pvalb6 (pvalb6,LOC108258409,LOC108412390,LOC100701083,LOC103371237,LOC107690741,LOC101478422,LOC107602319)


Basic Information

Item Value
gene id pvalb6
gene name pvalb6,LOC108258409,LOC108412390,LOC100701083,LOC103371237,LOC107690741,LOC101478422,LOC107602319
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 9247782 ~ 9285940 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026916054.2
CTTTCTCTcgcactctctctccccttcatCTCACCTCCAACCAGTCAGTGCTCCCTCTCCTTTCTGctctctccccctgtctctttttcttcctctatatctctctctctctgtttctctctctccctctctctcccttcctttctctctgtctccctggtCGGTGTGCTCTGACTCCTGGTCACTCAGCTACTCTACTCAAGCCTGTCCAGCTGCTGTACTCAATCTAGGACCCAGTGTCAACACTCAACACCAGCTGCAAAAATGGCAATGAGTAGCATCCTGAACACTGATGACATTAAGAAGGCCCTGGATGCATTCAAAGCTGCTGACTCATTCGACCATAAGAAGTTCTTCGAGATGGTGGGGCTGAAGGGAAAATCGTCCGATGATGTGAAGAAGGCCTTCCATGTACTGGACGCTGACAACAGCGGCTTTATAGAGGAAGAGGAGCTAAAATTTGTGCTGAAGGGCTTCGCTACCAATGGAAGAGATCTGACTGATAAAGAAACCAAAGCCTTCTTAAAGGCAGCTGATAAAGATGGAGACGgcaagattggagtggaagagTTTGTTGCTCTTGTCCAAGAGTAAGCAACACTGTCCAGGCCATCCCATGCCCTAATGACTCCTGACACACActcccaatacacacacacacacacacacacacacacacacaccctgtacattTTCACTCACCTCCTACAATcatgctatttatttttttccttttttttatacaaatgtgtgtttgtgttagtgtacAGGTGAAGAGGTGTAAACCTTCATCTTGGAAGTATGTACAGTAGATACTTTAAGAGGAATAGCCCACTCCCTTCATCTGTATTATTCTGcattcctttctctctttcccttctcCCTTTATCATTTGATCAATTGTTCTTTCCTCCACTCCTTAGCATTGCTTTGCCCTTGTcctgtctccatctctccctctcttcagAGCTGTTGTGAAATACACCAAATGAAGCAGGTCaaactgtgaaagaaaaaaaataaaacaagacaatatGCCTCGAGG
>XM_026916055.2
aaacatcagaatggggaaagatGTTATCTCAGTGACTGTAGAATGGTTGTtgttgccagatgggctggtttgattatttcggaaactgctgatctcctgggatttcacacataacacatctagagtttacacagaatggtgcaaataAAAAAGCCCAAAAACATCCAGCtagcagcagttctgtgagtggaaatgccttgttgatgagagaggttagaggagaaTTGCCAGACAGGTTCAAGCTGActggaagtctacagtaactcaaataacaactctttacagccatgCTGCAAAAATGGCAATGAGTAGCATCCTGAACACTGATGACATTAAGAAGGCCCTGGATGCATTCAAAGCTGCTGACTCATTCGACCATAAGAAGTTCTTCGAGATGGTGGGGCTGAAGGGAAAATCGTCCGATGATGTGAAGAAGGCCTTCCATGTACTGGACGCTGACAACAGCGGCTTTATAGAGGAAGAGGAGCTAAAATTTGTGCTGAAGGGCTTCGCTACCAATGGAAGAGATCTGACTGATAAAGAAACCAAAGCCTTCTTAAAGGCAGCTGATAAAGATGGAGACGgcaagattggagtggaagagTTTGTTGCTCTTGTCCAAGAGTAAGCAACACTGTCCAGGCCATCCCATGCCCTAATGACTCCTGACACACActcccaatacacacacacacacacacacacacacacacacaccctgtacattTTCACTCACCTCCTACAATcatgctatttatttttttccttttttttatacaaatgtgtgtttgtgttagtgtacAGGTGAAGAGGTGTAAACCTTCATCTTGGAAGTATGTACAGTAGATACTTTAAGAGGAATAGCCCACTCCCTTCATCTGTATTATTCTGcattcctttctctctttcccttctcCCTTTATCATTTGATCAATTGTTCTTTCCTCCACTCCTTAGCATTGCTTTGCCCTTGTcctgtctccatctctccctctcttcagAGCTGTTGTGAAATACACCAAATGAAGCAGGTCaaactgtgaaagaaaaaaaataaaacaagacaatatGCCTCGAGG

Function

symbol description
pvalb6 Predicted to enable calcium ion binding activity. Predicted to be active in cytoplasm and nucleus. Is expressed in nervous system and otic vesicle. Orthologous to human PVALB (parvalbumin).

