rnd2 (rnd2,LOC108273890,LOC108413538,LOC107708553,LOC107552458,LOC107754744,LOC107567027,LOC103142158)


Basic Information

Item Value
gene id rnd2
gene name rnd2,LOC108273890,LOC108413538,LOC107708553,LOC107552458,LOC107754744,LOC107567027,LOC103142158
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 8130367 ~ 8155274 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026916053.2
CGTGAGCCACGCGCTCGGCTGAATGCTGAAGAGGTTACAGGGAGCGTGGCGTCACTGTGGGAACCGAGAGGCTACTGATCTACTGTCAGAGGAGCTTTAAGGAGCCGtagttctgtctctctccgtctctcagAAGGCACGGATCTCTTCCGAGCTCTCCAAGCGGACcctgtgtacttttttttgccCTGGATTTGCTCGCACCGCCGCGCAGTCTGGCCGTCAGCAGCGCATGGTGTTCGGTACTGCGGCTGTGCGCGCGCGGCTCTGACGGGGACGCTCTCACCGGTGCGCTGATGGAGGGACAGGgtcagggacagggacagggacagggacagatCAGTCGCTGTAAGATCGTGGTGGTCGGCGACACTCAGTGCGGCAAAACGGCACTGCTGCACGTGTTCGCCAAAGACAGCTATCCTGAGAGCTATGTGCCCACAGTGTTTGAAAACTACACAGCGAGCTTTGAGATCGACAAACACCGGATTGAGCTGAACATGTGGGACACGTCAGGCTCTTCATACTATGATAATGTGCGGCCGCTGGCGTACCCAGACTCAGATGCAGTGCTCATTTGTTTCGACATCAGCAGGCCTGAGACTCTGGACAGCGTTCCAAAGAAGtggcAGGCTGAGGCTCAGGAGTACTGTCCCAATGCTAAGCTAGTGCTAGTGGGCTGTAAGCTCGACATGAGGACGGACGTCAGCACCTTGCGAGAACTGTCCAAACAGCGCCTCATACCCGTCACACACGAGCAGggCAGTCTGCGGGCACGGGAGCTCGGCGCAGTGGCGTACGTCGAGTGTTCCTCACGTATGTGCGTAAACAGCGTGCGAGACGTCTTTCACGTCACCACTCTTGCCTCCGTCAGACGCCCCGTCCCCGGCCTCAAGCGAAGCTCCTCTCGCCGCACCCTCAAGCGCATATCCCATCAGCCCCTGCTGCCAATCAACTCCCGCACCACACCCCTCGAACCCTCCCCTACGCTCAGGAAGGACAGAGCCAAAAGCTGCAACATCATGTAGAAAAAAACGcagcaaacacagaaacaaataaacacagctgTGTCCTGAGCTTGTCCTTCTAAACTGGATTTCTCACAGCTGTGATCTGTTGTGAAATTACAATTCTATGCTTCTACGCTGTACAAATGTGCTAATGAGTGCCACAGAGGACTATTTATTGACCatgaagttgttgttgtttattattttgtcacTGAAAGTAAGCAAGAATACAGAGATTTTATGGGATTATA

Function

symbol description
rnd2 Predicted to enable GTP binding activity; GTPase activity; and protein kinase binding activity. Predicted to be involved in several processes, including cytoskeleton organization; regulation of actin cytoskeleton organization; and regulation of cell shape. Predicted to act upstream of or within small GTPase mediated signal transduction. Predicted to be active in several cellular components, including cell cortex; cytoplasmic vesicle; and cytoskeleton. Orthologous to human RND2 (Rho family GTPase 2).

NR:

description
PREDICTED: rho-related GTP-binding protein RhoN-like

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0005622 intracellular anatomical structure cellular_component
GO:0016020 membrane cellular_component
GO:0005525 GTP binding molecular_function

KEGG:

id description
K07858 RND2; Rho family GTPase 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026916053.2 True 1261 mRNA 0.54 5 8130367 8155274

Neighbor

gene id symbol gene type direction distance location
rprml LOC108261071 coding downstream 144545 7984469 ~ 7985822 (-)
LOC113528501 cq072 coding downstream 162377 7961774 ~ 7967990 (-)
phb phb,LOC107661032 coding downstream 650111 7473512 ~ 7480256 (-)
znf652 znf652,LOC108258819,LOC106607259 coding downstream 662532 7446563 ~ 7467835 (-)
phospho1 phospho1 coding downstream 693186 7431991 ~ 7437181 (-)
si:busm1-163l24.4 LOC108277007 coding upstream 46491 8201765 ~ 8203353 (-)
si:busm1-163l24.3 LOC108276929 coding upstream 48786 8204060 ~ 8209776 (-)
atxn7l3 atxn7l3,LOC108276986,LOC107571925,LOC107660606,LOC107566928 coding upstream 71023 8226297 ~ 8236622 (-)
ubtf ubtf,LOC102797579,LOC107660581 coding upstream 82876 8238150 ~ 8248789 (-)
spop spop,LOC107754841,LOC100710366 coding upstream 411497 8566771 ~ 8660121 (-)
G207653 mrc2 non-coding downstream 15793 8110658 ~ 8114574 (-)
G207571 NA non-coding downstream 93519 8033282 ~ 8036848 (-)
G207565 NA non-coding downstream 100918 8029206 ~ 8029449 (-)
G207540 NA non-coding downstream 182196 7943678 ~ 7948171 (-)
G207254 NA non-coding downstream 816712 7312082 ~ 7313655 (-)
G207650 NA non-coding upstream 21084 8176358 ~ 8200778 (-)
G207732 NA non-coding upstream 198436 8353710 ~ 8358074 (-)
G207793 LOC107737118,LOC107558774 non-coding upstream 276724 8431998 ~ 8432261 (-)
G207860 NA non-coding upstream 337541 8492815 ~ 8493041 (-)
G207895 NA non-coding upstream 379229 8534503 ~ 8534712 (-)
crhr1 crhr1,LOC108261365,LOC107662410,LOC108413653 other downstream 424875 7559767 ~ 7705492 (-)
natd1 natd1,LOC107661164,LOC107568532,LOC107689058 other downstream 699255 7425717 ~ 7431112 (-)
G207231 spsb3 other downstream 808405 7318603 ~ 7321962 (-)
stat5a sta5b,stat5,LOC108279147,LOC108444239,LOC105013349 other downstream 1404202 6646058 ~ 6726165 (-)
G206604 NA other downstream 1935371 6126910 ~ 6194996 (-)
slc4a1a LOC108279353 other upstream 94611 8249885 ~ 8267638 (-)
selenow2a mien1,sepw2a,LOC107566883,LOC107755209 other upstream 124493 8279767 ~ 8289808 (-)
LOC113528661 NA other upstream 129200 8284474 ~ 8284592 (-)
ndufa4l ndufa4l,LOC108260900,LOC108413413,LOC107684646,LOC107590798,LOC103026352,LOC107582867 other upstream 552680 8707954 ~ 8713318 (-)
LOC113527952 LOC108260010,LOC108274064 other upstream 957692 9112966 ~ 9142871 (-)

Expression


Co-expression Network