farsa (farsa,LOC106601350)


Basic Information

Item Value
gene id farsa
gene name farsa,LOC106601350
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 13065751 ~ 13078673 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026916004.2
AGTGTGCGCCGTTGACGTCACATCCGGTCTCTCCCTCTCAGACAAGTAGCAGAGGTTTTAAGCATGGCGGACGCCGGTGTGTTAGAATCGCTCTTGCAGCTGGTGGAAAAGGTTGACGGTGGTACTGACAGCCAGGATGTGGCGAGTAGTCTCTCAGTGGACCACCAGGTCGTTGTTGGGGCTGTAAAGAGTCTCCAGTCTCTCGGAGAGGTGATTGATGCAGAGCAGCGCTCATCCAAGCACTGGGAACTGACCGGAGAGGGATGTGAGATAGCCGAGCAGGGAAGCCATGAAGCCAGGGTGTTTAACGCCATCCCCGAAGAGGGAATACCTCAGAGCCAGCTCATGAAACTGGCCAGTGGGAAAGTAGGCTTCAGCAAGGCCATGTCCAACAAATGGATCCGTGTGGATAAAGGTCACGAGGGAGGCCCCAGAGTGTTCAGAATGGTGGAGAGCATCGAGGACACGGTGAGAGAGAAACTGCGGCTAGTGCAGAAAGGCCAGTCATCTCAActggaggagaaagagaagaacgAACTGAAGAAACGGAAACTGCTCACAGAGGTGACAGTTAAGTCCTACTGGATCACCAAAGGCAGCAACTTCAGCACCACCATCACCAAACAGGAGACTGAACTCACTCCAGAGATGATTGCTAGtGGAACTTGGAAGGAGAAGAAGTTCAAGCCCTATAACTTTGAGGCAATGGGTGTTGCTCCAGACTGTGGCCATTTGCACCCTCTGATGAAGGTGCGGACGCAGTTCAGACAGATCTTCCTGGAGATGGGGTTCACAGAGATGCCCACCAATAACTTTATCGAGAGCTCTTTCTGGAACTTTGACTCTCTGTTCCAGCCCCAGCAGCACCCAGCTAGAGATCAGCATGACACCTTCTTCCTGTCTGatcCAGCAATGGCTCATAAATTTCCTCAAGACTACCTCGAAAGGGTGAGAAAGGTCCATTCTGAGGGAGGATATGGATCACAAGGGTACAAGTACGACTGGAAGATTGAGGAAGCTCAGAAAAACATCCTCCGGACACACACGACAGCCGTGAGCGCACGCATGCTCTACAAACTAGCCCAGCAGGAGAAGTTCACCCCAGTGAAGTACTTCTCTATAGACCGTGTGTTTCGCAACGAGACGCTGGACGCCACTCACCTGGCTGAGTTCCATCAGATCGAGGGTGTGGTGGCTGATTATGGCCTGACGCTGGGAGACCTGATGGGGGTTCTGCATCAGTTCTTCACCAAACTGGgaaTCACTAAATTGCGTTTCAAGCCAGCTTACAACCCTTACACTGAGCCCAGCATGGAGGTGTTCAGCTATCATGAAGGGCTGAAGAAGTGGGTAGAGGTTGGGAACTCTGGGGTCTTCAGACCTGAGATGCTGCTGCCTATGGGTTTACCAGAGGACGTGTCTGTCATCGCCTGGGGGCTGTCTTTGGAGCGGCCCACCATGATCAAGTACGGCATCAACAACATCCGTGAGCTTGTGGGGCACAAAGTAAACCTGCAGATGGTGTACGACAGCCCAGTGTGTCGCCTGGACTCTTAAACTGCACTCAGGAACAATCACAGGAAAGAAAAGCCTGTCTCTTTAGAAGCCTCTCATACGCCAGTCTCATGGATTCATTCAAGCATCCTGGATCAGTCCACATTGCCCTGTGTAAATCACGCCAGTGACACTCTGACATACACTCTGCTGGGGTCCACTGTCAGTATCTCAATGATTAAGAGACTAAGTTGGGCTGACACCTTTGAcggactggaaaaaaaattatgacatatTTTAGGTGAAGCTGCCGGCTATAAATTACGTTTATATTATCCCCATACAGATGCACTACTCCAATCAAATCTGCATGCACTCAGAGCTAATGTTAGTACTAGTTAATTAGCATTCTGACTCAGCCCTACTGGTTCTGACTGTAAGCAGTTGATCTGTATGTCTTTTATTACTGACTTAGTGCTTGTATTAAATGAAGTACCATTTCTTCTGGCCCATGTCTTGCAAAAATAATGCTGATACTCTGTTACCTTCACAACTCACAATGCAAATACACCAGCTTAAAGGGAAGCATTCATGttgtaaaaatgataaattaaacatgtttaaaaattgaA

Function

symbol description
farsa Predicted to enable phenylalanine-tRNA ligase activity. Predicted to be involved in phenylalanyl-tRNA aminoacylation and protein heterotetramerization. Predicted to act upstream of or within tRNA aminoacylation and translation. Predicted to be part of phenylalanine-tRNA ligase complex. Predicted to be active in cytosol. Orthologous to human FARSA (phenylalanyl-tRNA synthetase subunit alpha).

