si:ch73-248e21.5


Basic Information

Item Value
gene id si:ch73-248e21.5
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 642509 ~ 644586 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026911438.2
CCAAACAGTCATTTCCGCCTAGAGTCCGCCTGGTGGTGTGAAGTATCCCAGAAAGCATCTGTGGCAAGAGTTGCATGCGCAAAAGAGGAAACCATGGAGAAAGGGgaagagatgagatgatgagacgCACAGAAAAAAAGAACACATCATGAGGAAGACGAGCGCCGTGTCTCTAACCGTCTGGTTTGCTCAGGTTCTAACGCTCTGTGCTCTTCATGAAAACCTCCTGACCACACAGGAGCTGGACGTCTCCATAACAACCTCAGAAAAACTCACAACAAACCAAGATGTCAGGACGAAAACAGAAACGATGGCAGTGATGACCACAACAATGTCAGCAGAGGAGTTGTTGTCAGATTGGACGCCACATCTGACACCCACACTGGAGACGAACGGCTTTACGAGCTCGGTGGAGGACAAAAGGAGAAATAACACGATCAGCACCTCTCACCACAACATCATGAGTCCCACCGAGATGACTGTCTCTACAAACACCACAAGTGTCGTGACGGAATACCAAGAAACAAGAACTGGCACTGAAAGTACAAGTCTAAACATTCAGGAGATGACTGAGATTTCAACATCTGGAACATCCATCCAACTGGACCAGGATGTCCAAACAACAACATCTACGAGTTGGACAGAAGATAGAACGAGTGATACTGATGAAGACAACGCCACCACTCTGATTCACTCAACATACAAGACTGATGTAACACTAACTAGCGGAAGTTATGACACAACAGACCACCAAAGTCCAGCTCCAACTACAGCAGGAACCTCTCTGGAGATATTTTCTACGAACCAAACACATCCAGATGACACCATGAACACTGTCACACCTACAGGAACATCAGGACGTATCAATATAACAGCAACGTCAGTCCGTTCTACACAAGTTACAAGCGGCtccacagagaacacagaggaacCCCTGGTGTCTAGTACGAAGATGATGGACTGGGAAACGGAGGAGAACACCGAAGTTCTCGCAACAACTCGAGGAAATGTGTATGAAAACACGTCAAACACAACTTGGAGAGACGGAACATGGTCTACGAACCCTCAAGACACCTGGagcaccagcaccaccaccacgTCCAAGAACACCTCCACATCAGCGACACCACACTGGACGAACTGCTTCGATGAGGATTCATCACCTCAGCCTCGCCGTTTCTCAAAGCTGGTCTGTTTCATCACACTGTGGACTCTCACTATGATTGCATCCATCTTCCTGGGTCTCACTGTGTTCCTGTGGGTGAGTCTGTCCGTCAGAAAAAAGAGGGCAAGACGCACGGGACGAGGATGGAGGGACAGAAAAGGACAAGGTCCAGGAGCGAAAGACAGCCTGTGGGCGGAGCTGGGCTCGTCCGCAGAGGAGAGAGTGGAGTTCTGGTACACTGATGGGGCCACGGTGGAGGAGGACAAGAGAAAACACAGAGCGAGACAAGCGAGGACGAGGAAGAACGGAGAGAAACAGGTGGAGACAGAGGAGGAAATGTGGATCCAGCCGAAGGTGACTCTAAAGGACATCACAGAGTTCTGGTACGCAAACGGGAGAGTGAGACACGAAGAGGAGACACAATGCGAACTCAAcgaagaatgagagagacagagagaaagaaacagagtgaaggagagagacacacagagtgacagaaagatggagaaaaagagagagaaacatttagagtgaaagacagagagatagacagagacaa
>XM_034309728.1
