tnnt1 (tnnt1,LOC108427325,LOC108280528,LOC107583024)


Basic Information

Item Value
gene id tnnt1
gene name tnnt1,LOC108427325,LOC108280528,LOC107583024
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 65197 ~ 78964 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026911780.2
GTTACCCTGCGTGTATAAAAAGAGCCTCACTGTTCCCCACTACAATCACTGCACCtccacagagtgtgtgtgtctcatccTCAGCAACATCCTCCACAGCTCACTAAGAGTCTGAATCATGTCTGATGTAGAAGAAGAATACGAAGAGCAGGCGGAGGAGGCAGAAGAGGaacaagaggaagaagaagccATCAGACAGGAGGATGAAGAGCAGCAGGAATACACGGATTATCAAGAAGAAAACCAGGAAGAAGAGGAGGAACGGCCACGCCCCAAGCCGATGGCTCCTCAACTCGCTCCTCCGAAGATCCCTGAAGGAGAGAGAGTCGACTTCGATgACATTCACAGGAAGAGGATGGAGAAAGACCTGTTGGAGTTGCAGACTCTGATTGAGGCTCACTTTGAGCagaggaagaaggaggaggaggagctgatTGGACTGAAGGAGCGAATTGAGAGACGGCGCTCGGAGAGAGCCGAGCAGCAGCGTGTCCGAGCTGAGAAAGAGCGAGACCGACAAACACGCATTGCTGAAGAACGTCAGAggaaggaggatgaggaggcaAAGAAGAGAGCAGATGATGAAGCTAAGAAGAAGAAAGTTTTGTCCAACATGGGAGCAAATTTTGGTGGCTTCCTCGCTaaggcAGAGCAGAGACGAGGGAAGCGTTTGACTGGGAGGGAAATAAAGCGGAAAACTTTATCAGAAAGACGAGCAGCTCTCGGCATTGAAAATTTGAGAGAGGACGGACTGAGGCAGCGAGCTCAGGAGATGTGGGAGTGGATTTATCAGCTGGAGTCGGAGAAGTTTGACTTCATGGATCAGATGAAGAGGCAGAAATATGAGATTGTGGTTCTGCTAAACAGGATTTCACACGCCCAAAAGTTcaAAAAGGTCCATGGAAAGGGAAAAGTCGGAGGTCGCTGGAAATAAACTGTTTTGTTCTTACAAAGCAGAAGTTAGAAAACGGAtgcagagaaaacagaaatgaaattagacaagaaatggaataaaaaaaacctcttcctcttcactcattcacagaATCTGCACACTCGTctttagaataaaaa
>XM_026911781.2
CTGTTACCCTGCGTGTATAAAAAGAGCCTCACTGTTCCCCACTACAATCACTGCACCtccacagagtgtgtgtgtctcatccTCAGCAACATCCTCCACAGCTCACTAAGAGTCTGAATCATGTCTGATGTAGAAGAAGAATACGAAGAGCAGGCGGAGGAGGCAGAAGAGGaacaagaggaagaagaagccATCAGACAGGAGGATGAAGAGCAGCAGGAATACACGGATTATCAAGAGGAGGAACGGCCACGCCCCAAGCCGATGGCTCCTCAACTCGCTCCTCCGAAGATCCCTGAAGGAGAGAGAGTCGACTTCGATgACATTCACAGGAAGAGGATGGAGAAAGACCTGTTGGAGTTGCAGACTCTGATTGAGGCTCACTTTGAGCagaggaagaaggaggaggaggagctgatTGGACTGAAGGAGCGAATTGAGAGACGGCGCTCGGAGAGAGCCGAGCAGCAGCGTGTCCGAGCTGAGAAAGAGCGAGACCGACAAACACGCATTGCTGAAGAACGTCAGAggaaggaggatgaggaggcaAAGAAGAGAGCAGATGATGAAGCTAAGAAGAAGAAAGTTTTGTCCAACATGGGAGCAAATTTTGGTGGCTTCCTCGCTaaggcAGAGCAGAGACGAGGGAAGCGTTTGACTGGGAGGGAAATAAAGCGGAAAACTTTATCAGAAAGACGAGCAGCTCTCGGCATTGAAAATTTGAGAGAGGACGGACTGAGGCAGCGAGCTCAGGAGATGTGGGAGTGGATTTATCAGCTGGAGTCGGAGAAGTTTGACTTCATGGATCAGATGAAGAGGCAGAAATATGAGATTGTGGTTCTGCTAAACAGGATTTCACACGCCCAAAAGTTcaAAAAGGTCCATGGAAAGGGAAAAGTCGGAGGTCGCTGGAAATAAACTGTTTTGTTCTTACAAAGCAGAAGTTAGAAAACGGAtgcagagaaaacagaaatgaaattagacaagaaatggaataaaaaaaacctcttcctcttcactcattcacagaATCTGCACACTCGTctttagaataaaaa

Function

symbol description
tnnt1 Predicted to enable tropomyosin binding activity and troponin T binding activity. Predicted to be involved in sarcomere organization and slow-twitch skeletal muscle fiber contraction. Predicted to act upstream of or within regulation of muscle contraction. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be part of troponin complex. Is expressed in muscle and slow muscle cell. Human ortholog(s) of this gene implicated in nemaline myopathy 5. Orthologous to human TNNT1 (troponin T1, slow skeletal type).

NR:

description
PREDICTED: troponin T, slow skeletal muscle-like isoform X3

GO: NA

KEGG:

id description
K10372 TNNT1; troponin T, slow skeletal muscle

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026911780.2 True 1074 mRNA 0.48 15 65197 78962
XM_026911781.2 False 1058 mRNA 0.48 14 65197 78964

Neighbor

gene id symbol gene type direction distance location
LOC113525292 LOC100528069,LOC108274011,LOC108280241,LOC108427383 coding downstream 45361 18347 ~ 19836 (-)
LOC113525293 LOC100528069,LOC108274011,LOC108280241,LOC108427383 coding downstream 45412 11118 ~ 19785 (-)
LOC113525295 NA coding upstream 37910 116874 ~ 139838 (-)
cpt1cb NA coding upstream 65204 144168 ~ 200392 (-)
si:dkey-16p21.7 si:dkey-16p21.7,LOC108427376,LOC107658484,LOC107548343,LOC108274928,LOC108441159,LOC107598587,LOC107557374 coding upstream 124907 203871 ~ 250572 (-)
prmt1 prmt1,LOC107729532,LOC107658485,LOC107689671,LOC107730737 coding upstream 207077 286041 ~ 292612 (-)
si:ch211-195b15.7 LOC108280346 coding upstream 326962 405926 ~ 416575 (-)
G203016 NA non-coding downstream 12559 50132 ~ 52638 (-)
G203027 NA non-coding upstream 12290 91254 ~ 93136 (-)
G203169 NA non-coding upstream 78914 157878 ~ 160160 (-)
G203173 NA non-coding upstream 96554 175518 ~ 175992 (-)
G203164 NA non-coding upstream 100070 179034 ~ 179371 (-)
G203174 NA non-coding upstream 105976 184940 ~ 187021 (-)
aldh16a1 aldh16a1 other downstream 10922 26642 ~ 54275 (-)
pih1d1 pih1d1 other upstream 1664 80628 ~ 103113 (-)
G203170 NA other upstream 83162 162126 ~ 162584 (-)
G203154 NA other upstream 252577 331541 ~ 333644 (-)
G203254 NA other upstream 407258 486222 ~ 489731 (-)
LOC117598978 NA other upstream 660704 739668 ~ 750458 (-)

Expression


Co-expression Network