gcat (gcat,LOC107703894)


Basic Information

Item Value
gene id gcat
gene name gcat,LOC107703894
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 11626282 ~ 11633673 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026916066.2
CGTTAGTGCGATGTTGCGTCATTCAGCGCCGCGGTCTCCGGTCAACGTCACTGATTTGTGTAACACGTTTCTTTGGGCTTTGACAGCAGAAGCGCCATGGCACTTCGCTCGATTTTTGGTCAGATTAAAACTCCTCTAAGAGAAATTCTGAAGAGCCAGAATGTCATTTCGAGTCGAGCTTGTGCCGCTATCGCGCACGCGAGGTCTGTGCTGGAGGGCGAGCTGGAGACGATCCGCGCTGCAGGGACGTGGAAGGGGGAGAGAGTCATTACATCCAGTCAGGGACCGCATATCAGCGTGGACGGCAGTCGTGGCGATATATTGAACTTCTGTGCCAATAACTATCTGGGCCTGTCCAGTCATCCAGAGGTGATTCAGGCTGGAATTGAGGCACTGCAAAAATACGGAGCTGGGCTGAGTTCAGTCAGGTTCATCTGCGGGACACAGgATCTTCATAAGCACTTAGAGCAGAAGCTAGCTCAGTTCCATGAAAGAGAAGACTGCATCCTGTATGCAAGCTGCTTTGATGCCAATGCTGGTCTCTTTGAGGTCCTGCTGGGCCCAGATGATGCTGTGTTATCTGATGAACTGAACCATGCCTCAATCATCGACGGAATTAGACTGTGTCGGGCGCAAAGGTTCCGCTACAAGCACATGAACCTGGATGATTTGGAGGAAAAGCTGAAAGAGTCCCAGTCCTGCCGACTGAGGCTGGTGGTAACTGATGGTGTGTTCTCTATGGATGGTGACGTGGCTCCACTGGTGGGTATCTGTGATCTCGCTGAGCAGTATGGAGCGTTGGTCTTTATCGATGAATGCCATGCAACAGGATTCTTGGGTCCTCGTGGCCGAGGTACTGATGAGCTGCTGGGGGTGATGGACAGAGTGCACATAGTGAACTCCACTCTGGGAAAAGCTCTTGGAGGGGCAGCAGGTGGTTACACAGTCGGACCAAAACCTTTAATTGACCTACTCAGGCAGCGCTCTCGTCCTTATCTCTTTTCCAACTCTCTCCCTCCTCCGGTGGTGGGCTCTGCCACACGTGCAGTGGAACTACTGCTGGCATCCAACGAAATTGCACAGAGCATGGCTGCCAAAACCATGAGGTTTAGAAACAGCATGACAAAGGCAGGGTTCACCATCGCAGGCACAGCTCATCCCATCTGCCCAGTGATGCTGGGAGATGCTCGTCTGGCTTCCATCATGGCTGATGACATGCTTAAACTGGGAGTGTATGTGATTGGATTCTCTTATCCCGTGGTTCCCAAAGGAAAAGCTCGTATCCGGGTCCAGATCTCGGCTGCGCACACTGAGTCAGATATAGATCGTGCTGTAGATGCCTTCATACAGACTGGCCGAAAACATGGAGTTATATCATAGTGTTATACTCAGCTATTAGTAGAACTGGGTGCCTTTAATAGATTTACATGGTGGCTTTAAAGAAATGGACTGTTACAGTGAGACTTAACATTAGCTTGGCAATTCTGCTGAGATGCATAGGgtgaaaatgaatgagtttGCAGTAATAAATGCTTTTCTCAGTATTTCATCTGCC

Function

symbol description
gcat Predicted to enable glycine C-acetyltransferase activity and pyridoxal phosphate binding activity. Predicted to act upstream of or within biosynthetic process and threonine catabolic process. Predicted to be active in mitochondrion. Orthologous to human GCAT (glycine C-acetyltransferase).

