gdpd3a (LOC108256211,LOC103040887,LOC108411042)


Basic Information

Item Value
gene id gdpd3a
gene name LOC108256211,LOC103040887,LOC108411042
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 6180799 ~ 6188261 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026916041.2
CTAACCACAGACGTACCTCCAGAGAGAGCATGACTGGAGAGGAGGAGAATTATTGCAACATTTAGGTTTTATGGTCTATGTAGAAGGAGtgactgtggttttttttcgCTTGTTCTGTCCGGTTTGACTAGTTCTGAGCTTAATCACCCTATCAATGCAGGAGGGTAACAAGAAGGAGGGGAGATATACAGGGGAAAAGGAAGGTGTACAGAAAGACAGCAAACAGGTCAGCAGTGAAAGAGAGTGAGGAAAGTCTGTGGGAACGGTGTCtaaaccatctctctctctctctctctctctctctctctctgccttctcCTCCCATAAGGATAAAGCAACAAGAGGACACACAAAGGATAAATCAGAATCAGTGACTTGTTACTTTCTGGATTCCTTGGGATTGACAGCCTGTGGAAATTATGTCCAGTTTCATGTATTACCTGCTCCCAGCAGTAGGGGGGTACACCATAACATCCCTCTACTTGCTGAAGAATCCATACATCCTGCACAAGAAGAAGCAGACAGCCTTCCACTGCATGCACATCTCACACAGAGGAGGTTCTGGAGAGAGAATTGAAAGCACCATGGAGGCTTTCACACATGCAGCCGAGGTGGGCACAGAGATGCTCGAGCTGGACTGTCACCTTACTCGTGATGGTCACGTGATTGTATCACATGATGAGAACCTCCTGCGGCAGACAGGGCTAGACGCCAACATCTCCGATCTAAACTTAGAGGAGCTACCACTGTATCAGGAACAACTTGAGGTTACATTTTACACAGgtcaCTACAGCACTGGCTCAGACAGAAAGTTTGCACTGTTAGAAGACGTCTTCCGCAAGTTTCCTAGGATGCCGGTGAACATCGAGGTGAAAGAGAACAACAAAGAGCTGATTGAAAAAGTATCTGCTCTTGTGAAGAAGTATGACCGAGAGGACATCACAGTTTGGGCATCTGTGGAGTCACCTATCATGAAGGAATGTcgtaaagtgAATTCCACTATGCCTTACATGTTCACGTATATGCGTGGCCTACAGCTGCTCCTGCTTTACTACACAGGCCTTCTGCCCTTCGTTCCATTGGGAGAAAGCTTCCTGCAGTACTACCTGCCCCAAGTCATCAACACGACGTACATACCAGAGCCTGGCATTCTGAGGAACAGATTGGTGATCTCATTCATTCAAAAGCTGACTTTGAGGAAAGGCTTGTTTCAGCATCTTAAAGACCGAGGAATTCAGATCcatctgtttgtttgtaatgAAGAACGGGACATCGAGGCTGCTTTTGCAGCAGGAGCAACCGGAGTCATGACTGATTATCCCACTCTCTTAGCAGACTACATTAGGAGGCACAGACAGGCCACATGAATGACAAGTTGAATGTTAcactgtattataataataataataataataataataataataatagcagcagTGAGGATTCTATTAACTTAttgtaaacatttgttttacaaaaaatgataatgaataatatataatgttagaACTACAATATTGATTTGAATGGCCTGGTTAATATTATACATGAGCTGACTTCCCTGTTTCTGGATTGTACACAGTTTATaaattgttttggttttgctccAGATTGCAGATTTCATCACGTTTGTGAGAACATCGAGTTCTGGTGAATATTAGTGtccagtgaaataaaacaactcATAAGCCTGCTTGTTCATAAGAATAGTCTGACTTTCCAGGATTTCACAATTCTCTCAGGAATACATAGTTCAAGTCAGTGTCACATTTCATCACAGAGACAATAATAAACTCATAAAAAGGCACACTGTTGTGCAGAGAGGCACGCAATTGCGTCATACTTTTACAAGACTAAAACACTGGCTTGAACAACcacaaaaaggttttaaattgtaatttctTTTAATCAGGGGCATTGAACCTAATCGCATTAAATTACATCTGATGCATTTATGTAATAACTATcatcactgtaaaataaatagatttatacCACaa
