aimp2 (aimp2,LOC106601790)


Basic Information

Item Value
gene id aimp2
gene name aimp2,LOC106601790
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 10381193 ~ 10384307 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026916002.2
AGTGACGTCACTTCCACGCGGCCTCTTTCCGCACGAGCTCGGTGCTGCACGGGTAGTAGGGAAGTCGACCAAATTGAATAGCATTAGTTCTCTCTCGGATTgtgtgcatatttatttttctggagTCAGACATCATGCCCATGTACCAGGTAAAGCCCACGAGCCAGGGTGACATAAAGATTGATTTGCCAACGTGCATGTACAAGTTACCGAATATCCACGCGCAGCCCGGAAGCAGCTGCGCCGAATATGCGCTACAGAATGGGGAGGTGGATCCTGCCCTTAAAGCTCTGGAGGCTCGCCAGGACGAGATCATGCGCAAGCTCTATGAGCTAAAAGCAGCAGTGGATGGCCTGGCGAAGACAGTCACTACTCCAGATGCTGACATGGATGTTACAACTCTGACACAGACCACTACAGTGTCTGCCTTCACGGGCACGGCTGATCTGGACGCTCTTCTTGGAAAGgaCCCAGGTGCTCTGAGGGACATAGTAATCAATGCCAACCCGGCCAGTCCACCACTCTCCCTGCTGGTGCTGCACGGGCTTCTGTGCCAGAGGTACCGTGTGCTTTCCTCTGTGCATGTGCACTCATCCGTCTCCAGTGTGCCTCCTCAGCTGCTCTCATGCTTAGGGCCACGCCATACTGAGAGCTATACCCGCCAATGCTTCCAGCTGGGTTTTACACTCATATGGAAAGACGTGCCAAAAGTGCAGATGAAGTTCAGCACGCAGAGTATGTGCCCCATTGAGGGCGAGGCCAACGTGGCACgcttcctctttcggctgctggGCGCCGAGCCGAAGGACCCGATTGTTGCCACACAGTTGGACAGCTGGGTGGATACGGCCTTCTTCCAGCTGGCAGAGGGGGGCAGTAAGGAGCGTGCGACTGTGCTGCGTTCACTCAACAGCGCTCTGGGCCGCTCGATATGGCTGCTGGGCCAAGAGCCCTCGCTGGCCGACATCGTGTGCGCGTGCTGCATCCTTCGAGACGGCCAGGCCTTGTCCACTCCTGCCAACGTGCAGCGCTGGCTCCAGGCATGCAGAAACCTTGAGCACTTCCACTGCATCGCCCCTTTGCTGCAGTGAGTGAGTCTCCCAGAATGGGttaagataaagataaagacgAGACATATATACAAAGTGTAAGTAAAATGAAATAGAAGAAATGtcatattattttacacagaatttcAGATAAGCTAAAGGGGCCTCGGTGATAGTGATAGAGCTCAGATCTGCCCAGTTATTACCTTTACCTATAACTCACCTCAGGGCAGGTGGGCCTCAGATGAAAGCCTGTCCATACACAGTTCTCTATGAATATTTAGGTATTCTGATCATTATAATGTTAAACTATCTATAACTGAATCCAGACCACTGTCATATTCACAGTGCTCATAGAGCAAAGAACTGGCGTTTAAAATAGTGGATTCTGGGTATGAATGCTGTCTCCCTCCACATTGTGCCTAACATgatactgtagtgtgtgtactgtgttaATGCTGAATATTACTTGTGTTGATGAGCAGTTCAGATGTGAAGCAGAGGACCTACTGGAAGTGTATGAAACATATGACAGATACTTTGTAACGTCTTTTTCTTAAAGCCTATTAAAAATTTTCACATTGGGTCAAA