NR:

description
PREDICTED: phenylalanine--tRNA ligase alpha subunit

GO:

id name namespace
GO:0006432 phenylalanyl-tRNA aminoacylation biological_process
GO:0005737 cytoplasm cellular_component
GO:0000049 tRNA binding molecular_function
GO:0005524 ATP binding molecular_function
GO:0004826 phenylalanine-tRNA ligase activity molecular_function

KEGG:

id description
K01889 FARSA, pheS; phenylalanyl-tRNA synthetase alpha chain

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026916004.2 True 2126 mRNA 0.49 13 13065751 13078673

Neighbor

gene id symbol gene type direction distance location
ptger1b LOC108257984 coding upstream 23445 13028820 ~ 13042306 (+)
si:ch211-194b1.1 LOC108256185,LOC108236112,LOC103393718,LOC105929962 coding upstream 101977 12939770 ~ 12963774 (+)
pglyrp6 pglyrp2 coding upstream 130729 12930220 ~ 12935022 (+)
ddx5 ddx5,LOC108257112,LOC108432077,LOC107583258,LOC103024726,LOC107723600,LOC107602339,LOC105013158,LOC107748799,LOC107672127 coding upstream 136999 12922324 ~ 12928752 (+)
smurf2 smurf2,LOC108254810,LOC108432078,LOC107748797,LOC107695141,LOC107723598 coding upstream 144821 12873265 ~ 12920930 (+)
syce2 LOC108258127 coding downstream 4393 13083066 ~ 13094680 (+)
LOC113528074 LOC108256459 coding downstream 31360 13110033 ~ 13142377 (+)
LOC113528311 rgl3,LOC108432062,LOC107653475,LOC107718589,LOC107563227 coding downstream 68630 13147303 ~ 13169715 (+)
plppr2a plppr2a,LOC108274416,LOC108440982,LOC107550254,LOC107715659,LOC107695724,LOC107718583,LOC107661668 coding downstream 195951 13274624 ~ 13313578 (+)
tlcd4b tmem56b,LOC108258030,LOC108440983,LOC102303032,LOC107376175,LOC107718582,LOC107661664,LOC107715658,LOC107695723,LOC107550253 coding downstream 266321 13344994 ~ 13363702 (+)
G210384 NA non-coding upstream 19918 13044990 ~ 13045833 (+)
G210209 NA non-coding upstream 244467 12821076 ~ 12821284 (+)
G210160 NA non-coding upstream 285615 12779249 ~ 12780136 (+)
G210086 NA non-coding upstream 517248 12546433 ~ 12548503 (+)
G209945 NA non-coding upstream 684765 12378946 ~ 12380986 (+)
G210532 NA non-coding downstream 287011 13365684 ~ 13365893 (+)
G210655 NA non-coding downstream 381306 13459979 ~ 13460490 (+)
G210698 NA non-coding downstream 583501 13662174 ~ 13663501 (+)
G210694 LOC108276282 non-coding downstream 586843 13665516 ~ 13669551 (+)
G210719 NA non-coding downstream 616817 13695490 ~ 13695799 (+)
ndufb10 ndufb10 other upstream 691379 12367566 ~ 12374372 (+)
arhgap17b LOC108279379,LOC108432202 other upstream 875681 12158703 ~ 12190070 (+)
LOC113528416 LOC108275780 other upstream 925380 12135269 ~ 12140371 (+)
tbc1d16 tbc1d16,LOC107559246,LOC107689993,LOC107670685,LOC107562324 other upstream 979693 12049407 ~ 12086058 (+)
luc7l3 luc7l3,LOC107674472,LOC107726809,LOC107654661 other upstream 1487928 11567119 ~ 11577823 (+)
znf653 znf653,LOC104961106,LOC107553636,LOC103393609 other downstream 356708 13435381 ~ 13445686 (+)
zgc:158403 zgc:158403,LOC108258290,LOC108441004,LOC107718630,LOC107553678,LOC107661656,LOC107695678 other downstream 385412 13464085 ~ 13493942 (+)
socs3a socs3 other downstream 1540531 14619204 ~ 14621788 (+)
LOC117598752 NA other downstream 1909413 14988086 ~ 14991450 (+)
G211913 NA other downstream 2839544 15918217 ~ 15968759 (+)

Expression


Co-expression Network