LOC113527904 (lgals3bp)


Basic Information

Item Value
gene id LOC113527904
gene name lgals3bp
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 14476246 ~ 14478966 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026916071.2
CTCCTTCTTTATGTTTTCTGTGAAACGAAACTTAGTGCAGCTCAGTGCTCTGACTGAACACTAGTGGACCTATACAAAGGAGATTTCATGCCATAGGTTTCATTAGTCCTTCTTATTACTCTAAAGtttCTCCTAAAATGGTGTCATCTAGAATTTGTTTTGTCATCTGGACGCTGCTGTCTCTTCATGTCTCCACACAGGGCTGGAATCTATTTGATGTCCAGAAAAAGGGACCACCCGTGGAGGGTGGATTGCGGTTGGTGGGAGGTGACCTGCCCAATAAAGGTCGCGTGGAGGTGTACCACGATGGCCAATGGGGGACAGTCTGTGATGATGGTTGGACCCTGAATGAGGCCCAGGTAGTGTGCCAGCAGCTTGGTTTCCCTGGAGCTGTCTCAGCCATACCAGGAGGAACATTCGGAGAAGGTTCTGGTCCTATTTGGCTTGATGATGTGAACTGCAAGGGATCAGAGAGCTTTTTGTCCAGCTGTCATTTTAAAGGCTGGAGTGTTACTGACTGTGCTCACAAAGAGGATGCAGGGGTGGTCTGTGAAAGTGgaAAAGATATGGACAACAGCCGTAAGTTCCAACTGGACCACAGCCTGGGTCTGTCTGAAAAGCTCGGGAGACTTTTTGATAGTGGGGACAACTGCGATTTCAGCGTTCTGGTCCGTGACCCCAGTGATGACCAAGCTGGACAGAAGACAATTTGTGTCCATAGGctaattttctctctctaccctcaatttaatatttctaataGCTCTAACAACCTCACAGTTGAAATTAGCGAAGTCTGCCATCCCCATATCTCCAGCTTCTTGAGGTATCTGTACACACGCAAGATTGACGTCACCATCTCTTCAGCCCAGTGCCTACACCAGCTATCCTATATCTACCAGTTGGAGCAGCTGTTGGAGGAGATAGGCAAAGTCTTTACTTTGCTCCTTCCTCAGGACAGTACCTTCCGTACCCAAGTGTCCCTGTATGAGTATGGTGTCCGTACAAAGGACATGCTGCTTCAGGAAAATGTTCTTCAGTACCTCTCCTGGAACTTTGAATTCCTTGTTGACTCTACGGCATGGAAAACTGTCTCCATACATATGATGAAGGCACTTCTGTCTCGTTCAGATTTAGTGGTGAAAGATGAGTTTTTTGTGCTTCAGGCTCTAGAAGACTCAATTAAAATGAAAGGAGAGACAGTTAGTTTAGAAGACAAGGTCAGCCTACTGAGTCACATTCGCTTCTCCATGATTCCAGTAGAAAAACTTTATGATATTCAGTTCAGCTCAGGCATGTACCAAAGCAATGAAGCATTTTATCACAGGGCTTTGCTGAAAGGCTTCCTATTCAATACACTGGCTTTCTCAAAGATCAAAGAACGTTTTAATAACTTCGAAGACTATCAGCCCAGGATCTACACTGCTGAGCCATGGGCCACTGCCATCAATGACacttccaacagtggctataacTCTCATTATAATTATAGGTATGGTTCTGGCTCTAATCCTGTCTCATTTACGACTCCTGCCCATAACAGTGTGATTTACAGGCAGCAAAAAATCAATTGGCTAGTGCAGGTTCTTCAGAATAGCTGGGAATGCTCTAACCAAGGTTTCTACTGTGACTCTTTGCCTGTAGCCAGACTCTATAGCCAGTACAGCCTGAATAATTATGAGACAACTATTCGCTACAACAACAAGTTAATTCTCTCATGCAAGGCTGAAAACATTGTGTTCCATGTCCAAGATTTTAAAAGTGGCAAAGCTATAGTTCCAACCAACAGCACTTTGGGTCTACCCCATCCCTGCCCTGATGACTATAGATTTACTTTTGTTGTGCGTCCAGAGTACATCTGATCGCATTCGCCTGCACACAGGGTCTCTGCTTGAAATTTtgtttcacttttctttctATCAAGTTAGTGGCATACCAATGTTAGTGATttctttcagtatttcagtaaacATTTCTCAACTGTCAATGTGAAAAAATCAACATGATCAAATTAAAGGTTGATGAACTTCA

Function

symbol description
lgals3bp Predicted to enable scavenger receptor activity. Predicted to be involved in cellular defense response and signal transduction. Located in extracellular space. Colocalizes with collagen-containing extracellular matrix.

