abcc1 (abcc1,LOC107654509)


Basic Information

Item Value
gene id abcc1
gene name abcc1,LOC107654509
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 3353165 ~ 3396356 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026916046.2
CGGAAGCCCATAAGGGTGAGCGGGGAGGTGATGAACCTGAAGCCGCGGCGGTGTTGAGGGAAAGCGGACGCGCTCCCACGCAGCTCTCGGACATGGACCGCTTCTGCAGCGCGGGTTCCTCTGACTCCTCCGACCCCATCTGGgacTGGAACCGTACATGGCGCTCTCAAAACCCAGACGTGACGCAGTGTTTTCAGAACACGATCCTCATCTGGATCCCGTGTTTCTACCTCTGGCTATTCGCACCCTTTTACTTCCTGTACCTCAAAAGCCACAATCGCGGCTACATCTGTATGAGCCGCCTGAATAAAGCCAAAACCGTCACTGGGTTACTGCTGTGGATTATCTGCTGGTCAGATGTTTTCTACTCTTTATGGGAAAGAGGCCACGGGGTTGCGGTCGCACCCGTTTACCTAGTCAGTCCCACACTGCTCGGCATCACCATGTTGCTGGCTACGTTTTTCATCCAGTACGAGCGGATGAAGGGAGTCCAGTCCTCCGGAGTGATGCTGAACTTCTGGCTCATCGCTTTAGTTTGTGCTACGTTCACATTTCGCTCCAAAATCCTGCAGGCGCTCGATGAGCCTGCATCAGTAAACATCTTCAGATACACCACATTCTACATTTACTACGCTCTGCTATTAATCTCCCTCATCCTGTCCTGCATGTCTGACCAGCTGCCGCTCTTCTCCCCGACCGTCAAAGATCCGaatcCATGTCCAGAAGCAGGAGCAAGCTTCCTGTCTAGAATCAGCTTCTGGTGGATCACAGGGTTGTTGATGCGTGGCTACAAAAAGCCCCTAGAAGAGAAAGATTTATGGTCCCTAAATCCAGATGACGAGTCTCAGATGGTTGTGCCGCAGCTGGTGCGTCGCTGGAACCACGAATGCACCAAGGTCAAAAGgCCAGAAGACAAGGCCATATACTCGCCTAAGCGCTCGACCAAGGCCGAGGAAAAAGACAGGCAGCCGATCGAAGAGGCTGAGATCTTAATCTCGAGAGCTCCTCAGAAGACAAGAGAGCCatcactcttcctctctctgtgctgGACCTTTGGGCCGTACTTCCTCGTCAGCTCCGTCTACAAGATAATTCATGACATCCTGATGTTCGCAGGGCCGGAAATCCTCAGGCTGTTGATCCAGTTTGTGAACGACTCCAGCGCCCCCTCCTGGCACGGCTACTTCTACACGGCTCTGCTGTTCGTGTGCACCTGCGTACAGACGCTCATCCTGCAGAGATACTTCCACGTGTGTTTCGTGACGGGAATGAGGCTGCGTACGGCCATCGTAGGCGCCGTGTACAGGAAGgcGCTGGTGATTACGAACGCTGCTCGCCGCACATCTACAGTGGGAGAAATCGTGAACCTCATGTCAGTAGATGCACAGCGCTTCATGGACTTGATCACGTACATCAATATGATCTGGTCTGCACCTCTTCAAGTCATCCTGGCGCTTTACTTCCTCTGGCAGAATCTGGGTCCGTCTGTGCTGGCCGGAGTTGCTGTGATGGTGCTGATGGTTCCAGTAAATGCAGTTATAGCCATGAAAACCAAAACCTACCAGGTTGCACAGATGAAGAGCAAAGACAACAGGATAAAGCTGATGAACGAAGTGCTGAACGGCATCAAGGTGCTGAAGCTGTACGCGTGGGAGCTGGCCTTCAGAGACAAAGTGTCTCAGATCAGAGAGAGTGAACTGCACGTGCTGAAGAAGGCCGCTTACCTCGCCGCAGCTTCCACCTTCACCTGGGTCTGCGCTCCCTTCCTGGTGGCGCTGTCGACGTTTGCCGTGTACGTGCTTGTGGACGAGAACAACATTCTGGACGCGCAGAAGGCCTtcgtctctcttgctctctttaaCATCCTGCGTTTTCCTCTTAACATGCTCCCCATGGTCATCAGCAGCATGGTGCAGgcGAGTGTCTCAATGAAACGTCTGCGTGTGTTTCTTTCCCATGAGGAACTGGAAGAGGACAGCGTGGATCGCAGAGCAGTTACTGGCTCACCTGAAAGTATCAGGATTGTGGACGGAACTTTCAGCTGGTCTAGAGACGACCCTCCTGCTTTAAAGAGGGTTAATGTGTGTATTCCTGAAGGGGCGCTCGTTGCTGTAGTAGGTCAGGTGGGTTCGGGAAAATCCTCCCTACTCTCGGCTCTCCTGGGGGAAATGCACAAACAGGAGGGCTTTGTGTCGgtcaagGGTTCGGTGGCGTACGTGCCCCAGCAGGCGTGGATCCAGAACGCCACGCTGAGGGAGAACATCGTGTTCGGGCAGCAGATGAAGGAAAGCAGCTATCAGAGAGTGCTGGAGGCCTGCGCTCTCCTCCCAGACCTGGAGATCCTGCCTGGAGGAGACGACACCGAGATCGGAGAGAAGGGAGTGAATTTGTCTGGAGGTCAGAAGCAGCGTGTCAGTTTGGCCCGAGCGGTGTATTGTGACTGCTCTGTGTATTTGCTGGACGATCCGCTGTCCGCCGTCGACGCTCACGTTGGGAAACACATATTCGAGAAGGTCATCGGCCCTCAGGGTCTGCTGCAGGGATGCACGCGTGTGCTGGTGACCCACGGGCTCAGCTTCCTGCCTCAGGTCGACCTCATCCTGGTGATGGAGGATGGACAGATCACAGAGGCAGGCTCGTACACGGAGCTGCTCGGCCGACACGCCGCCTTCGCCGAATTCCTGCGCTCTCACACCAACGCCGAGCGGGAAGAGGAGAGCGAGGTCGGAGATACAACTCCACGGAAAACGCTGGAAAACGGAGGTCCAGCGGCTCTGCTGAGACAGAGCCAGGTTTCTTTAACCGCAGCAGGAACCATGAAGCAGAAAACGGAAAGCAATGACGTCAAAGAGCAGAAAACAAAATCTACAGACGTGGCCAAACTGACCGAGGCAGATAAAGCCAAGACAGGCAGAGTGAAGCTCGCCGTGTTCTGGGAGTACATGAAAGCCATCGGAGTGTGTCTGTCCATCTTCAGCATCTTCCTCTTCCTCGCTCATCACGTAGCGTCTCTGGGTTCCAATTACTGGCTCAGCTTATGGACGGATGATCCGGTCATTAACGGCACTCAGCCCAACAGAGACATGCGACTGGGAGTGTATGGAGCTCTGGGACTCAcacaagGCATTGCCGTGTTCTCTTACTCCATCTCCGTGTCTGTGGGTGGGATCCTGGCGTCTCGCTACCTCCACGAGACCATGCTGTATAACGTCCTGCGCTCGCCCATGTCGTTTTTCGAGCGCACTCCAAGCGGGAACCTGGTCAACCGCTTCTCCAAGGAGACGGACACCATCGACTCGGTGATCCCCAGCATCATCAAGATGTTCATGGGCTCCATGTTTAACGTGCTGGGAGCATGCACCGTCATCCTCATCGCCACTCCACTCGTGGCCATCATCATCCCTCCTCTGGGGCTCTTCTACTTCTTCGTGCAGcgcTTCTACGTGGCCTCGTCTCGGCAGCTGAAGCGTCTGGAGTCAGTGAGCCGCTCTCCGGTGTACACGCACTTCAACGAGACCCTGCTGGGTACGAGCGTGATCCGTGCCTTCGGAGTGCAGAATCGCTTCATCGGAGAGAGCGACAGACGAGTGGATCACAACCAGAAAGCCTACTACCCTAGCATCGTGGCTAACAggtggttaGCAGTGAGGCTGGAGTTTGTGGGGAACTGCATTGTGACGTTTGCTGCGTTTTTTGCTGTGATGGCCAGAGACAGTCTGAGTCCAGGCCTCATGGGACTTTCCATCTCCTACGCCCTGCAGGTCACTGCGTCCCTTAATTGGTTGGTGAGAATGTCGTCGGAGTTAGAGACCAACATCGTAGCCGTAGAAAAAGTGAAAGAGTACGGAGAAACGGAGAAAGAGGCGGAATGGAGACTGGAGAAAAGCTCGGTTCCTCCCGGATGGCCCACAGGCGGCCACATCGAGATGCGGAATTTTGGCCTGAGGTACCGACAGGACCTGGAACTGGCCATCCATGACATCAACGTGACCATCGAGGGAGGAGAGAAGGTGGGAATTGTGGGTCGGACCGGAGCAGGGAAGTCGTCTCTAACCCTCGGATTGTTCCGGATCATCGAGGCGGCTCAGGGTGAGATCTGTATTGATGGCGTGAACATCGCTGAGCTTGGCCTTCATGAGCTGCGCTCCCGCATCACCATCATCCCACagGACCCGGTTCTGTTCTCCGGATCTCTGCGCATGAACCTGGACCCGTTCGATGGTTACTCTGATGAGGAGGTGTGGAAAGCTTTGGAACTCGCTCATCTCAAAAGCTTCGTGTCGGGCCTTCAGGAGAAACTGAACCACGAGTGTTCCGAGGGAGGAGAGAACCTCAGtctgGGTCAGAGGCAGCTGGTGTGTTTGGCTCGAGCTCTCCTCAGGAAGACGAAGATTTTGGTTCTGGATGAAGCCACAGCGGCCGTGGACATGGAGACGGACAAACTGATCCAGTCCACCATCCGCACACAGTTCGAGGAGTGTACAGTGCTGACCATCGCTCACCGCCTCAACACCATCATGGATTACActcggGTGCTGGTTCTAGATAAAGGCCAGATGGTGGAGTTTGATTCTCCATCCAGTCTCATTGCAAAGAGAGGGATCTTCTACAAGATGGCTAAAGACTCGGGTTTGGcctgatttaaagaaaaaaaaaaaagaaagaaagaaagaaaaagacagaagcaGCAGTCTTTCTGGCATGATCACTCTGAAATCCACTGTGCAGTCTAGAATGCAGCTGTCACACTGGATGTCCTTGTCTGTTCTAGAACACAGCAGTCACTCCAGAATTTACCGTCCATTCAAGAACACCGCTCTCACTCCGGAATCCACCCTCCATTCTAGAACACAGCTCTCACTCCGGAATCCACCCTCCATTCTAGAACACAGCTCTCACTCCGGAATCCACCCTCCATTCTAGAACACAGCTCTCATGCCAGAATTAACTGTCCATTCTAGAACACAGCTGTGGGCGGAGCCTGTGGGGAGATGATCTTTAACTAGCACTTTCTTTTCCTGCTGCTGGACGAACTGTTACTGTAGAGAAAGACTCAAATTTTTCACACCAAAAACAACATTGAGTAAGATGTTATTTTTGAAGTACAAAAAGAGAactttagtttagtttaatttataaatCGACATTTCTGGACGTGTCAATTTTCTTTCAGAACCTCGAGGCTGCCGGTGTGTCAGGGTCTTTAAAGCGAGATGTGTTAAAGGCTTTTTGTACAGTCCATTCAAGCTTTGGAACAAAACAAGGCCTTCTCTTAGTCCAATGACGTGTAGGTTTGAATCCCTGAATACCTCCCACTtgcgtgtgcttgtgtgtgcgcatgcgtgtgtgtgtgtgtgtgtgtgtgtgtgcgcgagcgTGTGAAGCAGTCCAAAGATTACAGAACAGAAAGTTAATATAATTGACAGAGTCCTCTTAGGTCTCTGCATTatctaataaataaacctgccatttttaggagaaaactgtaaaaaagacaggaaagtgGTGATGATCTGTTTCATTAAAactgcgttcacactagcaagctcaaattaaaaaaataaataaatagtaatgaTGCAATAAAACAACAATCCAGGTTATTTGTTCTTTTCCTtagagtgaaataaaacaaaataaaataaacaaggtacctaaataaatataacGTGGTGTCATtcgcacaaaaaaaaaaagtttggatgCTCTAAAAATCTGGGTTCTCCTATTTGTTATTGGAATTTACAaaccacgcccacaagagacaacaTTAGCAGTTGTGCCACGCCCACAGGAGACAGACCTGGAGCAGTGTCACTGCTTcctgcttgctagtgtgaatgcacACTAATAACTGTagctgtattaaaattaaatatcgCAGGTTGCACATAATAGTATCATCCTAGAAGACAATTTTTTACCACtgacatttctatgatatttCATTTCAATAGATGATGCCACTAGTACGTATGTCTACACTGGCTGGCTGCGTACTTCCTTTACAGGGTCGTAATCTTTTGCTTAAACTTGCCATCTTCGATACGACACATCAAATCTTTTTTCTGGGTTTCTAACAATACGACACATCATTTCTTTTTGCTGGGTTTCTAACAAAAAAAGACGTACACTCAGGTCACATGAGGTACCAGCCCAGTTGATCGCATCATTACGGCGTCTTTGTGCACTATAAGGAAAAAAGACGTTGATTATATCAAATAGAGATCTGTACTGTGTGTCTAAACGCAAGCCAGTGCagtctcagtgctggtcccaagccccgAAGTGctgagggttgcgtcaggaagggcatccggcgtaaaactGCTGCCAGAATCCAAAATATGTGGACGGGTGATCCGCTGTAGCGACCCtgaatgggagcagccaaaagaggggAAAATACTGTCTAAACAcagcaagagaaaaaaataaccttCATGATGTTGAATGTAAACTCGCTCTCTCATATCATTACATAATCGGCCAGTCTTTTATCACAGATTACTAAGCTTCATCTCGATTcgtgtgctttttatttttccccccaaaacaTTATTGAACATTAGATCTCATTGTGTTGCCTCCTGACAGACTTTAGTTCAGGAGACTTCTCAAATACTTTCTCAGGCACTTGACTTCTGAGAGGTACACGGTGCTGTGATGACGATTGAAATGATCCCTGATGTGTCCTTTAAACAGAGCTGCTGAGGTGAAATGGTGGTTATGTAaggaatcaaacacacactgtcatgctgttataggaaaataatcagtgactgggtggaattttcctataacagcacatcctgaagtgttttattcctcttatactatagcagttttacagaaagtACAATCTAacagaatgacatgtcatgtttttatctgtttctagttacatttaatgtagaaTGTCTGTAAAACAAGTTCCTTTGTTATGACTTATCGGGTATagacagtcgtttcctcaccagcctctctttaagtttataagacaagaaaaaaaaaaaaaaaaaccgcaAGGTGTAAAGTCACAGATGTCATAAAGTTACAgcgttacctctgactgttacaaagagctgacagtggagactccttccataaacgtggagaaaaaaaaaaactccttacagaaaacttcaccacatcaactgTTATACGTGTTTGTTGCataacaataacgtattagaaccagtgtgttaatgtaaacctgtgttTGGAGTTGCACTACTGTccgaactgctgttatagaaaccgaatcaacaccttctgaccaatcagaatcgagaattcaacagcgctgtggtgtattttttaaaaataaatcgaGCCCATGAAGAAGGTACCTCATGTTGTGTAACCTAATATTTTGTAGAAGGTCACTCTTAACACGTGGCGTCTCGTTAATTATTTGACAGGGAAGGAGACGTGGGCTAACGGTATATCCGTGTCGTAACACCGATATATATTCGTCATTCTAAAATTGAAGTAATGTCTAATGTTAACAATCATCTGTAGGTTTGTCATCCTGTCTAGGTTTCTGTAGCCACAATGATCTAATTCACTCGGTTTATTATgcaataattaatcattttgtgGCCACCAAATACATCtggagaaatatattttaatacatacTTAATATATTAGTTTGTCGCTTtgccttattaaaaaaataaccactATGTCATCTCAGCGTAGTTTCAAGTTGAATATAGAGATTATCGCCTCGTGTCCAGTTTAATGTGTTAACTATTTACTTGCCATGTTTAAGAGATTGTGcttctgttatttttatctatgcaaattttatttaaagctgcttCCTCTTCTTATATACAACAAAGATTTATTTTCCTTCTGATAATGAAGTCTGAATTCTTACATTACGAGCACTCCGTATCTCTACATATATCCAGAGCTATTTTCTTTTAAGCATCTTTCTacctgctgatttttttttttttttttgtgcgtgAGTGTGTAATAGCTGAATGTACCAAACGCATCGTTTTATGGGCAGTCTTGGAGTTTATtaccaaacttttgcatttcaAATACGCCACATTCATTTGTTACTTATTTATACCGTGTGCGTTTGTTCAGTATGTATGcgtattgttattatttgtaatatacATGCACTAGTTTTGAAGTGTGCTTCCTTTCATGAAACAAAATGTagagttaaataaaataaataaatagttttgtaACCATTTTTGTGCCATTTGTAAATGTCACGAAAAGAGAAATGCGTATGTCGGTAGCGAGAATAAAAgttttgtaactttt

