yipf2 (yipf2)


Basic Information

Item Value
gene id yipf2
gene name yipf2
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 18793304 ~ 18801817 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026916083.2
ATTATGTTCTGTTGTCCTGTGTATAATAAGTGCGCCCTGTGGATAGCCCACGAGCTTAGCTCAGTCACGTGACCATGTTGTGCTACCCAGGAACTGTATCAGCGAGTAGATGACGTGGAAGACGCGCaagatcatttttttaaaccccacGTTATTTGAATATGGTCTTCTTTACTCGTTAGGTCGGCTGAGAGGCTGAGAGGACTGACTGCTCCGCTTGTCAGTCACTGCTTAACCCTGATCTGCCCTGATCTCACACCATGGCTGATGAACTGAAGTTTCAAGAGTTCGACGAGGCTACAGATCTCCTGTTTGCTGACCCGGGCGCCTCCACAATCAGCATCTCCACTGCTGGCACTGCTGGTGCAGCTGCCTCTTCCTCAGATATCAGACTGAACCTGTCAGATGATGAGGAGAACCAGCAGGAGAGCTCTGGGTTACTCGGAGGTGAGAAGCAAACCAGTGGCTTCTGGACATTTGAATACTATCAGTCTTTTTTCAACGTGGATACCGTGCAGGTGTTGGACAGGATCAAAGGATCACTTATACCTTTACCAGGACGAAATTTCGTCAAACATCACATTCGCAGTAACCCAGATTTATATGGGCCATTTTGGATATGTGTGTCTCTGGTCTTTTCTGTGGCCATTAGTGGGAACCTCTCTACCTTTCTGAGTCAGATGGGTGACCCTCACTATCACTATAGACCACAGTTCCACAGAGTGACGATTGCAGCACTTGCTGTGTTCCTGTATGCATGGCTCGTACCGCTGGGTGTGTGGGGCTTCATGACTTGGCGACAGAGCGCTGCACGACAGATGAGTGCTTACTCTTTTCTGGAgacagtgtgtgtctatggctACTCTCTCTTCATTTATATTCCTACTTCGGTATTATGGATCATTCCATTCGGATGGCTGCAGTGGCTCTTGATTCTGATTGCCATGTCAGTCTCTGGCGCTGTGTTGGTCATCACCTTTTGGCCAGCGGTTCGTGACGACACCAAAACGACAGCTTTCTCCATTATGACGGCCATTGTGCTGCTCCATGCACTGCTGGCCATCGGCTGCAAGTTGTACTTCTTCCAAACAGCAGTGCAACCATCATCACCCATGTCTCCACCGACTCCCTCTGGCTCAAATCACACAGCACTGACCAATCTGAGCAAACCAAACTAACTCACCAAAAGAGCTCGggttaggggaaaaaaaaaaaatgttgctataaaCTCCCCCTTTTTGTTATTGCACTACGGATTTAACAGCTAATAAGCAATATGGAGATGGATAGAACTTCAGCTGTCATGGACTTTAATTTGTCTTTGGGTAACTGGAAGGTAAATCTTTACTCagattataatgtattatgcaTATAGAGGTGGGAGATTTGTACATCTCTATACTTGGGTCATGAAGTTGGGATACTGATGCTCATCACGATATGCCCTGTTActataaatacagtatgaatTCATGTTGTGAATTTGCTGTTCTTTGTGAAGTGTATGGAAATTGTTTGTTCCATCAGCCTCACTTTgttaggacaaaaaaaatctaggtttgtgttaaaaacaaaaatgtaattttgggTGAAGGCTCAAATATCAATGAACTGTAAGTGAAATGTATTACATCTTGATAACTCCTGAGCTAAACACTCCTTCAACCCAACCAGGATACAGTCTCTGACATCTATAATGCGTTGAAATCAAAAATGTGATGCAAAGTAATTAACTACACTTGGGTAGCTGTGATTACACTGGTGTGTGGGTCAGTCTTTTTTCCAATTAGAAAACATtgcaaggagaaaaaaaaaaaaaaaaaaaaaaaagatcttttttgGGGCTGTTTGCAAATGTTCTGCTCAGGTTCCTTGCTAATTTTTAAGGCTCATTAACTTTATCATTACAAGGTAATCAATGACATGAAAAGCATCAGGGAGGCTGCATTAGTGCAGAAAATAAGGGAATCTGAAGGACAGATTTGGAACCCTAGTATTTCTGGgggttactttttttttctaaacaatttCACACTTGTCCAGATCTAGGAACAAGTGCCTTTAAAGTTcatactgttttttgttttgttttgtttttttattttaagaactGCTTTGGCACAAATAAAGTCTCTACCACCTGA
>XM_034309923.1
TTATGTTCTGTTGTCCTGTGTATAATAAGTGCGCCCTGTGGATAGCCCACGAGCTTAGCTCAGTCACGTGACCATGTTGTGCTACCCAGGAACTGTATCAGCGAGTAGATGACGTGGAAGACGCGCaagatcatttttttaaaccccacGTTATTTGAATATGGTCTTCTTTACTCGTTAGGTTAGTTGTGTTCAGTTTCTGAAGTTATGACTGCTTAGCTATAACTGTCATATTTCCTGTTGTGaacgagctgctgttattaaagGTCGGCTGAGAGGCTGAGAGGACTGACTGCTCCGCTTGTCAGTCACTGCTTAACCCTGATCTGCCCTGATCTCACACCATGGCTGATGAACTGAAGTTTCAAGAGTTCGACGAGGCTACAGATCTCCTGTTTGCTGACCCGGGCGCCTCCACAATCAGCATCTCCACTGCTGGCACTGCTGGTGCAGCTGCCTCTTCCTCAGATATCAGACTGAACCTGTCAGATGATGAGGAGAACCAGCAGGAGAGCTCTGGGTTACTCGGAGGTGAGAAGCAAACCAGTGGCTTCTGGACATTTGAATACTATCAGTCTTTTTTCAACGTGGATACCGTGCAGGTGTTGGACAGGATCAAAGGATCACTTATACCTTTACCAGGACGAAATTTCGTCAAACATCACATTCGCAGTAACCCAGATTTATATGGGCCATTTTGGATATGTGTGTCTCTGGTCTTTTCTGTGGCCATTAGTGGGAACCTCTCTACCTTTCTGAGTCAGATGGGTGACCCTCACTATCACTATAGACCACAGTTCCACAGAGTGACGATTGCAGCACTTGCTGTGTTCCTGTATGCATGGCTCGTACCGCTGGGTGTGTGGGGCTTCATGACTTGGCGACAGAGCGCTGCACGACAGATGAGTGCTTACTCTTTTCTGGAgacagtgtgtgtctatggctACTCTCTCTTCATTTATATTCCTACTTCGGTATTATGGATCATTCCATTCGGATGGCTGCAGTGGCTCTTGATTCTGATTGCCATGTCAGTCTCTGGCGCTGTGTTGGTCATCACCTTTTGGCCAGCGGTTCGTGACGACACCAAAACGACAGCTTTCTCCATTATGACGGCCATTGTGCTGCTCCATGCACTGCTGGCCATCGGCTGCAAGTTGTACTTCTTCCAAACAGCAGTGCAACCATCATCACCCATGTCTCCACCGACTCCCTCTGGCTCAAATCACACAGCACTGACCAATCTGAGCAAACCAAACTAACTCACCAAAAGAGCTCGggttaggggaaaaaaaaaaaatgttgctataaaCTCCCCCTTTTTGTTATTGCACTACGGATTTAACAGCTAATAAGCAATATGGAGATGGATAGAACTTCAGCTGTCATGGACTTTAATTTGTCTTTGGGTAACTGGAAGGTAAATCTTTACTCagattataatgtattatgcaTATAGAGGTGGGAGATTTGTACATCTCTATACTTGGGTCATGAAGTTGGGATACTGATGCTCATCACGATATGCCCTGTTActataaatacagtatgaatTCATGTTGTGAATTTGCTGTTCTTTGTGAAGTGTATGGAAATTGTTTGTTCCATCAGCCTCACTTTgttaggacaaaaaaaatctaggtttgtgttaaaaacaaaaatgtaattttgggTGAAGGCTCAAATATCAATGAACTGTAAGTGAAATGTATTACATCTTGATAACTCCTGAGCTAAACACTCCTTCAACCCAACCAGGATACAGTCTCTGACATCTATAATGCGTTGAAATCAAAAATGTGATGCAAAGTAATTAACTACACTTGGGTAGCTGTGATTACACTGGTGTGTGGGTCAGTCTTTTTTCCAATTAGAAAACATtgcaaggagaaaaaaaaaaaaaaaaaaaaaaaagatcttttttgGGGCTGTTTGCAAATGTTCTGCTCAGGTTCCTTGCTAATTTTTAAGGCTCATTAACTTTATCATTACAAGGTAATCAATGACATGAAAAGCATCAGGGAGGCTGCATTAGTGCAGAAAATAAGGGAATCTGAAGGACAGATTTGGAACCCTAGTATTTCTGGgggttactttttttttctaaacaatttCACACTTGTCCAGATCTAGGAACAAGTGCCTTTAAAGTTcatactgttttttgttttgttttgtttttttattttaagaactGCTTTGGCACAAATAAAGTCTCTACCACCTGA

