAGCCCCAAAGAGGACGCCACGATTCGTCGTCTCCGTCTCGGTCTCCGCCCCTTaaacagcagagagacagacgagCACGCAGTGaggagcgagacagagagaaacctCCTCAACGGAAAAGACACGACTCCTCCTCTCCGTCACAGTCTCCGAAACGCCAGAGAGACAGGAGGCAGAGGAGCGTCGAGAAAGAGCGAGAGGacgagaggaggaagagggacAACAAACCCCAGAAAAGACACGACTCGTCGTCATCGCCGTCGCCTTCACCGCAGAGGGACAGAGCGCGGAGAGGACGCAGCGGCGAGAAGGAGAGAGCGTCTTCTCCCGCACGTCCTTCAGACAGGGACAGAACGAGGGACAGAGACGCCGTCCCGCAGAGTCGGGTCAGAGAGAGCGATaaacggagagagagagcccGCTCCAGCGACTCGCCCGGGTCACCTGCCCGCCGCTCGCCACGCTCCAACGGAAAGCAGAAAGAGGCGGAGCGAGCGAGGGAGAGGGAGCgagaggagcagagagagaaagagcgggAGGAGGCGAGAAGaaaagaacgagagagagatgcagaaaaGGGACGAGAAGAGgcgaagagaaaagagagagagagtgacagggAAAAGGGACGAGAGGAGACGAGGAGAAATGAGCGAGAGAACGACAAAGAAAAGGAACGAGAGGAGACGAGGAGAAACGAGCGAGAGAATGATAGAGAAAAGGGACGAGAGGAGACGAGGAAGAACGAGCGAGAGAGCGATAGAGATAAGGGACGAGAGGAGACGAAGAGAAATGAGCGAGAGAACGACAGAGAAAAGGGAAGAGAGGAGATGAGGAAGAACGAGCGAGGGAACGACAGAGAAAAGGAACGAGAGGAGGCGAAGAGAAGAGAGCGAGAAAAAGACAGGAGACGCTCTGAAGAGAGACCCTCCGGGAAAGACGGGGAGACGGGAGACAGGAAGACGGACCGAGACAAAGCCGAGACGGAGAGACGAGACGAGAAGGTGAGGGAGGACGAGAGGCCGGGGAGAACTCAGGAGAAGAGTCcactggagaaagagagagagaaagcgcaaagcaaggagaaggagaaaaagaaatccAAAGGTTCGAGCAGCAGCagtgacagcagcagcagcagcagtgacagcagcagcagcagcagtgacagCGACTCCGACAGTTCCTCATcgtcatcttcctcctcctcttcctcctcctcttcctcctcttcctcctccgacgatgaaaagaaggagaaaagtaAAGAGGCGCCTCACGCCGTCGTAGCGCAGGCGGCGGCTcggaaagagaaggagaaagagaatggAGGGAGAGACGCAGACAGGTACACGCCCACAGAGAGGGAGAGCTCCGCCCCTGTATCCACACAGGCTCCGCCCACCCGAAAGGACGACAGGGATAGAGGCAGAGACAAGAGATCTCCATCTCCTCAGAAGGAacgacagaaagagagagagcaagggaaAGAGAGGTACACTCCCACCGAGACATCGAGCCCTCCTCCGTCTCCTCCATCACGAAGGAGATACAGTCCGGAGGAGAACGTAAGAACCCACGGCAAAGATCTGGAGAAGTCCAGGGAGCGCGGGAGCGACCGGTACACGCCCATGGACCTCGAGCGCCGAGAGAAGAACAGGACGAGCGAGAGAAAGCGGCCGTCTCCACCCAGAGCTCGGGAGGAGGAGATCCAGAACAAACGGGCTGCATCCCCGTCACGTTCTCCATCACGTTCTCCGTCACGATCTCCTGCACGACAGCGCGCAGATCCTCCACGCTCCCCGAGCCCGAAGCGAGGCGTCAGGAGAGCGACACCGCCCTCGCGCCgagaccgagagagagacagagagagagaccgagacaGAGGGAggccggagagagagagagagcacgccACGAGAAGGAGGACGAGAAGCAGCAGGTCACGAAGCCCACGCAGACGCTCACCTCCGTACAGGTCCCGTCGTTCTCCTTCTCCTGCGTATCGGCGCAGAAGTAGTCGCTCTCTGtccagagaaagggagagagagagggagcgggaaaaagagagggagagagagcgagaaaaagagagagagagggaaaaagagagggagagagagagacatcgtgaacaagagagggagagggagcgggagcaggagagggagagagaacgagaacgtgaaaaagagagagaaaagaaagcaagatCACCTCCTCGTCGCTCTCCATCTTCTTCCTCTACGTCTTCATCCTCCTCGAGTTCGTCCTCTTCGTCCTCGCCCTCTCCTCAGAGGAAACCTGATCCCCAGAAGGACAGAAAGCCCGAGAAGAGGCTCCGTTCTCGTTCCTCCTCACCCCGTCCCGCTCGGGATTCTCCTAAACGCTCCAGACAACCGCCTCCGCGCTCCAGATCTCCTCccgtcagccaatcagataCGAGAAAGACCTCGAGGGGTCGCTCGAGGAGCCAGTCACCTGCTGAGCGACGCACGACTCGGAGCCAGGAGCGGCCAATCAGAGGAGAGAACGCGGTGAACGGGAGAGCAGAGAAGGAAGTCGTGAAGCAACAGAAGAGCGACAGCAGGAGCAGCTCCAGCTCTTCGTCGTCCTCGTCGTCATCGTCGTCTTCATCCTCGTCCTCTGATAGCTCCGACTCTGAGACGGAGAAAGGGCAAGGGAAAGCGGCAGCGAGTAGACGCTCGTCCTCGTCAGAGAGCGAGGaagtgaagaagaaaagTCCTCCACGTCGGCCGAGAGAACCTGCAGACTCGCTCAGAGACTCCAGATCGCTCAGCTACTCTCCTCCTGCACGTCTGCGCCGAGCCGCACGCTCTCCCCCCGCGCGGAGGAGATCGAGGAGCAGGTCGAGCAGCCGGCGGAGAAAATAGTTAATCGCGCTGTACATCACTGAAGCGTTCTTCGTCTAGTTCTTTTCCCTGACCTTTCTATTGTGTctttggagggaaaaaaagaagaagaaaaaaaaagtcccggcagaaaaatatttgtaaattatgATCCACACGGACTGGAGCGAGGAATCATCTCAGATTTTCTGCACTCACGTTCACCCACAGGGatgtttttggtttattttttactttcattgcggtgatgatgatgatgatgatgatgatgatgatgatgaggatgaggaaagagagagagaagtaaaacCATAGACACGTCATGTGTTTCTCCGTGCCAACACAAACCTGAATActcgattataaataaataaataaatacaccggtgtctctctctctctctctctctgtctctctctctctctctctctctctctctctctctctctctctctctctctctctctctgccctgcTGCGTTGTTCTGAATGTAGATAAAAGTCACTATGGTCAGAACCGTCACTGAGTGGACCTTGTCCTGCTTACACgcctttttctttcactttgtgGGAAAAGTCAAGgactaatgaataaataataaatggttgtatctgta