>XM_034310099.1
CACTAACCACAGACGTACCTCCAGAGAGAGCATGACTGGAGAGGAGGAGAATTATTGCAACATTTAGGTTTTATGGTCTATGTAGAAGGAGtgactgtggttttttttcgCTTGTTCTGTCCGGTTTGACTAGTTCTGAGCTTAATCACCCTATCAATGCAGGAGGGTAACAAGAAGGAGGGGAGATATACAGGGGAAAAGGAAGGTGTACAGAAAGACAGCAAACAGGTCAGCAGTGAAAGAGAGTGAGGAAAGTCTGTGGGAACGGTGTCtaaaccatctctctctctctctctctctctctctctctctgccttctcCTCCCATAAGGATAAAGCAACAAGAGGACACACAAAGGATAAATCAGAATCAGCCTGTGGAAATTATGTCCAGTTTCATGTATTACCTGCTCCCAGCAGTAGGGGGGTACACCATAACATCCCTCTACTTGCTGAAGAATCCATACATCCTGCACAAGAAGAAGCAGACAGCCTTCCACTGCATGCACATCTCACACAGAGGAGGTTCTGGAGAGAGAATTGAAAGCACCATGGAGGCTTTCACACATGCAGCCGAGGTGGGCACAGAGATGCTCGAGCTGGACTGTCACCTTACTCGTGATGGTCACGTGATTGTATCACATGATGAGAACCTCCTGCGGCAGACAGGGCTAGACGCCAACATCTCCGATCTAAACTTAGAGGAGCTACCACTGTATCAGGAACAACTTGAGGTTACATTTTACACAGgtcaCTACAGCACTGGCTCAGACAGAAAGTTTGCACTGTTAGAAGACGTCTTCCGCAAGTTTCCTAGGATGCCGGTGAACATCGAGGTGAAAGAGAACAACAAAGAGCTGATTGAAAAAGTATCTGCTCTTGTGAAGAAGTATGACCGAGAGGACATCACAGTTTGGGCATCTGTGGAGTCACCTATCATGAAGGAATGTcgtaaagtgAATTCCACTATGCCTTACATGTTCACGTATATGCGTGGCCTACAGCTGCTCCTGCTTTACTACACAGGCCTTCTGCCCTTCGTTCCATTGGGAGAAAGCTTCCTGCAGTACTACCTGCCCCAAGTCATCAACACGACGTACATACCAGAGCCTGGCATTCTGAGGAACAGATTGGTGATCTCATTCATTCAAAAGCTGACTTTGAGGAAAGGCTTGTTTCAGCATCTTAAAGACCGAGGAATTCAGATCcatctgtttgtttgtaatgAAGAACGGGACATCGAGGCTGCTTTTGCAGCAGGAGCAACCGGAGTCATGACTGATTATCCCACTCTCTTAGCAGACTACATTAGGAGGCACAGACAGGCCACATGAATGACAAGTTGAATGTTAcactgtattataataataataataataataataataataataatagcagcagTGAGGATTCTATTAACTTAttgtaaacatttgttttacaaaaaatgataatgaataatatataatgttagaACTACAATATTGATTTGAATGGCCTGGTTAATATTATACATGAGCTGACTTCCCTGTTTCTGGATTGTACACAGTTTATaaattgttttggttttgctccAGATTGCAGATTTCATCACGTTTGTGAGAACATCGAGTTCTGGTGAATATTAGTGtccagtgaaataaaacaactcATAAGCCTGCTTGTTCATAAGAATAGTCTGACTTTCCAGGATTTCACAATTCTCTCAGGAATACATAGTTCAAGTCAGTGTCACATTTCATCACAGAGACAATAATAAACTCATAAAAAGGCACACTGTTGTGCAGAGAGGCACGCAATTGCGTCATACTTTTACAAGACTAAAACACTGGCTTGAACAACcacaaaaaggttttaaattgtaatttctTTTAATCAGGGGCATTGAACCTAATCGCATTAAATTACATCTGATGCATTTATGTAATAACTATcatcactgtaaaataaatagatttatacCACaa