NR:

description
PREDICTED: parvalbumin-7-like

GO:

id name namespace
GO:0005509 calcium ion binding molecular_function

KEGG:

id description
K23926 PVALB; parvalbumin alpha

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026916054.2 False 1045 mRNA 0.45 5 9247782 9285940
XM_026916055.2 True 1079 mRNA 0.43 5 9247782 9271902

Neighbor

gene id symbol gene type direction distance location
cbx6b LOC108274693,LOC108260787 coding downstream 16534 9208211 ~ 9231248 (-)
trnav-cac_10 NA coding downstream 60190 9187520 ~ 9187592 (-)
mvp mvp,LOC107739398 coding downstream 63269 9168382 ~ 9184513 (-)
LOC113527879 LOC108274494,LOC107552447 coding downstream 81549 9158376 ~ 9166233 (-)
zgc:66443 LOC108261131 coding downstream 95774 9144574 ~ 9152008 (-)
pdgfbb LOC108260470 coding upstream 35319 9321259 ~ 9335630 (-)
tmem150b tmem150b coding upstream 87212 9373152 ~ 9379596 (-)
adsl adsl coding upstream 94734 9380674 ~ 9391360 (-)
LOC113528600 LOC108258913 coding upstream 115745 9401685 ~ 9412610 (-)
cbx1a LOC108279860,LOC108413138,LOC103037352 coding upstream 204408 9490348 ~ 9501580 (-)
G208189 NA non-coding downstream 144656 9102911 ~ 9103126 (-)
G208158 nupr1,LOC108413333,LOC107660958,LOC107739393,LOC107567154,LOC100692788,LOC103393451 non-coding downstream 184275 9061580 ~ 9063507 (-)
G208153 NA non-coding downstream 216804 9030525 ~ 9030978 (-)
G208151 NA non-coding downstream 222799 9024761 ~ 9024983 (-)
G208145 NA non-coding downstream 240523 9007000 ~ 9007259 (-)
LOC117598997 NA non-coding upstream 156046 9441986 ~ 9446104 (-)
G208391 NA non-coding upstream 208683 9494623 ~ 9505750 (-)
G208473 NA non-coding upstream 460556 9746496 ~ 9748039 (-)
LOC117599011 NA non-coding upstream 543687 9829627 ~ 9927942 (-)
LOC113528446 NA non-coding upstream 551310 9837250 ~ 9838412 (-)
dnal4a dnal4,LOC108261343,LOC108412416,LOC108436609,LOC106591471 other downstream 44142 9196496 ~ 9203640 (-)
LOC113527952 LOC108260010,LOC108274064 other downstream 104911 9112966 ~ 9142871 (-)
ndufa4l ndufa4l,LOC108260900,LOC108413413,LOC107684646,LOC107590798,LOC103026352,LOC107582867 other downstream 534464 8707954 ~ 8713318 (-)
selenow2a mien1,sepw2a,LOC107566883,LOC107755209 other downstream 957974 8279767 ~ 8289808 (-)
prr15la LOC108273894,LOC108412372 other upstream 123864 9409804 ~ 9419584 (-)
copz2 copz2,LOC108260256,LOC108413159,LOC107740614,LOC107662379,LOC107710054,LOC107585036,LOC107687783,LOC105013247,LOC108246742,LOC106527321,LOC106912034 other upstream 178391 9464331 ~ 9474478 (-)
hoxb8a hoxb8a,LOC108278530,LOC108413053,LOC103044850,LOC107582957,LOC107662386,LOC107585089 other upstream 443911 9729851 ~ 9732566 (-)
tecpr1b LOC108276900 other upstream 1164784 10450724 ~ 10470518 (-)
hmox1a hmox1,LOC108432221 other upstream 2356217 11642157 ~ 11647997 (-)

Expression


Co-expression Network