LOC113527856


Basic Information

Item Value
gene id LOC113527856
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 21390903 ~ 21402724 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026915990.2
GcctgctatgtgtgtgtgtggtctgagtGTAAAGATCTCCAGCTGGTTTAAAGCTTCAGAGAGAACTGCACTGTGTTCATTTCCCTTCAGTTGGTTTGTGGGCTTCTGGATGTTCTTGCGTCTCTTCTCTGGACTTACTGAGAAAAAATGCAGGACATCTTAGGGATCCTGCTGATGTTCGCAGGAGCTGCCTCGGGTTTGCTGGTTCAGGATCCTGTTGTCTGTAGATTTACTGAGAGTAATCAGTGTTATGTAGCTCTGGGAAAACGACTGCACCTGCAAATAACCATGGAGGATAGGTTTGAGCTAAAGATCATAGACAAGACATCTACCTCTcgtttaattataaattatagaaAAACCCAAAGTAACCCACCAAACCCAAATCCCCCAAGATGGCAGTTtgttaatgataataaaactaTGATACTAACCAGTGCAGAGAGGAGCGACGCTGGAACATACACTTTAAGCACGTTTGATGCAAAGGGGAATTCTAAAGGCGATTATACTCTCCAGCTAAACATTGAAGCTCAGGTGTCCTCAGTGAAATTGTCGTACAGCTGCTTGTTCCCTGAAGTCAGGAAAGTGTACTGTTCTGCTGATGGAGACAACCTCCGTTTCAACTGGACTCCTGAATCAGCCATTCGGTTGGAGAACGAGAACAGCACTCTTGTACTGGAAAAAACACATATTGCCAGTGTCATCTGTCGTGTCGAAAATCACATCAGCAATGACAGCGGTACCATTACACTCGAACAATGTTCTGATTTCACTCTGATTATCCTGAGCTTGGTTTGTGTGCTTCTTATTATACTATCTGTCTTAGCATTCTACATATACAAGAAGAGACAAGGCCTAAGGAACAAAGAAGCCCCTTCTCAGGATGGCACGGAGCTTGTGTATGCGCAGGTCACCCATTTACCCAAGAACAAGACAGAGACAAAACCCAGGATATCCCGAGCTCAGAACAAGGACGTGGAGATCGCCGCAGGGGTCGCTAGTCCCAGCAAGACgaatcagaagaagaaagaggacgAGGTGCAGTATGGCGAGCTGGTGTTTAACGCTCCTGCCCCAAAAAAGAGTGAGATGCCCAAAGGTcaagatgagtgtgtgtactcacagGTCCAGCATGGTCAGTGAGGGACACAATCTCAGCCTGTCTCAGCATGCATCAttaatacagtttatttttatgtatttatttttttgtatccaTTGCTTTGTCGCAAGATCATTCTGGTAGAGGAAGTAGCAGTTGGTGACATTCCACCCATACACACTCATCTCTTACCcaaaagaaaacttcactgaCAGTGAAACTATTTCAATAGCTGATTATGCAATTATGGAATCTTTTCAGGCTGCACAGTAGTACAGTGGTTAGTGTTGCTGTCTTAAGCTCATATACTGTTGgatactgtttgtgtggagttttgcatgttctccctccatccatgtgggtttcctccaggttttcaGGTTTCCTCcgacctcccaaaaacatgccagtaggtagactggctatgctaatttacccctactgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgtgtgtgcgtgtgcaagCGCGCACTGCAGTGGGCTCgaatagactccagatccacctcaACCTTGACCACCATAGAGTGGTTACTCTAGAggaatgcattatttttttttctatttaaatgtaatgctTCAGTTGCCATTTTAATTCCATTCTACTAGAATGAAATAACTAAGTTTTGTTTGCCATGAAACTGTGTATAGTACTGAGTTCagagttagttagttagttagttagttagttagcttagttattttaatgaaaaagtattAACCTTCACATTCATCGTTGATTCTGCTGtcacaacactgcaaaaaaaaattataacaaatcTTTAATGTTTAGAAGTAAGTGCTTAAAATAAGCATAtttgaaatgagtaaatatgtTTAGAATTGCAATTGCAATTGCCAgttgtgttgttttcttttcctacCTGTGAACACGTGTGCCATCAAGATGATCCTTAATCGTAAGTAAGGCTTTTGAGccttttttctttatcatttgTATTGTTAAAACTgatgaagagaaaataaataggAAGTTTCTTTTTGCACTCTTAAGTGTTGAACTTGAGACACAGCTGTGACTTCCTGGGCATCTCACACACTGCTCTTTGTGTGGCTCCATTTCAAAACcaacatttctgcttttctgtttaaaaagtgctgtacataaGAAGTGTCAATTATTTTATGAGGTTGTTTTctaccatttaaaaaatgttccgTGGgtcaaataaatgaacaaaatgtc
