ankrd54 (ankrd54,LOC107728844,LOC107563363)


Basic Information

Item Value
gene id ankrd54
gene name ankrd54,LOC107728844,LOC107563363
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 11657529 ~ 11662120 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026916026.2
TTGCTTGAGCAATCGCCGTGTTTCTTACTGGGTTGAAGAGCTAACATGAAACAGGCGACATTTTggctctgtaacacactaacgACCGGTTGATTAACATATCTATTTTGAACCACAGTGGAATTGTAGCTGAGTTGTTTCTCTGACAACCGGAACAAGTAATGTAGCTCCTAAGCAGATTCTTAGGCACCgcagcagttttttttccaACTCCACTATCGAGCTAATAGGCTGTGTGCATATGTGAATGCGCTACTGTTAGTTTGCGTAATGCAGAGAAACAAACTTGTATGTGTTAAATGACTCGGTGAGTATGGAGGGGTCCGACGACGAGCGGTCCAGTTGTGAGGGCGAGTACATGCTGAGGAACTCGCCGCAGAAAGAAGTaaagggagaaaaaagggaggATGGGGCAGCCGTGGGAGCTGCTTCTTCGTTTGGCTTCTCGGGTATTGACACCTTGAGCGCCCTGAAGCTCCACCGCAGCAGCCATTCGGCGGAGAAAAGCCTCCGCTACCTGCACTCTTTATGGAGCCCGGGCGCGTTACTTCAGGCCGAACCGGCTGGAGGCAAAATGACGGTGAGCAGAACCAGAAGACTGGGGAGAGTCCGGAGAAACCTGGGACCTATAGGCAAAGACCTTTACGCTGTGAAGAGGCTCAGAGAAGCAGCCAATAGCAACGATATTGACACTGTTCGTAGGTTATTGCAGGATGGCATTGACCCATGCGCGGCAGATGACAAGGGAAGAACTGCTTTACATTTCTCCTCCTGCAATGGCAATGAGAGTATTGTTCAGCTGTTGCTAAGCCATGGTGCCGATCCAAACCAGCGAGACAGCCTTGGGAACACTCCTCTTCATCTTGCTGCCTGTACCAACCATGTGCCTGTCATCACTACTTTACTGAGAGGAGGTGCTCGTGTAGATGCATTGGACCGTGCAGGAAGAACCCCTCTGCATCTTGCACGCTCGAAGCTCAACATTTTACAGGAAGGAGAGTCCCGTAGCTTGGAAACCTTACGAGGAGAAGTCACTCAGATCATTCAGATGCTGCGTGAATACCTGAACGTGATGGGCCACAGTGAGGAGCGAGAGAAGCTGGAACATATTTCTACCCAACTACAACACACCCGCACTAAAGAACAGGTGGATGAGGTGACTGACTTACTGGCCAGCTTCACATCTCTAAGTATACAAATGCAGAATATGGGAGACAGGTAGAGAAGAATGGCCATGGAGGCTTACAGAAGGCTGGATGGGGAAAAAGTACctgagatatttatttacacatgacATATGttgtataattttaataatttggtCAGTTGTACAAAGTGTATGACTAAGTCAATGGCCTtcaaatgccttttttttaatatctttttattttgcgTTGTCTGTATATTTGTTCAGTCATTATTGTTCACTGTaaaccttttttgttttatgttgaaCATGTATcagacaatgacaataaaaaatgaTGTCCAAATA

Function

symbol description
ankrd54 Predicted to be located in cytoplasm; midbody; and nucleus. Orthologous to human ANKRD54 (ankyrin repeat domain 54).

NR:

description
ankyrin repeat domain-containing protein 54-like isoform X2

GO:

id name namespace
GO:0030496 midbody cellular_component
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component

KEGG:

id description
K21442 ANKRD54; ankyrin repeat domain-containing protein 54

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026916026.2 True 1495 mRNA 0.46 8 11657529 11662120

Neighbor

gene id symbol gene type direction distance location
foxred2 foxred2 coding upstream 402 11648149 ~ 11657127 (+)
mcm5 mcm5,LOC107703892,LOC107670920 coding upstream 15472 11635325 ~ 11642057 (+)
gcat gcat,LOC107703894 coding upstream 23856 11626282 ~ 11633673 (+)
si:ch73-281f12.4 LOC108278921 coding upstream 56117 11578560 ~ 11601412 (+)
unm_sa1261 unm_sa1261,LOC108274299,LOC108432226,LOC107726818,LOC107573384,LOC107674909,LOC107717497 coding upstream 96700 11538334 ~ 11560829 (+)
hmgxb4a hmgxb4 coding downstream 101 11662221 ~ 11671601 (+)
si:dkeyp-69e1.8 LOC108278349 coding downstream 9586 11671706 ~ 11677461 (+)
s1pr5a s1pr5a,LOC108260797,LOC108432217 coding downstream 77500 11739620 ~ 11743073 (+)
rfx1a LOC108260824,LOC108432209 coding downstream 167923 11830043 ~ 11850336 (+)
grin2ca grin2c,LOC100329743,LOC107658706,LOC107758122,LOC107559244 coding downstream 199466 11861586 ~ 11919663 (+)
G209392 NA non-coding upstream 23048 11633912 ~ 11634481 (+)
G209390 NA non-coding upstream 39295 11618035 ~ 11618234 (+)
LOC117598771 NA non-coding upstream 675236 10971721 ~ 10982293 (+)
G209069 tbl3,LOC107724722,LOC106601810 non-coding upstream 709988 10943255 ~ 10947541 (+)
G209067 NA non-coding upstream 725101 10932059 ~ 10932428 (+)
G209410 NA non-coding downstream 46608 11708728 ~ 11708936 (+)
LOC113528367 NA non-coding downstream 146141 11808261 ~ 11822910 (+)
G209775 NA non-coding downstream 357743 12019863 ~ 12021132 (+)
G209798 NA non-coding downstream 399449 12061569 ~ 12061782 (+)
G209863 NA non-coding downstream 471140 12133260 ~ 12133471 (+)
luc7l3 luc7l3,LOC107674472,LOC107726809,LOC107654661 other upstream 79706 11567119 ~ 11577823 (+)
cdc42ep4a LOC108256079,LOC108432235,LOC103033379 other upstream 269509 11280080 ~ 11388020 (+)
G208781 cacng4b,LOC108259704,LOC106606650,LOC107565862,LOC107691234,LOC106601773,LOC107724746,LOC107713946 other upstream 876070 10349402 ~ 10781459 (+)
rapgefl1 rapgefl1,LOC107717207,LOC107662398,LOC107740631,LOC107667751,LOC107585050,LOC106600822 other upstream 1669756 9944306 ~ 9987773 (+)
nupr1b nupr1,LOC108413333,LOC107660958,LOC107739393,LOC107567154,LOC100692788,LOC103393451 other upstream 2594116 9061563 ~ 9063413 (+)
tbc1d16 tbc1d16,LOC107559246,LOC107689993,LOC107670685,LOC107562324 other downstream 387287 12049407 ~ 12086058 (+)
LOC113528416 LOC108275780 other downstream 473149 12135269 ~ 12140371 (+)
arhgap17b LOC108279379,LOC108432202 other downstream 496583 12158703 ~ 12190070 (+)
ndufb10 ndufb10 other downstream 705446 12367566 ~ 12374372 (+)
znf653 znf653,LOC104961106,LOC107553636,LOC103393609 other downstream 1773261 13435381 ~ 13445686 (+)

Expression


Co-expression Network