LOC113527870 (pcyt2,LOC108277112,LOC108437168,LOC107701914,LOC105013038)


Basic Information

Item Value
gene id LOC113527870
gene name pcyt2,LOC108277112,LOC108437168,LOC107701914,LOC105013038
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 15548504 ~ 15566563 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026916011.2
CGTACGACTCCGTGTCCTCGTGACGTCATTTCCCCGGCAAGAAGAGGAGGCGTTGCCCCTGTAAATGCCGAAAACCCGGCTATCCTGCCAAGAGGACGTACGAGCTGTTCACCTTGACACGGTAAATACTTGAATTTCGTCGTCAGTACCAGTAGGTTCGGAATAGAGCGCAGAGAAATTTCTAgacggtgatgatgatgatgaagaacgGCCAGCATCAGGCGGGCAGAGCGGGCGAGGAGGCGGAGGGGAAGCCGGTGGCGCTCGCCTGCAGTCCTGAGAAGAGGAGACGGATCGTGCGAGTGTGGTGTGACGGATGCTATGACATGGTCCATTATGGACACTCAAACCAGCTACGACAAGCCAAGGCTATGGGGGATTATCTCATTGTGGGAGTGCATACTGATGAAGAGATCTCAAAGCACAAGGGCCCACCCGTCTTTACACAAGCCGAGAGGTACAAGATGGTGCATGCCATCAAATGGGTGGATGACATAGTGGAGGGTGCCCCCTATGTTACCACTCTGGAGACTCTGGACAAGTACAACTGTGACTTCTGTGTACATGGAGATGACATCACTCTGACAGTGGACGGAAAGGACACATATGAAGAGGTGAAAAAGTCGGGCAGATACAGAGAGTGCAATAGGACTCAGGGTGTGTCCACTACAGACCTGGTTGGCCGCATGCTCCTGATGACTAAAGCTCACCACAGCAACATGGGAAGTTCAGATTATCAGCAACACACGGACAACTTTGGAAGGGGTCCAAAGGGTCACAGCCCCTGGACAGGGGTGTCTCAGTTTCTGCAGACGTCCCAAAAAATCATCCAGTTTGCCTCAGGGAAGGAGCCGCAGCTGGGGGACACCATTATATATGTGGCTGGAGCCTTTGACCTTTTCCATATTGGCCATGTGGATTTTTTGGAGGCAGTGTACAAGCTTTCAGACAAGCCATATGTTATTGTGGGGTTACATTTTGATCAGgagGTGAACCGCTACAAAGGAAAGAATTATCCCATCATGAACATCCATGAGAGAACTCTGAGCGTTCTGGCCTGTCGGTACGTCTCAGAGGTGGTAATTGGAGCTCCATACACAGTTTCAAAGGATTTGCTGGACCATTTTAAGGTGGATCTGGTTTGTCATGGAAAGACTGTAGTGTTTCCAGACAGAGATGGCTCAGACCCCTATGCTGTACCTAGGAGAAAAGGTATACTACGGATTGTGGATAGTGGAAACACCCTCACTACTGATGACATTGTTCAGAGGATAATAAAAAACAGGCTGCTGTTTGAGGCCAGGAACCAGAAGAAGGAGGCGAAGGAGATGGCAGTGATCCAGGCCATGAAGCAGCGGGAGGAGGACAAGGCTAAAGAGAGATCTCAGGCTGTGCTGTAGAAAAGCTCAGTTTCAAGTGAAAACACTGACTCAAACCCCAGCCCTCTTCGCAGTTCCACCTCCGATGTGTCCTTATCCACTCTCCATTACACTGGAGTAGTTcctctactgtgtgtgtgtgtgtgtgtgtgtgtgtgcgaaccACCAGCAGCTGTGACAAAACTAAGTGTTAGCAAAACCTTTGTAAACTGCTTGTTTTGTTAGGAGTGTGTCAGGAAATGTGTGTGGCTGAAAACCCTCCTCCGTAacaagtgtgtgtaaagagaaTACTTACATGATGCTCTTAGCGCCACTCATAACCCCCTGCTAGTTAACAGGACAGATCAACACACTCAGCTATGCCACAGTGACACACAACTAaacaaatatgatttttatataaatgtcacAGAAAATCCGTCTAACTTCCCTGACTTTAATTTACGAGTATTTCGATAACATTTAACCAGACACTCATATTCAGAGAAACTGAAAGAGGACTGCTTTGTAGTCCTGAAAACATCTTCACACTAGTACAGATGCCATTAAGATAAAACCCTGTGAGAGAGGAGTTTGTACAGGTATAAAAACAGAGTACAAGATgaacttattgtattttttattttttttcattatacaATCATCTGAATGTTCCCATTGTAAATCTCCTTGCTGCTTGTAGCCATTCGTGAGTGTTAAAACTGTACAGATGATCTGAAAATACATTGTATGAACACTATATGAAGCCCTGTTAGAAGGGATTCTTACtgttttaagggttttttttaaaatgatggcAGTCCTGCGTGAACAATACATGAGTTCTAGCATTTGGGACAATATGGGTCAAGCTTGATTCATGGTAATGAGACCATCTCTTTAATTGTATGTATATCTGTTCAGGTCTAGGAGAGAgaaggtgtgagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtggaagacaTCAGGACTTTTGTGACCCTCACCGGCACTCCGGATTTAGTGTTACCTCTTACGAGCTGGATCTGTTGTCACACCACTTGCAGCATATCTGTCatcatattgtaaatatgtattttatataacatgTACCTAATATAATAGAGCTCTTTATTTGTCTCAGATTTAAATAAGCTAAGCTggcagaagttttttttttctgcatgaatCACTGTAACAAATTTAAGATTATTCGAATACagaattaatgattaattaatcattagttTAATTCTGTCTCTTTTAATGGCACTGACATAAACCAGAAGATAGAAGATCATGTCTCAGGATGGCTTTGTTGTCCATTTTTACCCTGTTATTcttatttaaatactttaatttttctttcCCACACATTGCCTATATAGATCTAATCTAAGACACAAGAATGCATAAAGAAAAAGTGTCTCAGGGTCTTCTTTTTGAagacatttataattaataaattatatagaaGTGTGTCCCTGCTGTGGATGATGTAGCCTATAATATTCTGCTAACTTGGGGCATTTCCGAAACTAATTTCAGGTgtatttatggatttt