NR:

description
2-amino-3-ketobutyrate coenzyme A ligase, mitochondrial

GO:

id name namespace
GO:0009058 biosynthetic process biological_process
GO:0030170 pyridoxal phosphate binding molecular_function
GO:0008890 glycine C-acetyltransferase activity molecular_function

KEGG:

id description
K00639 kbl, GCAT; glycine C-acetyltransferase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026916066.2 True 1555 mRNA 0.50 9 11626282 11633673

Neighbor

gene id symbol gene type direction distance location
si:ch73-281f12.4 LOC108278921 coding upstream 24870 11578560 ~ 11601412 (+)
unm_sa1261 unm_sa1261,LOC108274299,LOC108432226,LOC107726818,LOC107573384,LOC107674909,LOC107717497 coding upstream 65453 11538334 ~ 11560829 (+)
LOC113528662 NA coding upstream 89117 11537047 ~ 11537165 (+)
atp5pd atp5h,LOC103042933,LOC103361245 coding upstream 90590 11531521 ~ 11535692 (+)
ndel1b ndel1,ndel1b,LOC108432229,LOC105910967,LOC107670517,LOC107744966 coding upstream 117493 11500895 ~ 11508789 (+)
mcm5 mcm5,LOC107703892,LOC107670920 coding downstream 1652 11635325 ~ 11642057 (+)
foxred2 foxred2 coding downstream 14476 11648149 ~ 11657127 (+)
ankrd54 ankrd54,LOC107728844,LOC107563363 coding downstream 23856 11657529 ~ 11662120 (+)
hmgxb4a hmgxb4 coding downstream 28548 11662221 ~ 11671601 (+)
si:dkeyp-69e1.8 LOC108278349 coding downstream 38033 11671706 ~ 11677461 (+)
G209390 NA non-coding upstream 8048 11618035 ~ 11618234 (+)
LOC117598771 NA non-coding upstream 643989 10971721 ~ 10982293 (+)
G209069 tbl3,LOC107724722,LOC106601810 non-coding upstream 678741 10943255 ~ 10947541 (+)
G209067 NA non-coding upstream 693854 10932059 ~ 10932428 (+)
G208916 NA non-coding upstream 769267 10855155 ~ 10857015 (+)
G209392 NA non-coding downstream 239 11633912 ~ 11634481 (+)
G209410 NA non-coding downstream 75055 11708728 ~ 11708936 (+)
LOC113528367 NA non-coding downstream 174588 11808261 ~ 11822910 (+)
G209775 NA non-coding downstream 386190 12019863 ~ 12021132 (+)
G209798 NA non-coding downstream 427896 12061569 ~ 12061782 (+)
luc7l3 luc7l3,LOC107674472,LOC107726809,LOC107654661 other upstream 48459 11567119 ~ 11577823 (+)
cdc42ep4a LOC108256079,LOC108432235,LOC103033379 other upstream 238262 11280080 ~ 11388020 (+)
G208781 cacng4b,LOC108259704,LOC106606650,LOC107565862,LOC107691234,LOC106601773,LOC107724746,LOC107713946 other upstream 844823 10349402 ~ 10781459 (+)
rapgefl1 rapgefl1,LOC107717207,LOC107662398,LOC107740631,LOC107667751,LOC107585050,LOC106600822 other upstream 1638509 9944306 ~ 9987773 (+)
nupr1b nupr1,LOC108413333,LOC107660958,LOC107739393,LOC107567154,LOC100692788,LOC103393451 other upstream 2562869 9061563 ~ 9063413 (+)
tbc1d16 tbc1d16,LOC107559246,LOC107689993,LOC107670685,LOC107562324 other downstream 415734 12049407 ~ 12086058 (+)
LOC113528416 LOC108275780 other downstream 501596 12135269 ~ 12140371 (+)
arhgap17b LOC108279379,LOC108432202 other downstream 525030 12158703 ~ 12190070 (+)
ndufb10 ndufb10 other downstream 733893 12367566 ~ 12374372 (+)
znf653 znf653,LOC104961106,LOC107553636,LOC103393609 other downstream 1801708 13435381 ~ 13445686 (+)

Expression


Co-expression Network