GO: NA

KEGG:

id description
K17300 LGALS3BP; galectin-3-binding protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026916071.2 True 2031 mRNA 0.44 6 14476246 14478966

Neighbor

gene id symbol gene type direction distance location
LOC113528183 LOC108275544 coding upstream 12764 14461356 ~ 14463482 (+)
im:6904045 NA coding upstream 29083 14443634 ~ 14447163 (+)
LOC113527900 LOC108275579 coding upstream 33914 14432724 ~ 14442332 (+)
rasd4 zgc:153845,LOC108435855,LOC103035404,LOC106601411,LOC106606999 coding upstream 99797 14375095 ~ 14376449 (+)
LOC113528345 mgat5b,LOC108274344,LOC108435872,LOC107743022,LOC107562046 coding upstream 164695 14229822 ~ 14311551 (+)
timp2b LOC108277022 coding downstream 12422 14491388 ~ 14499569 (+)
usp36 usp36,LOC107717487,LOC104948677 coding downstream 22342 14501308 ~ 14527529 (+)
cyth1a cyth1,cyth1a,LOC106920077,LOC108277039,LOC107552117,LOC103392816,LOC104925066 coding downstream 55607 14534573 ~ 14601007 (+)
hid1a hid1,LOC107710705,LOC107698779 coding downstream 400000 14878966 ~ 14899732 (+)
ush1ga ush1g,ush1ga,LOC107556601,LOC107698769,LOC107568596,LOC107664446 coding downstream 433223 14912189 ~ 14920677 (+)
G211058 NA non-coding upstream 9572 14466438 ~ 14466674 (+)
G211032 NA non-coding upstream 42191 14433827 ~ 14434055 (+)
G211031 NA non-coding upstream 42951 14432370 ~ 14433295 (+)
G211006 NA non-coding upstream 96349 14378543 ~ 14379897 (+)
G210784 NA non-coding upstream 486353 13987875 ~ 13989893 (+)
G211076 NA non-coding downstream 2847 14481813 ~ 14482016 (+)
G211101 NA non-coding downstream 83554 14562520 ~ 14563021 (+)
G211117 NA non-coding downstream 125751 14604717 ~ 14692759 (+)
LOC113528421 NA non-coding downstream 164750 14643716 ~ 14644243 (+)
G211208 NA non-coding downstream 235705 14714671 ~ 14714875 (+)
zgc:158403 zgc:158403,LOC108258290,LOC108441004,LOC107718630,LOC107553678,LOC107661656,LOC107695678 other upstream 982304 13464085 ~ 13493942 (+)
znf653 znf653,LOC104961106,LOC107553636,LOC103393609 other upstream 1030560 13435381 ~ 13445686 (+)
ndufb10 ndufb10 other upstream 2101874 12367566 ~ 12374372 (+)
arhgap17b LOC108279379,LOC108432202 other upstream 2286176 12158703 ~ 12190070 (+)
LOC113528416 LOC108275780 other upstream 2335875 12135269 ~ 12140371 (+)
socs3a socs3 other downstream 140238 14619204 ~ 14621788 (+)
LOC117598752 NA other downstream 509120 14988086 ~ 14991450 (+)
G211913 NA other downstream 1439251 15918217 ~ 15968759 (+)
LOC113527983 sstr5,sstr2,LOC108260271,LOC103373483,LOC107083133,LOC104918336,LOC102291375 other downstream 1661364 16140330 ~ 16146326 (+)
srl srl,LOC108261333,LOC107695714,LOC107661647,LOC107718567,LOC107553668 other downstream 2608318 17087284 ~ 17113156 (+)

Expression


Co-expression Network