ush1ga (ush1g,ush1ga,LOC107556601,LOC107698769,LOC107568596,LOC107664446)


Basic Information

Item Value
gene id ush1ga
gene name ush1g,ush1ga,LOC107556601,LOC107698769,LOC107568596,LOC107664446
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 14912189 ~ 14920677 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026916008.2
GGAAACCGTCGCGAGCGTTCCCAGGCCGCTCGGTGCACACGGCCTTAGCGAAAGACGCTTGCCGTCCAGTGCCGATGACTCCCGAAGACTGGGAGTAAAAACTCAAGCATAATGGAGGCCGAAGTGCGAGAGCAACATGAATGACAAGTACCACAGGGCAGCGCGAGATGGCTACCTGgacctgctgaaagaggccacgcGGAAGGACCTGAACGCGCCGGATGAAGATGGCATGACACCGACGCTCTGGGCCGCGTACCACGGCAACCTGGACGCGCTCAGGCTCATCGTGGCCAGAGGAGGGAATCCTGATAAGTGTGATATATGGGGGAACACGCCGCTCCACCTGGCCGCTTCCAATGGCCATCTCAACTGCCTGTCCTTCTTGGTGTCCTTTGGTGCAAACACATGGTGTTTAGACAATGACTACCACACGCCTCTGGACATGGCTGCCACCAAGAACCACATGGACTGTGTACGCTACCTGGACTCCATTGCTGCCAAGCAGACAGCTCTCAACCCCAAGCTGGTGGCCAAGTTGAAAGACAGAGCCTTCCGTGATGCCGAACGTCGCATCAAAGACTGTGTCAAGATGCAGCGCAAGCACCACCGCCGCATGGAGCGCAAGTTCCAGAAGGAAGCCACAGATGCTTCGCTTTCTGATGCCATGAGCTTCTCCAGCTACACCAGCAGCACTTTTAGCCGCAAGCTGCACCCCTTCAACACTGCCACCAGTGTGCCATACTCACAGGCTACCCTCCATGCCACAGCCAGAGGCAAAACCAAGATCCAGAAGAAGTTGGAAAAGAAGAAGCAGGGTGATGGGACCTTCAAGATCTATGAGGATGGAAGGAAGAGTGTGCGCTCTCTTTCTGGTCTACAGCTGGGTAATGATGTCATGTTCCTAAAGCAGGGTACCTACGTAAACCCAAAAGACCGTGGTCGGCGAAATGTCCGTGATATGTTCCCACGGGACAATGAGGATGCCATCTCGCGTGCCATCAGCGAGCCGGACCTGCATGGGGCAGACATGGACCACTCAGAGATCAGCACTGACTCGGGCCATGACTCGCTTTTCAACCGGCCAGGCCTGGGTACCATGGTCTTCCGGCGGAACTATGTGAGCGGGGGACTCTTTGACATAGGCTCTCGTGATGAGGGCAGCATGGCCGGCAGTGCAAGGGCACCAAATGTCCGTCTGCGCAGCCGTCTTCAGCGATCTCCCAGCGTAGATGAGGATAGTATCGGCAGTGCTCGAAGCCTCCAGGCAAGGAACATGGAGGAGCTTCCCTGGGATGAGGTGGAATTAGGACTGGATGATGACGATGAGCCAGAGAGTAGTCCACTTGAGGTATTCCTGGCTGCACAGTGCATGAACGAGTTCATCCCTATTTTTAAGCGAGAGAAGATTGACCTGGATGCACTGCTGCTGTGCTCTGACAGTGACCTCAAAAGCATCCACATTCCCTTGGGACCTCGTAAAAAGATCATTGATGCGTGCAAGAGACGCTTGGACACCATTGAGGATCCCGACAGCATAGAAGACACAGAGTTGTAA
>XM_026916009.2
GGAAACCGTCGCGAGCGTTCCCAGGCCGCTCGGTGCACACGGCCTTAGCGAAAGACGCTTGCCGTCCAGTGCCGATGACTCCCGAAGACTGGGAGTAAAAACTCAAGCATAATGGAGGCCGAAGTGCGAGAGCAACATGAATGACAAGTACCACAGGGCAGCGCGAGATGGCTACCTGgacctgctgaaagaggccacgcGGAAGGACCTGAACGCGCCGGATGAAGATGGCATGACACCGACGCTCTGGGCCGCGTACCACGGCAACCTGGACGCGCTCAGGCTCATCGTGGCCAGAGGAGGGAATCCTGATAAGTGTGATATATGGGGGAACACGCCGCTCCACCTGGCCGCTTCCAATGGCCATCTCAACTGCCTGTCCTTCTTGGTGTCCTTTGGTGCAAACACATGGTGTTTAGACAATGACTACCACACGCCTCTGGACATGGCTGCCACCAAGAACCACATGGACTGTGTACGCTACCTGGACTCCATTGCTGCCAAGCAGACAGCTCTCAACCCCAAGCTGGTGGCCAAGTTGAAAGACAGAGCCTTCCGTGATGCCGAACGTCGCATCAAAGACTGTGTCAAGATGCAGCGCAAGCACCACCGCCGCATGGAGCGCAAGTTCCAGAAGGAAGCCACAGATGCTTCGCTTTCTGATGCCATGAGCTTCTCCAGCTACACCAGCAGCACTTTTAGCCGCAAGCTGCACCCCTTCAACACTGCCACCAGTGTGCCATACTCACAGGCTACCCTCCATGCCACAGCCAGAGGCAAAACCAAGATCCAGAAGAAGTTGGAAAAGAAGAAGCAGGGTGATGGGACCTTCAAGATCTATGAGGATGGAAGGAAGAGTGTGCGCTCTCTTTCTGGTCTACAGCTGGGTAATGATGTCATGTTCCTAAAGCAGGGTACCTACGTAAACCCAAAAGACCGTGGTCGGCGAAATGTCCGTGATATGTTCCCACGGGACAATGAGGATGCCATCTCGCGTGCCATCAGCGAGCCGGACCTGCATGGGGCAGACATGGACCACTCAGAGATCAGCACTGACTCGGGCCATGACTCGCTTTTCAACCGGCCAGGCCTGGGTACCATGGTCTTCCGGCGGAACTATGTGAGCGGGGGACTCTTTGACATAGGCTCTCGTGATGAGGGCAGCATGGCCGGCAGTGCAAGGGCACCAAATGTCCGTCTGCGCAGCCGTCTTCAGCGATCTCCCAGCGTAGATGAGGATAGTATCGGCAGTGCTCGAAGCCTCCAGGCAAGGAACATGGAGGAGCTTCCCTGGGATGAGGTGGAATTAGGACTGGATGATGACGATGAGCCAGAGAGTAGTCCACTTGAGGTATTCCTGGCTGCACAGTGCATGAACGAGTTCATCCCTATTTTTAAGCGAGAGAAGATTGACCTGGATGCACTGCTGCTGTGCTCTGACAGTGACCTCAAAAGCATCCACATTCCCTTGGGACCTCGTAAAAAGATCATTGATGCGTGCAAGAGACGCTTGGACACCATTGAGGATCCCGACAGCATAGAAGACACAGAGTTATAGCACAAAGGACTTGTTACTCTGTGATTTTGGCCATACCGATGGTACGTCGCAATTCACGTGCAACAGGACAGAAAGACGCTCACGCTGAACGGAAGTGTAACCCTTGTGTGGATTTCAAACAAACAATGGTGCATGTCTCATTACCATAGGAATAAATTTTGAATATGACAATAATACCTCCTTGACTGGCACACACAATGAAGCATGCAGGCCAGCAGTAACAGCTGAATCAAGCTGAGGTTCCATGATTGCCATACATAACAGTAAAAATCCTGCTGAAATCCCTGATGAAGTCAGACCCAATCAGCATCATTCTCATTATGTCTGCCCCTGTGGGGCATGAGTCTTAGTGCCTGTGCTTCCAGTGCATGCACATATCTCTGTTAATTGTAATTTCATGCATGATGTATTGTATTATAAGATATTTTTATGACAAACTCAGAAGATTATGCTGAATATGAGGCATGCATAGGCAGATTTGAAAAGCTTGGGTTTCAAATCCAGGAACTTTTTACACACTGCCTGTCAAACACAGATTATAGGTCGCCAATATACATGGCAACAAATGTGGGAACCCTGTCTATACAGGTCAGTGAATGCCTGAACTTTTTGACCTCCAttagtttgtttacatttgtcAAGCCATACTTATGTTAAAGATTTGGGGCATAGGTATTTTTGGTGGTACATAAATCGTACTTCTTGctgatttctgtttttctctttgttttttgtttttttttcactcatgcCATATTGCTACAGAGAAATTTTCTTTCAACATGCTATTAATCTCACATAAACCTATGTATATTTGGTATACAATACATGTATAGATTTCAGTACATTCCAACCCAAATAGTATGTGCTATTTCTTGTACATAACTtttgttcatgtgttttatataatttcataaaATGTAGCAATAAAAGAGGCAAACTAGCACTGAAAATCCATgaaattttgtattatttttatggGCATACTTGAAGACAATAAACTTGTAATATGGCTGTTTCAGTGAACAGTTTTGTAAGAGTAGCTCATGTAGAGTTTTTATATGTcagaaaataacaaaaccaTAATGGAATAAACACTCTatacatttaaa

