cd2bp2 (cd2bp2,LOC107554127)


Basic Information

Item Value
gene id cd2bp2
gene name cd2bp2,LOC107554127
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 3214486 ~ 3218927 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026916075.2
AAGTAATAAACTCCAGCATGCGAAGAAGAAGACGCAGCAGTACGTAATATGTCATTTCCGTTTGTAGGTTGAATGGCGCAGAGGGAATAGCAACCAAAACATCCAGAATGTCCAAAAGGAAAGTCACATTTCAAGATGGTGATGAGGAGTTTAGTTTGGATGACGAGGTACCGAAAAAGAagATGTATGATGAGGTGAGTGGACCCGGCTCGAGGTTTAAGGAGAAACACTCTCTGGACAGTGATGAGGAGGACGAgggagaggatggagagaaggaCAGTAAATACAACATCCTGGCCAGCGACGATATCGAAGgtcaggAAATGGCCACGATCGACTGTGATGAAGGAGTTCCCATCACACTTTTCAACCTGAAAGAAGAAATGGAGGAGGGTCACTTTGACTCGGAGGGAAACTACTTcatcaagaaagagaaagacatcaGAGACAACTGGCTGGACAACATCGACTGGGTAAAAATCAAAGAGCAGCcggtgaaaaagaaaaagaagggacTCTCGGCTAAGCGTCGTCGCCGACCCGGAGATGAGGACGAGgctgaggaggagagacagagggaggagaaACAGGATGAGAACGAGGaagaagatgaggaagaggaggagagcgaGGCTCAGGAAGACCCGCTGGCTTCGTTCACACTGTATCAGCTCAAGGAGGCCGTGGTGAACCTGCTGCAGCCTGGAGAGACCGTCTCTGCCGCGCTCCGCCGACTCGGAGGACTGGGAGGACGGAAGAAAAAGGGACGAGCGCGGGACGGAGGGGAGGATGAGAAAGACGAGACGTCGATCAGAGACACGGAGAAGCTGGACAGGCTCACGGCGCTGGCCGACAGACTGGTGGTACTCGGAGAATACGAGATTTATCAGCAGACTTATGAAAAACTGGCGTACAGGCTGAAAGGCATGCAGCAGCCTGAAAGAGACGCGGCGGCCAAACAGAacgaggaggaagaggacgagCTTGACATGTTCGCTGATCAGTTTGACGAGCAGCACGGCAAGAAGAAagatgagaagaagaaggacgAGGAAGCAGATAGTGGCTTAGtgaGCGATGAGGTGATGTGGGAGTACAAATGGGAAAACAAGGAGAACTCTGAACTCTACGGACCCTTCAGCAGCCAGCAGATGCAGGACTGGGTCGATCAGGGCTACTTTAAAGACGGCGTGTACTGCAGACGGGTCGATCAGGAGGGCGCGCAGTTCTACAACTCCAAAAGACTGGACTTCGAGCTTTATACGTGACTCGCTCACGTCCTCCGTTACTTCATTTTCAACACTTGCAGTGCATTTTTAATGtgagatttattcccccttatctgcatttgttttatgtgtgtgtgtgtgggtttttttttgctgatatcCATGTGTATTAAACAGCCAGATTAAATGTTTGCTATCATCACACCATTTGATACCatgtacatttgttttaaaataaagattttggTGGCTGGCCAGA

Function

symbol description
cd2bp2 Predicted to be part of U5 snRNP. Orthologous to human CD2BP2 (CD2 cytoplasmic tail binding protein 2).

NR:

description
CD2 antigen cytoplasmic tail-binding protein 2-like

GO: NA

KEGG:

id description
K13099 CD2BP2, PPP1R59; CD2 antigen cytoplasmic tail-binding protein 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026916075.2 True 1488 mRNA 0.49 7 3214486 3218927

Neighbor

gene id symbol gene type direction distance location
prr14 NA coding downstream 551 3200147 ~ 3213935 (-)
rusf1 c2h16orf58,cunh16orf58,LOC102793205,LOC107577286 coding downstream 23469 3182985 ~ 3191017 (-)
rpl3 LOC100304518,LOC103392522,LOC108434904,LOC103374755 coding downstream 55223 3154981 ~ 3159263 (-)
LOC113528657 NA coding downstream 57777 3156617 ~ 3156709 (-)
LOC113528655 NA coding downstream 59056 3155296 ~ 3155430 (-)
LOC113528532 tbc1d10b,LOC107737756,LOC107554125,LOC107582992 coding upstream 28774 3247701 ~ 3271970 (-)
abcc1 abcc1,LOC107654509 coding upstream 134238 3353165 ~ 3396356 (-)
gspt1l gspt1l,LOC100304847,LOC108438004,LOC107721494,LOC107654506,LOC106529451,LOC104930119 coding upstream 197472 3416399 ~ 3435123 (-)
pdxdc1 pdxdc1 coding upstream 218632 3437559 ~ 3467406 (-)
si:dkeyp-72e1.9 LOC108255663 coding upstream 283108 3502035 ~ 3525105 (-)
G204664 NA non-coding downstream 40209 3171262 ~ 3174277 (-)
G204524 NA non-coding downstream 181258 3028815 ~ 3033228 (-)
G204518 NA non-coding downstream 243617 2965883 ~ 2970869 (-)
LOC117598767 NA non-coding downstream 614134 2599709 ~ 2600352 (-)
G204317 NA non-coding downstream 672961 2541126 ~ 2541525 (-)
G205038 NA non-coding upstream 382075 3601002 ~ 3602239 (-)
G205030 NA non-coding upstream 398244 3617171 ~ 3620119 (-)
G205040 dus1l,LOC102781131 non-coding upstream 411767 3630694 ~ 3631383 (-)
G205063 NA non-coding upstream 485356 3704283 ~ 3738959 (-)
G205145 NA non-coding upstream 729922 3948849 ~ 3957710 (-)
si:dkey-283b1.7 LOC108276203,LOC107737768,LOC104929916,LOC106607185 other downstream 136468 3073977 ~ 3078018 (-)
si:dkey-283b1.6 NA other downstream 174834 3034246 ~ 3039652 (-)
LOC113528062 LOC108276032,LOC108276106 other downstream 676375 2433149 ~ 2538111 (-)
LOC113528223 LOC108276032,LOC108261353,LOC108261342 other downstream 869574 2331676 ~ 2344912 (-)
ifi35 ifi35 other downstream 1018946 2112445 ~ 2195540 (-)
nde1 nde1 other upstream 163904 3382831 ~ 3413767 (-)
kcnc3a kcnc3a,LOC108259249,LOC107729449,LOC108427388,LOC107693499,LOC107548332,LOC105891716 other upstream 549928 3768855 ~ 3865849 (-)
G205173 gfap,LOC103392664 other upstream 821554 4040481 ~ 4044575 (-)
dcaf7 dcaf7,LOC100702343,LOC105030232 other upstream 873986 4092913 ~ 4117643 (-)
mlx mlx,LOC107721525,LOC107601295,LOC107720011,LOC107590371,LOC107654516,LOC107688133,LOC106601136 other upstream 1503490 4722417 ~ 4734902 (-)

Expression


Co-expression Network