nme4 (LOC108276282)


Basic Information

Item Value
gene id nme4
gene name LOC108276282
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 13662163 ~ 13669491 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026916077.2
tgtgtgtgtgtgtgtgtgtgtgtgtgttttgatcaCTGTTAGCTGCTCTGACAGAAGAAAACCTCAGAGCTCTCTCAGTAGTACATTGACGCGCTTCCTCTATAGAGTTTTGACCTCCAGAAGACTTAGTGTGACACATTTTTGTGTAGTGATGGCGGGTGTAACACGGTGCGTGTTGAAGCGGTTTCTCATGAGCAGCGGGAAACGGATCTTCCCGCAATCCACAGCAGCCCTGCGGGCTCAGCTACAGACGCACGCGCGGACCAGCAGCAGCGcctcagACATTCCTGGTGTAAAAGAGCGCACTTTGGTTGCCATCAAGCCGGATGGGGTTCAGAGgcgtctgattggtcagatcaTTAAACGCTTTGAGCAGCGAGGGTTCCGCTTGGTAGGTCTGAAGATGGTGGAGGTATCTGAAGAATTACTGGCCCAGCATTATGTGTCTCTTCGTAAGAAACCATTCTACCCCAGTGTACTGCAGTATATGACCTCAGGGCCTGTGGTGGCAATGGTGTGGGAGGGCCACAATGTAATAAAGTCAACACGTATGCTAGTGGGAGACACAAACCCAGCTGAAGCTGCACCTGGAACTCTGAGAGGAGACTTTAGTGTTCATGTTAGCAGGAACGTTGTGCATGCCTCTGACTCGCCTGAAGTAGCACAAAAAGAGATCTCGCTTTGGTTTCAACGCTCCGAGTTGATTGACTGGGTGTGTTGTGACCATGGCAACATCTACCATCCATGAGTGTGTGCTTGTGAATGTTAGTTATACCTCTTAATACTTTTagagaaaattattttaaaaagattttaactctgcaatgtatattttaatcatgttcCAGAAATTTTGGTCATATATTTCCTGAATAgtttgccaaataaataaaatctatttcaaATTCACAGTATTATAAAAGAATGTTCAAAGTTTGAAGCCAAAGCATCCGATGTTTCTTAATGAATCTGTAAATTTTGCACAGGAACAACACTGTACAAGTGATCTAACAAAACAACTGCACATTACTGTAATACCAGCTATAAATGATTATGcctttgtaataaatattttaatactctatattattatatttggtTCAATTATCCATTACATGAAAATCccaaatctgaaataaaacacacaaaattgtaAAGATTGTTGGAAATCAGCCACCACTGCACAGTGGACTGTGTGTAAAATGAGCTGGCAATAAATTAATGGTCAAATGAG

Function

NR:

description
nucleoside diphosphate kinase

GO:

id name namespace
GO:0006165 nucleoside diphosphate phosphorylation biological_process
GO:0006183 GTP biosynthetic process biological_process
GO:0006228 UTP biosynthetic process biological_process
GO:0006241 CTP biosynthetic process biological_process
GO:0005524 ATP binding molecular_function
GO:0004550 nucleoside diphosphate kinase activity molecular_function

KEGG:

id description
K00940 ndk, NME; nucleoside-diphosphate kinase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026916077.2 True 1234 mRNA 0.42 5 13662163 13669491

Neighbor

gene id symbol gene type direction distance location
gadd45gip1 gadd45gip1 coding downstream 164000 13494986 ~ 13498163 (-)
swsap1 swsap1 coding downstream 226807 13432227 ~ 13435356 (-)
LOC113528569 NA coding downstream 393989 13241850 ~ 13268174 (-)
nfil3-6 LOC108279453 coding downstream 435288 13223244 ~ 13226875 (-)
nfil3-2 nfil3 coding downstream 442141 13210369 ~ 13220022 (-)
xpo6 xpo6 coding upstream 1418 13670909 ~ 13695259 (-)
antkmt fam173a,LOC108276247 coding upstream 27122 13696613 ~ 13702527 (-)
LOC113528466 LOC108276218,LOC108441001 coding upstream 44909 13714400 ~ 13715455 (-)
LOC113527894 LOC108278278,LOC108412261 coding upstream 94404 13763895 ~ 13809443 (-)
zgc:112183 rab37,zgc:112183,LOC108278300,LOC107665712,LOC107654586,LOC106606976,LOC105012908 coding upstream 146235 13815726 ~ 13833885 (-)
G210858 NA non-coding downstream 1349 13591439 ~ 13660814 (-)
G210690 NA non-coding downstream 136583 13525381 ~ 13525580 (-)
LOC113528343 NA non-coding downstream 186701 13463539 ~ 13475462 (-)
G210640 NA non-coding downstream 215725 13445736 ~ 13446438 (-)
G210607 NA non-coding downstream 256806 13405139 ~ 13405357 (-)
G210886 NA non-coding upstream 54060 13723551 ~ 13726829 (-)
G210888 NA non-coding upstream 62928 13732419 ~ 13786511 (-)
LOC113527951 NA non-coding upstream 70578 13740069 ~ 13747999 (-)
G210877 NA non-coding upstream 89035 13758526 ~ 13824293 (-)
G210915 NA non-coding upstream 199708 13869199 ~ 13869573 (-)
LOC117598755 NA other downstream 262938 13395466 ~ 13399225 (-)
elof1 elof1,LOC103393660,LOC100703874,LOC106589640,LOC103384163 other downstream 266706 13390616 ~ 13395457 (-)
tom1 LOC108260160 other downstream 1102950 12546333 ~ 12559213 (-)
msrb1a msrb1 other downstream 1322894 12333854 ~ 12339269 (-)
LOC113528332 hs3st6,LOC102795972 other downstream 1346665 12297776 ~ 12315498 (-)
xylt2 xylt2,LOC107748866,LOC107665700,LOC107654585 other upstream 171675 13841166 ~ 13871131 (-)
mcrip1 mcrip1,fam195b,LOC107654575 other upstream 324385 13993876 ~ 14001037 (-)
LOC113528401 ppp1r27a,LOC108279187,LOC107748880,LOC107558871,LOC107654574,LOC107665625,LOC107548727,LOC107743019 other upstream 334678 14004169 ~ 14006512 (-)
pecam1 LOC108279165 other upstream 348124 14017615 ~ 14029641 (-)
G211151 usp36 other upstream 850786 14520277 ~ 14520975 (-)

Expression


Co-expression Network