>XM_034309845.1
GcctgctatgtgtgtgtgtggtctgagtGTAAAGATCTCCAGCTGGTTTAAAGCTTCAGAGAGAACTGCACTGTGTTCATTTCCCTTCAGTTGGTTTGTGGGCTTCTGGATGTTCTTGCGTCTCTTCTCTGGACTTACTGAGAAAAAATGCAGGACATCTTAGGGATCCTGCTGATGTTCGCAGGAGCTGCCTCGGGTTTGCTGGTTCAGGATCCTGTTGTCTGTAGATTTACTGAGAGTAATCAGTGTTATGTAGCTCTGGGAAAACGACTGCACCTGCAAATAACCATGGAGGATAGGTTTGAGCTAAAGATCATAGACAAGACATCTACCTCTcgtttaattataaattatagaaAAACCCAAAGTAACCCACCAAACCCAAATCCCCCAAGATGGCAGTTtgttaatgataataaaactaTGATACTAACCAGTGCAGAGAGGAGCGACGCTGGAACATACACTTTAAGCACGTTTGATGCAAAGGGGAATTCTAAAGGCGATTATACTCTCCAGCTAAACATTGAAGCTCAGGTGTCCTCAGTGAAATTGTCGTACAGCTGCTTGTTCCCTGAAGTCAGGAAAGTGTACTGTTCTGCTGATGGAGACAACCTCCGTTTCAACTGGACTCCTGAATCAGCCATTCGGTTGGAGAACGAGAACAGCACTCTTGTACTGGAAAAAACACATATTGCCAGTGTCATCTGTCGTGTCGAAAATCACATCAGCAATGACAGCGGTACCATTACACTCGAACAATGTTCTGCATTCTACATATACAAGAAGAGACAAGGCCTAAGGAACAAAGAAGCCCCTTCTCAGGATGGCACGGAGCTTGTGTATGCGCAGGTCACCCATTTACCCAAGAACAAGACAGAGACAAAACCCAGGATATCCCGAGCTCAGAACAAGGACGTGGAGATCGCCGCAGGGGTCGCTAGTCCCAGCAAGACgaatcagaagaagaaagaggacgAGGTGCAGTATGGCGAGCTGGTGTTTAACGCTCCTGCCCCAAAAAAGAGTGAGATGCCCAAAGGTcaagatgagtgtgtgtactcacagGTCCAGCATGGTCAGTGAGGGACACAATCTCAGCCTGTCTCAGCATGCATCAttaatacagtttatttttatgtatttatttttttgtatccaTTGCTTTGTCGCAAGATCATTCTGGTAGAGGAAGTAGCAGTTGGTGACATTCCACCCATACACACTCATCTCTTACCcaaaagaaaacttcactgaCAGTGAAACTATTTCAATAGCTGATTATGCAATTATGGAATCTTTTCAGGCTGCACAGTAGTACAGTGGTTAGTGTTGCTGTCTTAAGCTCATATACTGTTGgatactgtttgtgtggagttttgcatgttctccctccatccatgtgggtttcctccaggttttcaGGTTTCCTCcgacctcccaaaaacatgccagtaggtagactggctatgctaatttacccctactgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgtgtgtgcgtgtgcaagCGCGCACTGCAGTGGGCTCgaatagactccagatccacctcaACCTTGACCACCATAGAGTGGTTACTCTAGAggaatgcattatttttttttctatttaaatgtaatgctTCAGTTGCCATTTTAATTCCATTCTACTAGAATGAAATAACTAAGTTTTGTTTGCCATGAAACTGTGTATAGTACTGAGTTCagagttagttagttagttagttagttagttagcttagttattttaatgaaaaagtattAACCTTCACATTCATCGTTGATTCTGCTGtcacaacactgcaaaaaaaaattataacaaatcTTTAATGTTTAGAAGTAAGTGCTTAAAATAAGCATAtttgaaatgagtaaatatgtTTAGAATTGCAATTGCAATTGCCAgttgtgttgttttcttttcctacCTGTGAACACGTGTGCCATCAAGATGATCCTTAATCGTAAGTAAGGCTTTTGAGccttttttctttatcatttgTATTGTTAAAACTgatgaagagaaaataaataggAAGTTTCTTTTTGCACTCTTAAGTGTTGAACTTGAGACACAGCTGTGACTTCCTGGGCATCTCACACACTGCTCTTTGTGTGGCTCCATTTCAAAACcaacatttctgcttttctgtttaaaaagtgctgtacataaGAAGTGTCAATTATTTTATGAGGTTGTTTTctaccatttaaaaaatgttccgTGGgtcaaataaatgaacaaaatgtc