tattctttttgtttgttcaaatgAAAGACGGTGAGATATCAGAGGAAAAGTCAGAGGGTTTGGTTCTGAGTTTTCGGAGTTTCTCTTCTCTAGAACACATCATGAGGAAGACGAGCGCCGTGTCTCTAACCGTCTGGTTTGCTCAGGTTCTAACGCTCTGTGCTCTTCATGAAAACCTCCTGACCACACAGGAGCTGGACGTCTCCATAACAACCTCAGAAAAACTCACAACAAACCAAGATGTCAGGACGAAAACAGAAACGATGGCAGTGATGACCACAACAATGTCAGCAGAGGAGTTGTTGTCAGATTGGACGCCACATCTGACACCCACACTGGAGACGAACGGCTTTACGAGCTCGGTGGAGGACAAAAGGAGAAATAACACGATCAGCACCTCTCACCACAACATCATGAGTCCCACCGAGATGACTGTCTCTACAAACACCACAAGTGTCGTGACGGAATACCAAGAAACAAGAACTGGCACTGAAAGTACAAGTCTAAACATTCAGGAGATGACTGAGATTTCAACATCTGGAACATCCATCCAACTGGACCAGGATGTCCAAACAACAACATCTACGAGTTGGACAGAAGATAGAACGAGTGATACTGATGAAGACAACGCCACCACTCTGATTCACTCAACATACAAGACTGATGTAACACTAACTAGCGGAAGTTATGACACAACAGACCACCAAAGTCCAGCTCCAACTACAGCAGGAACCTCTCTGGAGATATTTTCTACGAACCAAACACATCCAGATGACACCATGAACACTGTCACACCTACAGGAACATCAGGACGTATCAATATAACAGCAACGTCAGTCCGTTCTACACAAGTTACAAGCGGCtccacagagaacacagaggaacCCCTGGTGTCTAGTACGAAGATGATGGACTGGGAAACGGAGGAGAACACCGAAGTTCTCGCAACAACTCGAGGAAATGTGTATGAAAACACGTCAAACACAACTTGGAGAGACGGAACATGGTCTACGAACCCTCAAGACACCTGGagcaccagcaccaccaccacgTCCAAGAACACCTCCACATCAGCGACACCACACTGGACGAACTGCTTCGATGAGGATTCATCACCTCAGCCTCGCCGTTTCTCAAAGCTGGTCTGTTTCATCACACTGTGGACTCTCACTATGATTGCATCCATCTTCCTGGGTCTCACTGTGTTCCTGTGGGTGAGTCTGTCCGTCAGAAAAAAGAGGGCAAGACGCACGGGACGAGGATGGAGGGACAGAAAAGGACAAGGTCCAGGAGCGAAAGACAGCCTGTGGGCGGAGCTGGGCTCGTCCGCAGAGGAGAGAGTGGAGTTCTGGTACACTGATGGGGCCACGGTGGAGGAGGACAAGAGAAAACACAGAGCGAGACAAGCGAGGACGAGGAAGAACGGAGAGAAACAGGTGGAGACAGAGGAGGAAATGTGGATCCAGCCGAAGGTGACTCTAAAGGACATCACAGAGTTCTGGTACGCAAACGGGAGAGTGAGACACGAAGAGGAGACACAATGCGAACTCAAcgaagaatgagagagacagagagaaagaaacagagtgaaggagagagacacacagagtgacagaaagatggagaaaaagagagagaaacatttagagtgaaagacagagagatagacagagacaa
>XM_034309729.1
CCAAACAGTCATTTCCGCCTAGAGTCCGCCTGGTGGTGTGAAGTATCCCAGAAAGCATCTGTGGCAAGAGTTGCATGCGCAAAAGAGGAAACCATGGAGAAAGGGgaagagatgagatgatgagacgCACAGAAAAAACCTTCTCTAGAACACATCATGAGGAAGACGAGCGCCGTGTCTCTAACCGTCTGGTTTGCTCAGGTTCTAACGCTCTGTGCTCTTCATGAAAACCTCCTGACCACACAGGAGCTGGACGTCTCCATAACAACCTCAGAAAAACTCACAACAAACCAAGATGTCAGGACGAAAACAGAAACGATGGCAGTGATGACCACAACAATGTCAGCAGAGGAGTTGTTGTCAGATTGGACGCCACATCTGACACCCACACTGGAGACGAACGGCTTTACGAGCTCGGTGGAGGACAAAAGGAGAAATAACACGATCAGCACCTCTCACCACAACATCATGAGTCCCACCGAGATGACTGTCTCTACAAACACCACAAGTGTCGTGACGGAATACCAAGAAACAAGAACTGGCACTGAAAGTACAAGTCTAAACATTCAGGAGATGACTGAGATTTCAACATCTGGAACATCCATCCAACTGGACCAGGATGTCCAAACAACAACATCTACGAGTTGGACAGAAGATAGAACGAGTGATACTGATGAAGACAACGCCACCACTCTGATTCACTCAACATACAAGACTGATGTAACACTAACTAGCGGAAGTTATGACACAACAGACCACCAAAGTCCAGCTCCAACTACAGCAGGAACCTCTCTGGAGATATTTTCTACGAACCAAACACATCCAGATGACACCATGAACACTGTCACACCTACAGGAACATCAGGACGTATCAATATAACAGCAACGTCAGTCCGTTCTACACAAGTTACAAGCGGCtccacagagaacacagaggaacCCCTGGTGTCTAGTACGAAGATGATGGACTGGGAAACGGAGGAGAACACCGAAGTTCTCGCAACAACTCGAGGAAATGTGTATGAAAACACGTCAAACACAACTTGGAGAGACGGAACATGGTCTACGAACCCTCAAGACACCTGGagcaccagcaccaccaccacgTCCAAGAACACCTCCACATCAGCGACACCACACTGGACGAACTGCTTCGATGAGGATTCATCACCTCAGCCTCGCCGTTTCTCAAAGCTGGTCTGTTTCATCACACTGTGGACTCTCACTATGATTGCATCCATCTTCCTGGGTCTCACTGTGTTCCTGTGGGTGAGTCTGTCCGTCAGAAAAAAGAGGGCAAGACGCACGGGACGAGGATGGAGGGACAGAAAAGGACAAGGTCCAGGAGCGAAAGACAGCCTGTGGGCGGAGCTGGGCTCGTCCGCAGAGGAGAGAGTGGAGTTCTGGTACACTGATGGGGCCACGGTGGAGGAGGACAAGAGAAAACACAGAGCGAGACAAGCGAGGACGAGGAAGAACGGAGAGAAACAGGTGGAGACAGAGGAGGAAATGTGGATCCAGCCGAAGGTGACTCTAAAGGACATCACAGAGTTCTGGTACGCAAACGGGAGAGTGAGACACGAAGAGGAGACACAATGCGAACTCAAcgaagaatgagagagacagagagaaagaaacagagtgaaggagagagacacacagagtgacagaaagatggagaaaaagagagagaaacatttagagtgaaagacagagagatagacagagacaa
>XM_034309730.1
CCAAACAGTCATTTCCGCCTAGAGTCCGCCTGGTGGTGTGAAGTATCCCAGAAAGCATCTGTGGCAAGAGTTGCATGCGCAAAAGAGGAAACCATGGAGAAAGGGgaagagatgagatgatgagacgCACAGAAAAAAGAACACATCATGAGGAAGACGAGCGCCGTGTCTCTAACCGTCTGGTTTGCTCAGGTTCTAACGCTCTGTGCTCTTCATGAAAACCTCCTGACCACACAGGAGCTGGACGTCTCCATAACAACCTCAGAAAAACTCACAACAAACCAAGATGTCAGGACGAAAACAGAAACGATGGCAGTGATGACCACAACAATGTCAGCAGAGGAGTTGTTGTCAGATTGGACGCCACATCTGACACCCACACTGGAGACGAACGGCTTTACGAGCTCGGTGGAGGACAAAAGGAGAAATAACACGATCAGCACCTCTCACCACAACATCATGAGTCCCACCGAGATGACTGTCTCTACAAACACCACAAGTGTCGTGACGGAATACCAAGAAACAAGAACTGGCACTGAAAGTACAAGTCTAAACATTCAGGAGATGACTGAGATTTCAACATCTGGAACATCCATCCAACTGGACCAGGATGTCCAAACAACAACATCTACGAGTTGGACAGAAGATAGAACGAGTGATACTGATGAAGACAACGCCACCACTCTGATTCACTCAACATACAAGACTGATGTAACACTAACTAGCGGAAGTTATGACACAACAGACCACCAAAGTCCAGCTCCAACTACAGCAGGAACCTCTCTGGAGATATTTTCTACGAACCAAACACATCCAGATGACACCATGAACACTGTCACACCTACAGGAACATCAGGACGTATCAATATAACAGCAACGTCAGTCCGTTCTACACAAGTTACAAGCGGCtccacagagaacacagaggaacCCCTGGTGTCTAGTACGAAGATGATGGACTGGGAAACGGAGGAGAACACCGAAGTTCTCGCAACAACTCGAGGAAATGTGTATGAAAACACGTCAAACACAACTTGGAGAGACGGAACATGGTCTACGAACCCTCAAGACACCTGGagcaccagcaccaccaccacgTCCAAGAACACCTCCACATCAGCGACACCACACTGGACGAACTGCTTCGATGAGGATTCATCACCTCAGCCTCGCCGTTTCTCAAAGCTGGTCTGTTTCATCACACTGTGGACTCTCACTATGATTGCATCCATCTTCCTGGGTCTCACTGTGTTCCTGTGGGTGAGTCTGTCCGTCAGAAAAAAGAGGGCAAGACGCACGGGACGAGGATGGAGGGACAGAAAAGGACAAGGTCCAGGAGCGAAAGACAGCCTGTGGGCGGAGCTGGGCTCGTCCGCAGAGGAGAGAGTGGAGTTCTGGTACACTGATGGGGCCACGGTGGAGGAGGACAAGAGAAAACACAGAGCGAGACAAGCGAGGACGAGGAAGAACGGAGAGAAACAGGTGGAGACAGAGGAGGAAATGTGGATCCAGCCGAAGGTGACTCTAAAGGACATCACAGAGTTCTGGTACGCAAACGGGAGAGTGAGACACGAAGAGGAGACACAATGCGAACTCAAcgaagaatgagagagacagagagaaagaaacagagtgaaggagagagacacacagagtgacagaaagatggagaaaaagagagagaaacatttagagtgaaagacagagagatagacagagacaa
>XM_034309731.1
CCAAACAGTCATTTCCGCCTAGAGTCCGCCTGGTGGTGTGAAGTATCCCAGAAAGCATCTGTGGCAAGAGTTGCATGCGCAAAAGAGGAAACCATGGAGAAAGGGgaagagatgagatgatgagacgCACAGAAAAAAAGCTTCTCTAGAACACATCATGAGGAAGACGAGCGCCGTGTCTCTAACCGTCTGGTTTGCTCAGGTTCTAACGCTCTGTGCTCTTCATGAAAACCTCCTGACCACACAGGAGCTGGACGTCTCCATAACAACCTCAGAAAAACTCACAACAAACCAAGATGTCAGGACGAAAACAGAAACGATGGCAGTGATGACCACAACAATGTCAGCAGAGGAGTTGTTGTCAGATTGGACGCCACATCTGACACCCACACTGGAGACGAACGGCTTTACGAGCTCGGTGGAGGACAAAAGGAGAAATAACACGATCAGCACCTCTCACCACAACATCATGAGTCCCACCGAGATGACTGTCTCTACAAACACCACAAGTGTCGTGACGGAATACCAAGAAACAAGAACTGGCACTGAAAGTACAAGTCTAAACATTCAGGAGATGACTGAGATTTCAACATCTGGAACATCCATCCAACTGGACCAGGATGTCCAAACAACAACATCTACGAGTTGGACAGAAGATAGAACGAGTGATACTGATGAAGACAACGCCACCACTCTGATTCACTCAACATACAAGACTGATGTAACACTAACTAGCGGAAGTTATGACACAACAGACCACCAAAGTCCAGCTCCAACTACAGCAGGAACCTCTCTGGAGATATTTTCTACGAACCAAACACATCCAGATGACACCATGAACACTGTCACACCTACAGGAACATCAGGACGTATCAATATAACAGCAACGTCAGTCCGTTCTACACAAGTTACAAGCGGCtccacagagaacacagaggaacCCCTGGTGTCTAGTACGAAGATGATGGACTGGGAAACGGAGGAGAACACCGAAGTTCTCGCAACAACTCGAGGAAATGTGTATGAAAACACGTCAAACACAACTTGGAGAGACGGAACATGGTCTACGAACCCTCAAGACACCTGGagcaccagcaccaccaccacgTCCAAGAACACCTCCACATCAGCGACACCACACTGGACGAACTGCTTCGATGAGGATTCATCACCTCAGCCTCGCCGTTTCTCAAAGCTGGTCTGTTTCATCACACTGTGGACTCTCACTATGATTGCATCCATCTTCCTGGGTCTCACTGTGTTCCTGTGGGTGAGTCTGTCCGTCAGAAAAAAGAGGGCAAGACGCACGGGACGAGGATGGAGGGACAGAAAAGGACAAGGTCCAGGAGCGAAAGACAGCCTGTGGGCGGAGCTGGGCTCGTCCGCAGAGGAGAGAGTGGAGTTCTGGTACACTGATGGGGCCACGGTGGAGGAGGACAAGAGAAAACACAGAGCGAGACAAGCGAGGACGAGGAAGAACGGAGAGAAACAGGTGGAGACAGAGGAGGAAATGTGGATCCAGCCGAAGGTGACTCTAAAGGACATCACAGAGTTCTGGTACGCAAACGGGAGAGTGAGACACGAAGAGGAGACACAATGCGAACTCAAcgaagaatgagagagacagagagaaagaaacagagtgaaggagagagacacacagagtgacagaaagatggagaaaaagagagagaaacatttagagtgaaagacagagagatagacagagacaa
>XM_034309732.1
aatgAAAGACGGTGAGATATCAGAGGAAAAGTCAGAGGGTTTGGTTCTGAGTTTTCGGAGTTTCTAACACATCATGAGGAAGACGAGCGCCGTGTCTCTAACCGTCTGGTTTGCTCAGGTTCTAACGCTCTGTGCTCTTCATGAAAACCTCCTGACCACACAGGAGCTGGACGTCTCCATAACAACCTCAGAAAAACTCACAACAAACCAAGATGTCAGGACGAAAACAGAAACGATGGCAGTGATGACCACAACAATGTCAGCAGAGGAGTTGTTGTCAGATTGGACGCCACATCTGACACCCACACTGGAGACGAACGGCTTTACGAGCTCGGTGGAGGACAAAAGGAGAAATAACACGATCAGCACCTCTCACCACAACATCATGAGTCCCACCGAGATGACTGTCTCTACAAACACCACAAGTGTCGTGACGGAATACCAAGAAACAAGAACTGGCACTGAAAGTACAAGTCTAAACATTCAGGAGATGACTGAGATTTCAACATCTGGAACATCCATCCAACTGGACCAGGATGTCCAAACAACAACATCTACGAGTTGGACAGAAGATAGAACGAGTGATACTGATGAAGACAACGCCACCACTCTGATTCACTCAACATACAAGACTGATGTAACACTAACTAGCGGAAGTTATGACACAACAGACCACCAAAGTCCAGCTCCAACTACAGCAGGAACCTCTCTGGAGATATTTTCTACGAACCAAACACATCCAGATGACACCATGAACACTGTCACACCTACAGGAACATCAGGACGTATCAATATAACAGCAACGTCAGTCCGTTCTACACAAGTTACAAGCGGCtccacagagaacacagaggaacCCCTGGTGTCTAGTACGAAGATGATGGACTGGGAAACGGAGGAGAACACCGAAGTTCTCGCAACAACTCGAGGAAATGTGTATGAAAACACGTCAAACACAACTTGGAGAGACGGAACATGGTCTACGAACCCTCAAGACACCTGGagcaccagcaccaccaccacgTCCAAGAACACCTCCACATCAGCGACACCACACTGGACGAACTGCTTCGATGAGGATTCATCACCTCAGCCTCGCCGTTTCTCAAAGCTGGTCTGTTTCATCACACTGTGGACTCTCACTATGATTGCATCCATCTTCCTGGGTCTCACTGTGTTCCTGTGGGTGAGTCTGTCCGTCAGAAAAAAGAGGGCAAGACGCACGGGACGAGGATGGAGGGACAGAAAAGGACAAGGTCCAGGAGCGAAAGACAGCCTGTGGGCGGAGCTGGGCTCGTCCGCAGAGGAGAGAGTGGAGTTCTGGTACACTGATGGGGCCACGGTGGAGGAGGACAAGAGAAAACACAGAGCGAGACAAGCGAGGACGAGGAAGAACGGAGAGAAACAGGTGGAGACAGAGGAGGAAATGTGGATCCAGCCGAAGGTGACTCTAAAGGACATCACAGAGTTCTGGTACGCAAACGGGAGAGTGAGACACGAAGAGGAGACACAATGCGAACTCAAcgaagaatgagagagacagagagaaagaaacagagtgaaggagagagacacacagagtgacagaaagatggagaaaaagagagagaaacatttagagtgaaagacagagagatagacagagacaa