>XM_026916003.2
AAGTGACGTCACTTCCACGCGGCCTCTTTCCGCACGAGCTCGGTGCTGCACGGGTAGTAGGGAAGTCGACCAAATTGAATAGCATTAGTTCTCTCTCGGATTgtgtgcatatttatttttctggagTCAGACATCATGCCCATGTACCAGAATGGGGAGGTGGATCCTGCCCTTAAAGCTCTGGAGGCTCGCCAGGACGAGATCATGCGCAAGCTCTATGAGCTAAAAGCAGCAGTGGATGGCCTGGCGAAGACAGTCACTACTCCAGATGCTGACATGGATGTTACAACTCTGACACAGACCACTACAGTGTCTGCCTTCACGGGCACGGCTGATCTGGACGCTCTTCTTGGAAAGgaCCCAGGTGCTCTGAGGGACATAGTAATCAATGCCAACCCGGCCAGTCCACCACTCTCCCTGCTGGTGCTGCACGGGCTTCTGTGCCAGAGGTACCGTGTGCTTTCCTCTGTGCATGTGCACTCATCCGTCTCCAGTGTGCCTCCTCAGCTGCTCTCATGCTTAGGGCCACGCCATACTGAGAGCTATACCCGCCAATGCTTCCAGCTGGGTTTTACACTCATATGGAAAGACGTGCCAAAAGTGCAGATGAAGTTCAGCACGCAGAGTATGTGCCCCATTGAGGGCGAGGCCAACGTGGCACgcttcctctttcggctgctggGCGCCGAGCCGAAGGACCCGATTGTTGCCACACAGTTGGACAGCTGGGTGGATACGGCCTTCTTCCAGCTGGCAGAGGGGGGCAGTAAGGAGCGTGCGACTGTGCTGCGTTCACTCAACAGCGCTCTGGGCCGCTCGATATGGCTGCTGGGCCAAGAGCCCTCGCTGGCCGACATCGTGTGCGCGTGCTGCATCCTTCGAGACGGCCAGGCCTTGTCCACTCCTGCCAACGTGCAGCGCTGGCTCCAGGCATGCAGAAACCTTGAGCACTTCCACTGCATCGCCCCTTTGCTGCAGTGAGTGAGTCTCCCAGAATGGGttaagataaagataaagacgAGACATATATACAAAGTGTAAGTAAAATGAAATAGAAGAAATGtcatattattttacacagaatttcAGATAAGCTAAAGGGGCCTCGGTGATAGTGATAGAGCTCAGATCTGCCCAGTTATTACCTTTACCTATAACTCACCTCAGGGCAGGTGGGCCTCAGATGAAAGCCTGTCCATACACAGTTCTCTATGAATATTTAGGTATTCTGATCATTATAATGTTAAACTATCTATAACTGAATCCAGACCACTGTCATATTCACAGTGCTCATAGAGCAAAGAACTGGCGTTTAAAATAGTGGATTCTGGGTATGAATGCTGTCTCCCTCCACATTGTGCCTAACATgatactgtagtgtgtgtactgtgttaATGCTGAATATTACTTGTGTTGATGAGCAGTTCAGATGTGAAGCAGAGGACCTACTGGAAGTGTATGAAACATATGACAGATACTTTGTAACGTCTTTTTCTTAAAGCCTATTAAAAATTTTCACATTGGGTCAAA

