baxa (bax)


Basic Information

Item Value
gene id baxa
gene name bax
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 5081588 ~ 5087023 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026916072.2
TGTGCACTTCCGGGTACGCCCTTCTTCCTGCCCCTAACATTTGCGTCACTCGAGGCGGAAGTCTAGTGTAATTATTTTTCACGCGAACATGGCAGCAGCGCTATCAGGAGAAGGCGATGCGGGCACCATCAATGACCAAATACTAGAAGTAGGAGCGGTGCTGCTGAGAGATTTTATTTATGAGCGAGTTCGTCGTCATGGGGACAGCGATGCTGTTGTATCGAGGAACGAACTGGGCGGGAGTGAGCTGTGTGACCCCAACCATAAGAAACTTGCTCAGTGTTTACAGCAGATTGGAGATGAGCTGGACAGCAATGTAGACCTGCAGAGAATGTTAGCCAATTCATCGCTCCAGCCAACTAAAGACGTGTTTCTGAAGGTGGCATGCGAGATTTTCTCGGATGGGAAGTTTAACTGGGGCAGAGTGGTGGCGCTTTTCTACTTTGCTTGTCGACTTGTGATCAAGGCTCTTGTGACAAAAATTCCTGACATCATCAGAACCATCATCAACTGGACTCTGGACTACCTGCGGGAAAATGTGATTAATTGGATTAGAGAACAGGGAGGCTGGgaggGGATCCGCTCTTACTTTGGCACACCAACCTGGCAGACCATTGGCGTCTTTCTGGCCGGAGTTCTCACCACTGTGCTGGTCATGCGCAagatgtgaaaagaaaa

Function

symbol description
bax Enables several functions, including BH3 domain binding activity; channel activity; and protein dimerization activity. Involved in several processes, including apoptotic signaling pathway; mitochondrion organization; and positive regulation of apoptotic process. Located in several cellular components, including endoplasmic reticulum membrane; mitochondrial outer membrane; and nuclear envelope. Part of BAK complex; BAX complex; and mitochondrial permeability transition pore complex. Colocalizes with cell periphery. Implicated in acute lymphoblastic leukemia; ataxia telangiectasia; colon adenocarcinoma; and colorectal cancer. Biomarker of several diseases, including osteoarthritis; reproductive organ cancer (multiple); stomach cancer; teratoma; and urinary system cancer (multiple).

NR:

description
PREDICTED: apoptosis regulator BAX-like

GO:

id name namespace
GO:0043065 positive regulation of apoptotic process biological_process

KEGG:

id description
K02159 BAX; apoptosis regulator BAX

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026916072.2 True 678 mRNA 0.50 6 5081588 5087023

Neighbor

gene id symbol gene type direction distance location
gpatch8 gpatch8 coding downstream 32770 5015567 ~ 5048818 (-)
arf2a arf2a,arf2b,LOC103045652,LOC108427419,LOC105013206,LOC107554546 coding downstream 115962 4952096 ~ 4965626 (-)
si:ch211-278a6.1 srcin1 coding downstream 145607 4773679 ~ 4935981 (-)
tubg1 tubg1,LOC107721485 coding downstream 391091 4671755 ~ 4690497 (-)
cntnap1 cntnap1,LOC107721486,LOC107654512,LOC107720006,LOC107601289,LOC107590375,LOC107688128 coding downstream 490923 4563378 ~ 4590665 (-)
mpp3a mpp3,LOC107720025 coding upstream 570814 5657837 ~ 5691272 (-)
si:ch211-198m17.1 NA coding upstream 611064 5698087 ~ 5730023 (-)
znf281a LOC108260862 coding upstream 670121 5757144 ~ 5777225 (-)
svilc LOC108281065 coding upstream 810537 5897560 ~ 5931876 (-)
cdk21 LOC108274791 coding upstream 847017 5934040 ~ 5938431 (-)
G205628 NA non-coding downstream 24472 5056910 ~ 5057116 (-)
G205558 NA non-coding downstream 253042 4828253 ~ 4828546 (-)
G205541 fmnl1a,LOC108278868,LOC107720013,LOC107721528,LOC107654518,LOC107590427,LOC107688135 non-coding downstream 310744 4766737 ~ 4770844 (-)
G205488 NA non-coding downstream 380625 4699200 ~ 4700963 (-)
G205484 NA non-coding downstream 521166 4553297 ~ 4560422 (-)
LOC113528378 NA non-coding upstream 193707 5280730 ~ 5284905 (-)
G206164 NA non-coding upstream 544692 5631715 ~ 5631919 (-)
G206210 NA non-coding upstream 634611 5721634 ~ 5727680 (-)
LOC113528476 NA non-coding upstream 865775 5952798 ~ 5953504 (-)
LOC113527891 NA non-coding upstream 1100451 6187474 ~ 6189926 (-)
mlx mlx,LOC107721525,LOC107601295,LOC107720011,LOC107590371,LOC107654516,LOC107688133,LOC106601136 other downstream 346686 4722417 ~ 4734902 (-)
dcaf7 dcaf7,LOC100702343,LOC105030232 other downstream 963945 4092913 ~ 4117643 (-)
G205173 gfap,LOC103392664 other downstream 1037013 4040481 ~ 4044575 (-)
kcnc3a kcnc3a,LOC108259249,LOC107729449,LOC108427388,LOC107693499,LOC107548332,LOC105891716 other downstream 1215739 3768855 ~ 3865849 (-)
nde1 nde1 other downstream 1667821 3382831 ~ 3413767 (-)
G205633 rps11,LOC102786880,LOC107674708 other upstream 2313 5089336 ~ 5091922 (-)
G206236 NA other upstream 667744 5754767 ~ 5756733 (-)
G206282 NA other upstream 754114 5841137 ~ 5841477 (-)
retsat LOC108257121,LOC108432054 other upstream 853839 5940862 ~ 5950997 (-)
LOC113528542 NA other upstream 866710 5953733 ~ 5961050 (-)

Expression


Co-expression Network