Function

GO:

id name namespace
GO:0050900 leukocyte migration biological_process
GO:0002376 immune system process biological_process
GO:0030595 leukocyte chemotaxis biological_process
GO:0060326 cell chemotaxis biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026915990.2 True 2338 mRNA 0.41 6 21390903 21402724
XM_034309845.1 False 2278 mRNA 0.41 6 21390903 21402724

Neighbor

gene id symbol gene type direction distance location
LOC113527892 NA coding upstream 3816 21381780 ~ 21387087 (+)
sec24b sec24b,LOC108434542,LOC107596339,LOC107731363 coding upstream 62149 21301643 ~ 21328754 (+)
LOC113527948 NA coding upstream 97109 21288480 ~ 21293794 (+)
f8 LOC108279904 coding upstream 164055 21206459 ~ 21226848 (+)
tlr1 LOC108258270 coding upstream 206053 21181413 ~ 21184850 (+)
LOC117598821 NA coding downstream 2616 21405340 ~ 21430458 (+)
LOC117598820 LOC108280985,LOC108277545 coding downstream 51394 21454118 ~ 21480442 (+)
LOC113540583 NA coding downstream 139266 21541990 ~ 21546092 (+)
rest rest coding downstream 217907 21620631 ~ 21631906 (+)
LOC117598747 NA coding downstream 243128 21645852 ~ 21646623 (+)
G214798 NA non-coding upstream 22675 21368024 ~ 21368228 (+)
LOC117598756 NA non-coding upstream 31844 21356850 ~ 21359059 (+)
G214753 NA non-coding upstream 146118 21198542 ~ 21244785 (+)
G214731 NA non-coding upstream 204600 21185266 ~ 21186303 (+)
G214723 NA non-coding upstream 227599 21162900 ~ 21163304 (+)
G214800 NA non-coding downstream 3649 21406373 ~ 21464629 (+)
LOC117598826 LOC108277545,LOC108280981,LOC108280985,LOC108277574,LOC108280967 non-coding downstream 11738 21414462 ~ 21416513 (+)
G214802 NA non-coding downstream 24250 21426974 ~ 21448404 (+)
G214804 NA non-coding downstream 45269 21447993 ~ 21466726 (+)
G214807 NA non-coding downstream 71909 21474633 ~ 21474963 (+)
hopx hopx other upstream 41817 21340416 ~ 21349086 (+)
nudt6 nudt6 other upstream 366816 21011774 ~ 21024087 (+)
LOC113528520 znf518b other upstream 1217551 20022509 ~ 20173352 (+)
G214015 lyar other upstream 1409523 19978314 ~ 19981380 (+)
LOC113528304 evc2 other upstream 1437617 19933824 ~ 19953286 (+)
LOC113540568 LOC108280981,LOC108280985,LOC108277574,LOC108277545,LOC108280967 other downstream 79298 21482022 ~ 21513040 (+)
LOC113540569 LOC108280981,LOC108280985,LOC108277545,LOC108277574,LOC108280967 other downstream 111849 21514573 ~ 21565376 (+)
G215015 LOC108275153 other downstream 243356 21646080 ~ 21649152 (+)
G215022 NA other downstream 260360 21663084 ~ 22000809 (+)
G215010 LOC108275153 other downstream 261834 21664558 ~ 21711769 (+)

Expression


Co-expression Network