Function

symbol description
aimp2 Predicted to be involved in positive regulation of aminoacyl-tRNA ligase activity. Predicted to act upstream of or within apoptotic process and cell differentiation. Predicted to be located in cytosol and nucleus. Predicted to be part of aminoacyl-tRNA synthetase multienzyme complex. Is expressed in several structures, including alar plate midbrain region; head; immature eye; midbrain; and musculature system. Human ortholog(s) of this gene implicated in hypomyelinating leukodystrophy. Orthologous to human AIMP2 (aminoacyl tRNA synthetase complex interacting multifunctional protein 2).

NR:

description
LOW QUALITY PROTEIN: aminoacyl tRNA synthase complex-interacting multifunctional protein 2

GO: NA

KEGG:

id description
K15438 AIMP2; aminoacyl tRNA synthase complex-interacting multifunctional protein 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026916002.2 True 1640 mRNA 0.50 4 10381193 10384306
XM_026916003.2 False 1530 mRNA 0.50 4 10381193 10384307

Neighbor

gene id symbol gene type direction distance location
cacng4b cacng4b,LOC108259704,LOC107691234,LOC107565862,LOC108412836,LOC107713946,LOC107548710 coding downstream 8138 10360186 ~ 10373055 (-)
cacng1b cacng1,cacng1b,LOC108412846,LOC107666105,LOC107724731,LOC107691235 coding downstream 25720 10345265 ~ 10355473 (-)
pitpnc1a LOC108274028,LOC108412868,LOC107691236,LOC107665814,LOC107752702,LOC106903613,LOC107743029 coding downstream 85070 10230636 ~ 10296123 (-)
dxo dxo,LOC106601672,LOC106606733,LOC107666098,LOC107743041,LOC107691245,LOC107752708 coding downstream 151794 10223395 ~ 10229399 (-)
anks4b anks4b coding downstream 167782 10209348 ~ 10213411 (-)
trnac-gca_22 NA coding upstream 742 10385049 ~ 10385120 (-)
pvalb8 prvu,pvalb8,LOC103030409,LOC108412252,LOC107691229,LOC107548708,LOC103141687,LOC103141679,LOC103469263 coding upstream 19473 10403780 ~ 10407080 (-)
pvalb4 LOC100305042,LOC107724737,LOC108412813,LOC107665849,LOC107548706,LOC103030720 coding upstream 28698 10413005 ~ 10414768 (-)
LOC113527991 LOC108279005,LOC103031037,LOC108412819,LOC108273406,LOC107665844 coding upstream 31594 10415901 ~ 10417915 (-)
pvalb5 LOC108278987,LOC108412247 coding upstream 35733 10420040 ~ 10427228 (-)
G208951 NA non-coding downstream 38971 10341911 ~ 10342222 (-)
G208771 NA non-coding downstream 90308 10221710 ~ 10290885 (-)
G208758 NA non-coding downstream 193941 10187036 ~ 10187252 (-)
G208649 NA non-coding downstream 314837 10063977 ~ 10066356 (-)
G208613 msl1 non-coding downstream 463664 9914907 ~ 9917529 (-)
G208964 lmtk2 non-coding upstream 63429 10447736 ~ 10450540 (-)
G208980 NA non-coding upstream 134035 10518342 ~ 10518947 (-)
G208998 NA non-coding upstream 249228 10633535 ~ 10634150 (-)
G209189 NA non-coding upstream 704706 11089013 ~ 11144984 (-)
LOC113528410 NA non-coding upstream 834352 11218659 ~ 11221378 (-)
hoxb8a hoxb8a,LOC108278530,LOC108413053,LOC103044850,LOC107582957,LOC107662386,LOC107585089 other downstream 648627 9729851 ~ 9732566 (-)
copz2 copz2,LOC108260256,LOC108413159,LOC107740614,LOC107662379,LOC107710054,LOC107585036,LOC107687783,LOC105013247,LOC108246742,LOC106527321,LOC106912034 other downstream 906715 9464331 ~ 9474478 (-)
prr15la LOC108273894,LOC108412372 other downstream 961609 9409804 ~ 9419584 (-)
dnal4a dnal4,LOC108261343,LOC108412416,LOC108436609,LOC106591471 other downstream 1177553 9196496 ~ 9203640 (-)
LOC113527952 LOC108260010,LOC108274064 other downstream 1238322 9112966 ~ 9142871 (-)
tecpr1b LOC108276900 other upstream 66417 10450724 ~ 10470518 (-)
hmox1a hmox1,LOC108432221 other upstream 1257850 11642157 ~ 11647997 (-)
zgc:162612 foxd1,LOC108278341,LOC107757501 other upstream 1315542 11699849 ~ 11701172 (-)
LOC113528332 hs3st6,LOC102795972 other upstream 1913469 12297776 ~ 12315498 (-)
msrb1a msrb1 other upstream 1949547 12333854 ~ 12339269 (-)

Expression


Co-expression Network