Function

NR:

description
PREDICTED: glycerophosphodiester phosphodiesterase domain-containing protein 1-like

GO:

id name namespace
GO:0006629 lipid metabolic process biological_process
GO:0006071 glycerol metabolic process biological_process
GO:0007420 brain development biological_process
GO:0008889 glycerophosphodiester phosphodiesterase activity molecular_function

KEGG:

id description
K22387 GDPD1_3, GDE4_7; lysophospholipase D

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026916041.2 True 2000 mRNA 0.42 11 6180801 6188261
XM_034310099.1 False 1966 mRNA 0.42 11 6180799 6188261

Neighbor

gene id symbol gene type direction distance location
cln3 cln3 coding upstream 33181 6138100 ~ 6147618 (+)
zgc:100868 NA coding upstream 51988 6119493 ~ 6128811 (+)
LOC113528511 NA coding upstream 154960 6024296 ~ 6025839 (+)
kcnj19a si:dkey-106c17.3,LOC108274233,LOC108432058,LOC107581800,LOC107654469,LOC107737881,LOC107674737 coding upstream 356599 5788721 ~ 5824200 (+)
asic2 asic2,LOC108411330,LOC107654528,LOC107674665,LOC107720021,LOC107737939 coding upstream 553819 5108421 ~ 5626980 (+)
LOC113527922 si:ch211-11k18.4,ehd3,LOC108260452,LOC108411040,LOC103375184 coding downstream 9379 6197640 ~ 6204209 (+)
LOC113528207 NA coding downstream 17279 6205540 ~ 6212540 (+)
rabep2 rabep2 coding downstream 27025 6215286 ~ 6222046 (+)
hsd17b1 hsd17b1 coding downstream 75938 6264199 ~ 6267998 (+)
si:ch73-141c7.1 LOC108258527 coding downstream 82874 6271135 ~ 6276711 (+)
G206339 plcd3,plcd3a,LOC108432051,LOC107674588,LOC107581738 non-coding upstream 188727 5990607 ~ 5992072 (+)
G206291 NA non-coding upstream 216718 5937248 ~ 5964081 (+)
G206301 LOC108257121 non-coding upstream 236367 5940879 ~ 5944432 (+)
G206289 NA non-coding upstream 255614 5918445 ~ 5925185 (+)
LOC117599005 NA non-coding upstream 310993 5868862 ~ 5869806 (+)
G206540 NA non-coding downstream 295418 6483679 ~ 6509229 (+)
G206722 hcrt non-coding downstream 362630 6550891 ~ 6551152 (+)
G206801 NA non-coding downstream 501195 6689456 ~ 6737847 (+)
G206835 ptrf non-coding downstream 542424 6730685 ~ 6810353 (+)
G206942 NA non-coding downstream 710581 6898842 ~ 6931386 (+)
mapk3 mapk3,LOC108256206,LOC108411041,LOC107567791,LOC107690275,LOC107686994 other upstream 5433 6160334 ~ 6175366 (+)
si:ch211-198p11.6 LOC108276725 other upstream 46227 6130780 ~ 6134572 (+)
tmem98 tmem98,LOC107674611,LOC107738157,LOC107654470,LOC107720031 other upstream 282599 5889552 ~ 5898200 (+)
G206166 NA other upstream 519951 5657612 ~ 5660848 (+)
gosr2 gosr2,LOC107654523,LOC102776032,LOC106601130 other upstream 1166283 5003548 ~ 5014516 (+)
LOC117598831 LOC106607284,LOC108262339,LOC108259095,LOC108259092,LOC108441610 other downstream 64083 6252344 ~ 6260857 (+)
eftud2 eftud2,LOC107690313,LOC107731090,LOC107653466 other downstream 896180 7084441 ~ 7102215 (+)
LOC113528597 gjc1,LOC108412533,LOC107754260,LOC107731105,LOC107567456,LOC107653474,LOC107570945,LOC107690314 other downstream 919917 7108178 ~ 7131967 (+)
spsb3a spsb3,spsb3a,LOC107689049 other downstream 1120946 7309207 ~ 7321965 (+)
G207480 LOC107834952 other downstream 1664930 7853191 ~ 7853509 (+)

Expression


Co-expression Network