Function

NR:

description
cell wall protein IFF7-like

GO:

id name namespace
GO:0050900 leukocyte migration biological_process
GO:0030595 leukocyte chemotaxis biological_process
GO:0060326 cell chemotaxis biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026911438.2 False 1724 mRNA 0.49 2 642509 644586
XM_034309728.1 False 1677 mRNA 0.48 2 642509 644431
XM_034309729.1 False 1732 mRNA 0.49 2 642509 644586
XM_034309730.1 False 1723 mRNA 0.49 2 642509 644586
XM_034309731.1 True 1733 mRNA 0.49 2 642509 644586
XM_034309732.1 False 1649 mRNA 0.49 2 642509 644412

Neighbor

gene id symbol gene type direction distance location
si:ch73-248e21.7 NA coding downstream 3302 635684 ~ 639207 (-)
tspan4b LOC108280533,LOC107729542,LOC107658498,LOC108427360 coding downstream 11798 622345 ~ 630711 (-)
LOC113525013 NA coding downstream 28323 611190 ~ 614186 (-)
rcn3 rcn3 coding downstream 125559 507370 ~ 516950 (-)
si:ch211-195b15.7 LOC108280346 coding downstream 225934 405926 ~ 416575 (-)
clec19a clec19a,LOC107658453,LOC107583104 coding upstream 275421 920007 ~ 931906 (-)
LOC113528078 cox6a2,LOC108280912,LOC107564019,LOC103367329,LOC107583062,LOC107658449 coding upstream 411784 1056370 ~ 1061679 (-)
LOC113528610 LOC108280679 coding upstream 466923 1111509 ~ 1119731 (-)
LOC117598757 LOC108280700,LOC108280715,LOC108280689,LOC108280710,LOC108280734 coding upstream 476580 1121166 ~ 1126092 (-)
LOC113528091 LOC108280723 coding upstream 499359 1143945 ~ 1148157 (-)
LOC117598763 NA non-coding downstream 75711 551404 ~ 566798 (-)
G203271 NA non-coding downstream 92798 549463 ~ 549711 (-)
G203268 NA non-coding downstream 108926 533292 ~ 533583 (-)
G203261 NA non-coding downstream 136597 505316 ~ 505912 (-)
G203157 NA non-coding downstream 283128 356233 ~ 359381 (-)
G203425 NA non-coding upstream 20952 665538 ~ 669489 (-)
G203471 NA non-coding upstream 48913 693499 ~ 693886 (-)
G203458 NA non-coding upstream 75503 720089 ~ 763924 (-)
G203456 NA non-coding upstream 84225 728811 ~ 738745 (-)
G203486 NA non-coding upstream 93283 737869 ~ 745841 (-)
G203254 NA other downstream 152778 486222 ~ 489731 (-)
G203154 NA other downstream 308865 331541 ~ 333644 (-)
G203170 NA other downstream 479925 162126 ~ 162584 (-)
pih1d1 pih1d1 other downstream 539396 80628 ~ 103113 (-)
aldh16a1 aldh16a1 other downstream 588234 26642 ~ 54275 (-)
LOC117598978 NA other upstream 95082 739668 ~ 750458 (-)
G203488 NA other upstream 96658 741244 ~ 750799 (-)
LOC117598979 NA other upstream 105477 750063 ~ 753822 (-)
G203544 NA other upstream 265531 910117 ~ 911228 (-)
si:dkey-66i24.7 LOC108280857,LOC108427346 other upstream 303144 947730 ~ 1066820 (-)

Expression


Co-expression Network