atp5mc1 (atp5g1,LOC108256653,LOC108413019,LOC107740625,LOC107662391,LOC107585044,LOC107582887)


Basic Information

Item Value
gene id atp5mc1
gene name atp5g1,LOC108256653,LOC108413019,LOC107740625,LOC107662391,LOC107585044,LOC107582887
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 9806798 ~ 9811581 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026916012.2
GTGGTTCATAAGCTTATAAATGACAAGGTGACAGTTTTACACGGCGCTCATTGACTCTAGCTTCAAGTTTGTCTCCTGGCCCTTGTGTATTAACTAGGCTTCAGACATGTACGCCTGCGCCAAGTTTGTCACTGCCCCTTCTGTGcTCCGTGGAGGCTCCAGAGTACTGGCCCGGCCTGTCTCCGTGTCTATCTTCAACAGACCTGAAGCCAGAACTGAGCAGGCAGCTCTCTTGCCTGTGAATGAGGCGTCTTTTCTGAACGTGAGCCGTAGCTTCCAGACCAGTGCTGTTTCCAGAGACATCGACACTGCAGCCAAGTTCATCGGTGCTGGTGCTGCTACAGTGGGAGTCGCTGGATCAGGAGCTGGAATTGGGACAGTGTTCGGTAGCCTGATCATTGGCTACGCCAGGAATCCATCCCTGAAACAACAGCTTTTCTCTTATGCCATCTTGGGTTTTGCCCTGTCTGAGGCCATGGGGCTTTTCTGTCTGATGGTGGCGTTCCTTATCCTGTTCGCCATGTAATTTAGACCTCTGTCCTCCTGTTTTTTGCCATGACCGTCCATCCAGGGATCAGAATCTGAAGCAGAGCTCACAAGGCCGTGGACATGCCATTCCAGCAAACTACTAGAAATATCTTGTCTGTTTCTCCCCTTCCTTCCCTCCATGAGGTTTTTATGTAATTTCTCACTACAGTTTGGGACAGTCTGTCTGAATAAATGGGTGGGATAACTTTA

Function

symbol description
atp5g1 Predicted to enable ligand-gated channel activity. Predicted to be involved in several processes, including ATP synthesis coupled proton transport; cellular response to L-glutamate; and negative regulation of mitochondrial membrane potential. Predicted to act upstream of or within ion transport. Located in mitochondrial inner membrane. Is expressed in several structures, including alimentary system; genitourinary system; hemolymphoid system; liver; and nervous system. Orthologous to human ATP5MC1 (ATP synthase membrane subunit c locus 1).

NR:

description
PREDICTED: ATP synthase F(0) complex subunit C1, mitochondrial

GO:

id name namespace
GO:0015986 ATP synthesis coupled proton transport biological_process
GO:0045263 proton-transporting ATP synthase complex, coupling factor F(o) cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0008289 lipid binding molecular_function
GO:0015078 proton transmembrane transporter activity molecular_function

KEGG:

id description
K02128 ATPeF0C, ATP5G, ATP9; F-type H+-transporting ATPase subunit c

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026916012.2 True 738 mRNA 0.50 5 9806798 9811581

Neighbor

gene id symbol gene type direction distance location
eve1 LOC108275867,LOC108412315 coding upstream 24876 9779523 ~ 9781922 (+)
nfe2l1a LOC108279857 coding upstream 318257 9477811 ~ 9488541 (+)
si:dkey-110g7.8 LOC108259846 coding upstream 405960 9390424 ~ 9400838 (+)
csf2rb NA coding upstream 494016 9300101 ~ 9312782 (+)
baiap2l2a LOC108258393 coding upstream 561014 9233003 ~ 9245784 (+)
ube2z ube2z coding downstream 2503 9814084 ~ 9827009 (+)
igf2bp1 igf2bp1,LOC108412303,LOC107717213,LOC107667758,LOC107582884,LOC106607494 coding downstream 29309 9840890 ~ 9879885 (+)
si:dkey-225f5.4 LOC108258433 coding downstream 75203 9886784 ~ 9893496 (+)
msl1a msl1 coding downstream 101187 9912768 ~ 9917101 (+)
casc3 casc3 coding downstream 106381 9917962 ~ 9926203 (+)
G208472 NA non-coding upstream 58788 9746285 ~ 9748010 (+)
G208415 hoxb9,hoxb9a,LOC107662432,LOC107585091 non-coding upstream 67932 9737009 ~ 9738866 (+)
G208430 NA non-coding upstream 72751 9732608 ~ 9734047 (+)
G208403 NA non-coding upstream 250984 9555612 ~ 9555814 (+)
G208382 NA non-coding upstream 308749 9495015 ~ 9498049 (+)
G208507 NA non-coding downstream 34503 9846084 ~ 9858882 (+)
G208504 NA non-coding downstream 53396 9864977 ~ 9883127 (+)
G208488 col1a1a,LOC108279263,LOC107585052,LOC107740634 non-coding downstream 227828 10039409 ~ 10061965 (+)
G208700 NA non-coding downstream 409702 10221283 ~ 10221539 (+)
G208701 dxo,LOC107752708,LOC107666098,LOC107691245,LOC107743041 non-coding downstream 414002 10225583 ~ 10226503 (+)
nupr1b nupr1,LOC108413333,LOC107660958,LOC107739393,LOC107567154,LOC100692788,LOC103393451 other upstream 743385 9061563 ~ 9063413 (+)
asphd1 asphd1,LOC107568490,LOC107755186,LOC107552472,LOC107739384 other upstream 848698 8950466 ~ 8958100 (+)
trnas-cga_1 NA other upstream 1798387 8008186 ~ 8008411 (+)
G207480 LOC107834952 other upstream 1953289 7853191 ~ 7853509 (+)
spsb3a spsb3,spsb3a,LOC107689049 other upstream 2484833 7309207 ~ 7321965 (+)
rapgefl1 rapgefl1,LOC107717207,LOC107662398,LOC107740631,LOC107667751,LOC107585050,LOC106600822 other downstream 132725 9944306 ~ 9987773 (+)
G208781 cacng4b,LOC108259704,LOC106606650,LOC107565862,LOC107691234,LOC106601773,LOC107724746,LOC107713946 other downstream 537821 10349402 ~ 10781459 (+)
cdc42ep4a LOC108256079,LOC108432235,LOC103033379 other downstream 1468499 11280080 ~ 11388020 (+)
luc7l3 luc7l3,LOC107674472,LOC107726809,LOC107654661 other downstream 1755538 11567119 ~ 11577823 (+)
tbc1d16 tbc1d16,LOC107559246,LOC107689993,LOC107670685,LOC107562324 other downstream 2237826 12049407 ~ 12086058 (+)

Expression


Co-expression Network