Function

symbol description
pcyt2 Predicted to enable catalytic activity. Predicted to act upstream of or within phospholipid biosynthetic process. Is expressed in central nervous system; cranial ganglion; epiphysis; and ventral mesoderm. Human ortholog(s) of this gene implicated in hereditary spastic paraplegia. Orthologous to human PCYT2 (phosphate cytidylyltransferase 2, ethanolamine).

GO:

id name namespace
GO:0009058 biosynthetic process biological_process
GO:0003824 catalytic activity molecular_function

KEGG:

id description
K00967 PCYT2; ethanolamine-phosphate cytidylyltransferase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026916011.2 True 2932 mRNA 0.43 13 15548504 15566563

Neighbor

gene id symbol gene type direction distance location
mafga mafga,LOC108277048,LOC107556599,LOC107739593,LOC107729585,LOC107701907,LOC106533856 coding upstream 14224 15523093 ~ 15534280 (+)
samd9l LOC108278244 coding upstream 27937 15509927 ~ 15520567 (+)
LOC113528209 ern1,LOC107555087 coding upstream 47079 15472866 ~ 15501425 (+)
tex2 LOC108278257,LOC108437163 coding upstream 79098 15437391 ~ 15469406 (+)
axin2 LOC108255292,LOC108437161 coding upstream 176321 15343257 ~ 15372183 (+)
rnf213a rnf213 coding downstream 50720 15617283 ~ 15663689 (+)
trnar-ucu_8 NA coding downstream 246679 15813242 ~ 15813331 (+)
LOC113528350 LOC108259890 coding downstream 256219 15822782 ~ 15826921 (+)
LOC113528274 rab26,LOC105905286,LOC102798624,LOC100707100,LOC101484267,LOC106579017 coding downstream 834191 16400754 ~ 16494702 (+)
LOC113527936 LOC108276743 coding downstream 979078 16545641 ~ 16549914 (+)
G211543 NA non-coding upstream 59522 15486537 ~ 15488982 (+)
G211540 NA non-coding upstream 76800 15469549 ~ 15471704 (+)
LOC117598819 NA non-coding upstream 343846 15203522 ~ 15204658 (+)
G211338 NA non-coding upstream 537853 15010142 ~ 15010651 (+)
G211287 NA non-coding upstream 648198 14899776 ~ 14900306 (+)
G211838 NA non-coding downstream 139186 15705749 ~ 15706001 (+)
G211856 NA non-coding downstream 273209 15839772 ~ 15840000 (+)
G212033 NA non-coding downstream 579816 16146379 ~ 16148542 (+)
G212029 NA non-coding downstream 585692 16152255 ~ 16153553 (+)
G212030 NA non-coding downstream 587053 16153616 ~ 16154250 (+)
LOC117598752 NA other upstream 557054 14988086 ~ 14991450 (+)
socs3a socs3 other upstream 926716 14619204 ~ 14621788 (+)
zgc:158403 zgc:158403,LOC108258290,LOC108441004,LOC107718630,LOC107553678,LOC107661656,LOC107695678 other upstream 2054562 13464085 ~ 13493942 (+)
znf653 znf653,LOC104961106,LOC107553636,LOC103393609 other upstream 2102818 13435381 ~ 13445686 (+)
ndufb10 ndufb10 other upstream 3174132 12367566 ~ 12374372 (+)
G211913 NA other downstream 351654 15918217 ~ 15968759 (+)
LOC113527983 sstr5,sstr2,LOC108260271,LOC103373483,LOC107083133,LOC104918336,LOC102291375 other downstream 573767 16140330 ~ 16146326 (+)
srl srl,LOC108261333,LOC107695714,LOC107661647,LOC107718567,LOC107553668 other downstream 1520721 17087284 ~ 17113156 (+)
cenpx cenpx other downstream 2132110 17698673 ~ 17733006 (+)
LOC113528485 prkar1b,LOC107661853,LOC107653458 other downstream 2617130 18183693 ~ 18342960 (+)

Expression


Co-expression Network