ccnf (ccnf,LOC103461596,LOC107683020)


Basic Information

Item Value
gene id ccnf
gene name ccnf,LOC103461596,LOC107683020
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 16737941 ~ 16752068 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026916081.2
TCCACAACTCAAGCTGTGTGCATGAAGTTAAACAGTCCAACACTTAACTCTTCTGTTAGCGCCCAGTCTCCAACAAGCAGCAcaaaattcattaaagaacgTAAAGTAAACTTTACTAATTCTGTAAATACTCACTTTGGGGAGTGTTGTCTGTGGCAGCGGATAGATCTTCTCTTGAAATGAAAGCGGGCGTGCTACACTGTGGATGCCATAAATGTTCCTCTGTGCCTGCGAGGAAGCGGGTCCGAAAGCAGGTCTCGTCTCTGGGCCTCCTGTCTCTACCTGAGGAGGTGCTGCTTTGTGTCCTCCAGTGTCTCTCAGCTGAAGACCTGCTCGCCGTCAGAGCTGTGCACTCTCATCTCCGTAATATCATCGACAACAACTCGAGTGTTTGGGCACGGGTCAGCTTCAAGGACCGCTGGCCAGCCCCGGACACTGTCTGGCTCTTTGAGAGGGCTGCAGAGAAAGGAAATTTTGAGGCTGCAGTAAAACTAGGAATTGCGTATTTGTACAATGAAGGACCGTCACTCAGCGATGAGGGCCGGGCCGATCTCTGTGGCAGGATGGCTGCAAAATTCTTCACCCTGGCCGAGCGTGTGCGCTCGCCGCTGGCCGATCCCTTCATCTGGCTCTTTATCCGGCCGCCATGGTCTCCCTCTGGAAGCTGCTGCAAGGCTGTGGTGTATGAGCATCTCAAAGCAGAGTGTGAGAGCAACTTGgagaggagaggagcgCTACTGCATTGCCTGGCTAGAGTCCTTGAGCTGTCTGATgaTGAGGAGACGCGCTCGGGAGCTCTTGCTGTTTTGGACGAGTCGTCGTGCTGCGGCAGCGTGCAGAGCTCGTACCTCCTGTGGGAGAAAAATCGCCACATGGCTatgaCCGACCCTGGCAGATATCTGCAGTGTGTGCGCGTTCTCCGGGATTATGCTGCTAAGGGCTGCTGGGaagctcagTTGTCTTTAGCAAAGTCATGTGCCAGCGGCAATCCTCTGGGTTTGGAGCCGCGGGCCTGTGCTGACCTGGTGGCtcaattctttctttcctgtccATCACCACCACGACGCTCTGACAGCCCACACAAAGAGGGCATCAATGACACCATGAGGTACATCCTGGTGGACTGGTTGGTGGAGGTAGCCACCATGAAGGATTTCTCCAGTCTGGCACTGCATGTGACTGTGGGCTGTGTGGACCGCTACCTGGCCCGACGCTCCGTGCCTAAGGCTAGGTTACAGCTTCTGGGTATTGCCTGCATGGTCATCTGCACACGgtatatcagtaaagaaatTCTGACCATTCGAGAGGCTGTGTGGCTCACTGATAACACGTATCAGTACGAGGACCTGGTCAGGATGATGGGGGAGGTCATCTCTGTGCTGGAGGGGAAGATCCGAACTCCCACTCTGCTGGACTACGGTGAGGTACTGCAGTCTCTACTGCCCATGCAGCGCCGCACTGCTCATCTCTTCAGCTACATCTGTGAGCTGTCTCTGCTCTTCTCCCCTCTCACGGCGCCTGGTCCTGCTCGCCTCGCCAGTGCCACCCTGCTGCTCACCCGAGCACTGCACAACTACACTCCTGTATGGCCGAGTCTGCTGGTGGAGAGCACAGGTTTTACTGAGCAAGACCTGGTGCCCTGTGCTTTGCTGATCTACATTAAGTGCTTCAGCCAGGATGTGCCAAAAGATTACAGACAAGTGTCCTTAACTGGTGTTAAGCAGAGATTTGAAAGTGACTTCTACCAACATATAAGCAAAGACACAGTAATGGACTTTAAGGAACTGTGCCAGGTGCTGGAGGTTCCAGAGGTGGAGCCCCAAATTGAGCATCCTAGTGCTAACAGTCAGTCAGCAGACATCCACACATTCCTGTCCTCTCCATCCAGCAACAGCAAGAGGAGGGAGGATAGCATGCATACCCATCGAGGCAGCTTTgtggccacacccacagctgaGCTGTCCAATCAAGAGGAAACCCTTGTGTGTGACATTCTAGACTGGAGCCTTGATGCTTCCTGCTCAGGCTATGAGGGAGATCaggagagtgatggagagaaagagtgtgaagTCTCTGTCTTCTCAGTCCAGCTACCTCTGTGTGTGCAGTCTGCTGATGTACGGCTGCACTGCGGTGCTCTTTCTAGCGATGAGGACATGGGTGAGCCTGCTGCCTCCTGCTCTTCCTTTTCCTCCAAACGCCCGCTCCGCATCAATCTCCACAGCTCTGGATACTCTTCTGTCCAGAGCAGCAGTCCTTCCACTGCCTCTTCTTCCTCCCAGGTGCCCTGCCATCTCTCCCCAGTCAGCCTGGCACCAGCATCAGTGCCCGCCTCACCCGGCTTCCGTCTGCTGGTGCCCATGCAGAGACCCTGTGGCTCCACCCACCGGCAGGTGAAGAGGAAGAACACGGCAGCCCACAGTGGCGGAGAGATGGAGCTGGAAAGGGGAAATGGTGAGATCTCTGCGGATGAACAGGCTTTCCTTAGCTTGTGACTGAACAGTTGGCTCCAGCAGCCATGTCTGAGGTTAAGGGTGCCACTGTAACCTCCGTGCCTCTGAGAAGCAATCAAATGGCAGCTTTTCAAATCCTGTACAACTTGTCCACTATGAGCTTTTAAGGAATCTTCAAAACCTACAATGCTAACAATCAATAAGAGTTCACTGGGGACCAGTTAGcattatgtaaataaaagttTACTACCTGGCCTAAGCAGCTTTCATTCATTGTTAGCTGTTTGTATACTTGGATGGAGTGTCCCATTAAGACAAAGGGATAGAGAGGAAGAACAACGCTGATGGTCCTGCTTGGGTCCTGTCTGTTTCaccttgtgttgtgttgaaTTACATGTAGAAGACTTTGGGAACACCTCCTCTACAGGGTCACTTGCCGATTCATTTCCCAACAATTAAACCACTGGAATTCTTGAAAAAGGTCTGCTTGTGaacctgtgtgtctctgtgagaCCTGAGCCAAATGAACAGACTATTACAACAACCTCACGTTTCAGCCACCAGAGAAAATCAAAGACTATCTCAGAATTTACATTCATATggttacatttatatatatatttttttactggACAGAAAGACTTTAAATATCCAGGTACTGAGAGCTGTCAAAATACAACTGTTTCACTGAACTCTCTTCAGGGCACTGACGTATTTGTTTCTTTGGACTGCTGTTATGTGGAAGAGTAAATTATACTTTACatgtttttgtatgtatatgtgctATGTGCCTTTTCCATCATTCTAATGATTTGTGTCTTGTGCCATGTTCTGATGCCAAAGGTGTTATTATTTTCAAGTGTGGTCAAGTTATTATACTTGTACTGTAACATttcatacagcatacatactgCAAACGGTGCTGAATGTGATAGCATTATTTCACCTGTGATAAGTTTTTAACATTATGGGATAACACAGAAACTGTGTTGCAACAGTTTTAATGCACAATATCGGACATGTCGTTTCTTCATAACCTCAAATGAAGCaaagcactttttattttacaacaCTGGACAAGCAGTGTTCCTAAACAGCTGTGTATGTCTTTAGTGAAAAATCAATTACATGTATGTGTTATTCAGTGCTCTACAATAGAAATGTTCCTGCATTTCCAAAACATCACAACCCATGAAATGATTCTTAATGCATCTTTTCAGTACTGTAACttcattagatttttttttgtaactgtaactgaTTTTCATACCTATGTATATGTATGAAGCTGTGAAAAACCACTACTTGAAACCTATAGATCCATAGATGTTTGAGAAGTGTtttcaaaaacaataaaataatgctgcagtaagacttttttccccatctgaTTTCAGTAGAAAATATTTCCTGCAGACTGAATAGCAATAAGCCACATTTATATGTAGTTTCATATCTGATTAAAGGATATGAAAATCAGGTTAGATtgtacatgctttttttttccattttgtgcaCAGCACTTCTCAAGAATTTGCATTAAGAACAACGTGGACAAAACCAGCAGGAAGGCAGGTCAAAGGAAGGTCACAGACTGTATATTA