Function

symbol description
abcc1 Predicted to enable ABC-type xenobiotic transporter activity and glutathione transmembrane transporter activity. Acts upstream of or within detoxification of cadmium ion. Predicted to be integral component of membrane. Predicted to be active in basolateral plasma membrane. Is expressed in several structures, including eye; gill; heart; liver; and pleuroperitoneal region. Human ortholog(s) of this gene implicated in autosomal dominant nonsyndromic deafness 77 and chronic obstructive pulmonary disease. Orthologous to human ABCC1 (ATP binding cassette subfamily C member 1).

NR:

description
PREDICTED: multidrug resistance-associated protein 1-like

GO: NA

KEGG:

id description
K05665 ABCC1; ATP-binding cassette, subfamily C (CFTR/MRP), member 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026916046.2 True 8301 mRNA 0.47 31 3353165 3396356

Neighbor

gene id symbol gene type direction distance location
LOC113528532 tbc1d10b,LOC107737756,LOC107554125,LOC107582992 coding downstream 81195 3247701 ~ 3271970 (-)
cd2bp2 cd2bp2,LOC107554127 coding downstream 134238 3214486 ~ 3218927 (-)
prr14 NA coding downstream 139230 3200147 ~ 3213935 (-)
rusf1 c2h16orf58,cunh16orf58,LOC102793205,LOC107577286 coding downstream 162148 3182985 ~ 3191017 (-)
LOC113528657 NA coding downstream 196456 3156617 ~ 3156709 (-)
gspt1l gspt1l,LOC100304847,LOC108438004,LOC107721494,LOC107654506,LOC106529451,LOC104930119 coding upstream 20043 3416399 ~ 3435123 (-)
pdxdc1 pdxdc1 coding upstream 41203 3437559 ~ 3467406 (-)
si:dkeyp-72e1.9 LOC108255663 coding upstream 105679 3502035 ~ 3525105 (-)
csnk1da csnk1d,LOC108259482,LOC103024472,LOC107601268,LOC107590392,LOC107688108,LOC107654491,LOC108435268,LOC107566590 coding upstream 191594 3587950 ~ 3623087 (-)
gps1 gps1,LOC107654488,LOC107721507,LOC107688111 coding upstream 245185 3641541 ~ 3657287 (-)
G204664 NA non-coding downstream 178888 3171262 ~ 3174277 (-)
G204524 NA non-coding downstream 319937 3028815 ~ 3033228 (-)
G204518 NA non-coding downstream 382296 2965883 ~ 2970869 (-)
LOC117598767 NA non-coding downstream 752813 2599709 ~ 2600352 (-)
G204317 NA non-coding downstream 811640 2541126 ~ 2541525 (-)
G205038 NA non-coding upstream 204646 3601002 ~ 3602239 (-)
G205030 NA non-coding upstream 220815 3617171 ~ 3620119 (-)
G205040 dus1l,LOC102781131 non-coding upstream 234338 3630694 ~ 3631383 (-)
G205063 NA non-coding upstream 307927 3704283 ~ 3738959 (-)
G205145 NA non-coding upstream 552493 3948849 ~ 3957710 (-)
si:dkey-283b1.7 LOC108276203,LOC107737768,LOC104929916,LOC106607185 other downstream 275147 3073977 ~ 3078018 (-)
si:dkey-283b1.6 NA other downstream 313513 3034246 ~ 3039652 (-)
LOC113528062 LOC108276032,LOC108276106 other downstream 815054 2433149 ~ 2538111 (-)
LOC113528223 LOC108276032,LOC108261353,LOC108261342 other downstream 1008253 2331676 ~ 2344912 (-)
ifi35 ifi35 other downstream 1157625 2112445 ~ 2195540 (-)
kcnc3a kcnc3a,LOC108259249,LOC107729449,LOC108427388,LOC107693499,LOC107548332,LOC105891716 other upstream 372499 3768855 ~ 3865849 (-)
G205173 gfap,LOC103392664 other upstream 644125 4040481 ~ 4044575 (-)
dcaf7 dcaf7,LOC100702343,LOC105030232 other upstream 696557 4092913 ~ 4117643 (-)
mlx mlx,LOC107721525,LOC107601295,LOC107720011,LOC107590371,LOC107654516,LOC107688133,LOC106601136 other upstream 1326061 4722417 ~ 4734902 (-)
G205633 rps11,LOC102786880,LOC107674708 other upstream 1692980 5089336 ~ 5091922 (-)

Expression


Co-expression Network