Function

symbol description
ush1ga Acts upstream of or within auditory receptor cell morphogenesis. Is expressed in hair cell anterior macula. Human ortholog(s) of this gene implicated in Usher syndrome type 1G. Orthologous to human USH1G (USH1 protein network component sans).
ush1g Enables identical protein binding activity and spectrin binding activity. Involved in several processes, including equilibrioception; photoreceptor cell maintenance; and sensory perception of sound. Predicted to be located in actin cytoskeleton and cytoplasm. Implicated in Usher syndrome type 1G.

NR:

description
PREDICTED: Usher syndrome type-1G protein homolog

GO: NA

KEGG:

id description
K21878 USH1G; Usher syndrome type-1G protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026916008.2 False 1558 mRNA 0.55 3 14912189 14919361
XM_026916009.2 True 2670 mRNA 0.47 4 14912189 14920677

Neighbor

gene id symbol gene type direction distance location
hid1a hid1,LOC107710705,LOC107698779 coding upstream 12457 14878966 ~ 14899732 (+)
cyth1a cyth1,cyth1a,LOC106920077,LOC108277039,LOC107552117,LOC103392816,LOC104925066 coding upstream 311182 14534573 ~ 14601007 (+)
usp36 usp36,LOC107717487,LOC104948677 coding upstream 384660 14501308 ~ 14527529 (+)
timp2b LOC108277022 coding upstream 412620 14491388 ~ 14499569 (+)
LOC113527904 lgals3bp coding upstream 433223 14476246 ~ 14478966 (+)
LOC113528525 LOC108260868 coding downstream 6876 14927553 ~ 14932006 (+)
zgc:112148 tvp23b,LOC105899270,LOC108437154 coding downstream 14560 14935237 ~ 14941094 (+)
stk19 stk19 coding downstream 53899 14974576 ~ 14979006 (+)
cyth3b cyth3,LOC108258062,LOC108437157,LOC107556600,LOC101486233,LOC103143117,LOC107664323,LOC107571178 coding downstream 80193 15000870 ~ 15037047 (+)
cep112 cep112 coding downstream 287429 15208106 ~ 15342947 (+)
G211287 NA non-coding upstream 11883 14899776 ~ 14900306 (+)
G211247 NA non-coding upstream 67627 14844422 ~ 14844562 (+)
LOC113527943 NA non-coding upstream 67817 14838290 ~ 14844372 (+)
G211208 NA non-coding upstream 197314 14714671 ~ 14714875 (+)
G211117 NA non-coding upstream 219430 14604717 ~ 14692759 (+)
G211338 NA non-coding downstream 89465 15010142 ~ 15010651 (+)
LOC117598819 NA non-coding downstream 282845 15203522 ~ 15204658 (+)
G211540 NA non-coding downstream 548872 15469549 ~ 15471704 (+)
G211543 NA non-coding downstream 565860 15486537 ~ 15488982 (+)
G211838 NA non-coding downstream 785072 15705749 ~ 15706001 (+)
socs3a socs3 other upstream 290401 14619204 ~ 14621788 (+)
zgc:158403 zgc:158403,LOC108258290,LOC108441004,LOC107718630,LOC107553678,LOC107661656,LOC107695678 other upstream 1418247 13464085 ~ 13493942 (+)
znf653 znf653,LOC104961106,LOC107553636,LOC103393609 other upstream 1466503 13435381 ~ 13445686 (+)
ndufb10 ndufb10 other upstream 2537817 12367566 ~ 12374372 (+)
arhgap17b LOC108279379,LOC108432202 other upstream 2722119 12158703 ~ 12190070 (+)
LOC117598752 NA other downstream 67409 14988086 ~ 14991450 (+)
G211913 NA other downstream 997540 15918217 ~ 15968759 (+)
LOC113527983 sstr5,sstr2,LOC108260271,LOC103373483,LOC107083133,LOC104918336,LOC102291375 other downstream 1219653 16140330 ~ 16146326 (+)
srl srl,LOC108261333,LOC107695714,LOC107661647,LOC107718567,LOC107553668 other downstream 2166607 17087284 ~ 17113156 (+)
cenpx cenpx other downstream 2777996 17698673 ~ 17733006 (+)

Expression


Co-expression Network