Function

symbol description
ccnf Predicted to enable cyclin-dependent protein serine/threonine kinase regulator activity. Predicted to be involved in several processes, including cellular protein metabolic process; negative regulation of centrosome duplication; and regulation of cyclin-dependent protein serine/threonine kinase activity. Predicted to act upstream of or within cell division. Predicted to be located in centriole. Predicted to be part of SCF ubiquitin ligase complex and cyclin-dependent protein kinase holoenzyme complex. Predicted to be active in centrosome; cytoplasm; and nucleus. Is expressed in several structures, including margin; nervous system; optic vesicle; tail bud; and ventral mesoderm. Orthologous to human CCNF (cyclin F).

NR:

description
PREDICTED: cyclin-F isoform X1

GO:

id name namespace
GO:0005634 nucleus cellular_component

KEGG:

id description
K10289 CCNF, FBXO1; F-box protein 1 (cyclin F)

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026916081.2 True 4057 mRNA 0.48 17 16737941 16752068

Neighbor

gene id symbol gene type direction distance location
abca3b abca3,abca3b,LOC107742093 coding downstream 1184 16691510 ~ 16736757 (-)
LOC117595684 NA coding downstream 49342 16671145 ~ 16688599 (-)
LOC113528100 LOC108276786,LOC108438908 coding downstream 60107 16671145 ~ 16677834 (-)
LOC113528041 LOC108276772 coding downstream 103204 16615091 ~ 16634737 (-)
LOC113527963 rnps1,LOC108411755,LOC107553655,LOC103909923,LOC107673212 coding downstream 192301 16538381 ~ 16545640 (-)
LOC113527928 LOC108259859 coding upstream 18230 16770298 ~ 16779653 (-)
dnaja3a dnaja3,LOC108431932 coding upstream 68172 16820240 ~ 16829084 (-)
vasnb LOC108276517 coding upstream 157845 16909913 ~ 16931628 (-)
glis2b LOC108276531 coding upstream 222653 16974721 ~ 17038944 (-)
crebbpb LOC108279275,LOC107661648,LOC107553628 coding upstream 428928 17180996 ~ 17277356 (-)
G212395 NA non-coding downstream 47604 16681184 ~ 16690337 (-)
G212319 NA non-coding downstream 240709 16478891 ~ 16497232 (-)
LOC113528275 NA non-coding downstream 282094 16453560 ~ 16455847 (-)
G212018 NA non-coding downstream 697542 16039756 ~ 16040399 (-)
G212016 NA non-coding downstream 700624 16037116 ~ 16037317 (-)
G212463 NA non-coding upstream 79900 16831968 ~ 16832219 (-)
G212626 NA non-coding upstream 426460 17178528 ~ 17179748 (-)
G212637 NA non-coding upstream 532432 17284500 ~ 17284707 (-)
G212643 NA non-coding upstream 540292 17292360 ~ 17292723 (-)
G212654 NA non-coding upstream 588519 17340587 ~ 17342051 (-)
LOC113528039 LOC108276772 other downstream 139253 16572545 ~ 16598688 (-)
LOC113528178 LOC108260277,LOC108437874,LOC105905285,LOC100698953,LOC104918338,LOC103373486,LOC106518679,LOC108241369,LOC107083184,LOC103393004 other downstream 533950 16151075 ~ 16203991 (-)
rac1b rac3,rac1,RAC1,LOC106606208,LOC102788082,LOC107388169,LOC105898786,LOC108437155,LOC106601744,LOC105026138 other downstream 1751829 14978619 ~ 14986112 (-)
LOC113528445 LOC108274755 other downstream 2047809 14678750 ~ 14690132 (-)
G211151 usp36 other downstream 2216966 14520277 ~ 14520975 (-)
LOC113527915 LOC108431896,LOC108275040,LOC107695676,LOC107553625,LOC107601566,LOC101883507,LOC103358698 other upstream 9164 16761232 ~ 16765341 (-)
LOC113528519 NA other upstream 540705 17292773 ~ 17319719 (-)
G212700 NA other upstream 634143 17386211 ~ 17425901 (-)
LOC113528038 caskin2 other upstream 638118 17390186 ~ 17518527 (-)
G212750 LOC100136012,LOC107575789 other upstream 922759 17674827 ~ 17675284 (-)

Expression


Co-expression Network