Function

NR:

description
unnamed protein product

GO: NA

KEGG:

id description
K13172 SRRM2, SRM300; serine/arginine repetitive matrix protein 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026911435.2 True 4761 mRNA 0.55 15 653037 666347

Neighbor

gene id symbol gene type direction distance location
bcl2l12 NA coding upstream 66581 573394 ~ 586456 (+)
LOC113524995 NA coding upstream 89628 555289 ~ 563409 (+)
pax10 LOC108280587,LOC107557340,LOC106521360,LOC107579793 coding upstream 103672 543400 ~ 549365 (+)
nosip nosip,LOC107658495,LOC107729514,LOC107583007 coding upstream 145907 496444 ~ 507130 (+)
LOC113525007 LOC108280579,LOC108427364,LOC100007086,LOC107554108 coding upstream 157468 486254 ~ 495569 (+)
si:dkey-16l2.16 si:dkey-16l2.16,LOC108280555,LOC108427354,LOC107729502,LOC107554119,LOC107658507 coding downstream 23842 690189 ~ 705453 (+)
kat8 kat8,LOC107658503,LOC107554120,LOC107582998 coding downstream 51270 717617 ~ 726285 (+)
hsd3b7 hsd3b7 coding downstream 145679 812026 ~ 849880 (+)
LOC113527857 itpripl2 coding downstream 198866 865213 ~ 882642 (+)
syt17 syt17,LOC107729446,LOC107658452,LOC107732856,LOC107564007 coding downstream 222914 889261 ~ 911910 (+)
G203303 NA non-coding upstream 21455 631290 ~ 631582 (+)
G203296 NA non-coding upstream 28417 623115 ~ 624620 (+)
G203278 NA non-coding upstream 40482 610704 ~ 612555 (+)
G203281 LOC108261056,LOC108428278 non-coding upstream 54314 595178 ~ 598723 (+)
G203277 NA non-coding upstream 66155 586589 ~ 586882 (+)
G203328 NA non-coding downstream 13431 679778 ~ 686630 (+)
G203321 NA non-coding downstream 71992 738339 ~ 738727 (+)
G203339 NA non-coding downstream 75485 741832 ~ 743740 (+)
G203357 NA non-coding downstream 151044 817391 ~ 884366 (+)
G203327 NA non-coding downstream 392332 1058679 ~ 1060521 (+)
unc119.2 LOC108280499,LOC107689658,LOC107730769,LOC107658437,LOC108427309 other upstream 787 649444 ~ 652250 (+)
LOC117598976 NA other upstream 123413 523113 ~ 529624 (+)
LOC113525016 NA other upstream 285182 281212 ~ 367855 (+)
prl LOC108280547,LOC108427375,LOC103023606 other upstream 293683 266880 ~ 359354 (+)
G203077 NA other upstream 311761 199260 ~ 341276 (+)
thoc6 thoc6,LOC107580143,LOC108280484,LOC107730738,LOC107689651,LOC106600718 other downstream 461 666808 ~ 723692 (+)
rnf25 rnf25 other downstream 41391 707738 ~ 717019 (+)
si:dkey-16l2.17 LOC108280473 other downstream 60382 726729 ~ 732890 (+)
fus fus,LOC107658502,LOC107729526 other downstream 86720 753067 ~ 774250 (+)
setd1a setd1a,LOC107737760,LOC107554121,LOC107729457 other downstream 112493 778840 ~ 806345 (+)

Expression


Co-expression Network