Function

symbol description
yipf2 Predicted to act upstream of or within vesicle-mediated transport. Predicted to be located in late endosome membrane. Predicted to be integral component of membrane. Predicted to be active in Golgi apparatus. Orthologous to human YIPF2 (Yip1 domain family member 2).

NR:

description
PREDICTED: protein YIPF1

GO:

id name namespace
GO:0016020 membrane cellular_component

KEGG:

id description
K22940 YIPF1_2; protein YIPF1/2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026916083.2 False 2144 mRNA 0.43 10 18793304 18801817
XM_034309923.1 True 2228 mRNA 0.42 9 18793305 18801817

Neighbor

gene id symbol gene type direction distance location
tnrc6c1 tnrc6c,LOC107724432 coding upstream 95711 18633498 ~ 18697593 (+)
sept9a sept9,LOC108411966 coding upstream 234412 18472384 ~ 18558892 (+)
LOC113528424 NA coding upstream 342143 18449286 ~ 18451161 (+)
tac4 NA coding upstream 424715 18360781 ~ 18368589 (+)
LOC113527984 LOC108258094,LOC103035820,LOC108438916 coding upstream 729643 18062037 ~ 18063661 (+)
clpp clpp,LOC107753176,LOC107590418,LOC107689627 coding downstream 27476 18829293 ~ 18836201 (+)
rgs9a rgs9,rgs9a,LOC108278703,LOC108438013,LOC107590386,LOC107721500,LOC107719993 coding downstream 75857 18877674 ~ 18899981 (+)
engase engase coding downstream 136754 18938571 ~ 18954755 (+)
coil NA coding downstream 169581 18971398 ~ 18980644 (+)
rab11fip4a rab11fip4,rab11fip4a,LOC108274243,LOC108436969,LOC107601264,LOC107654480,LOC107719982,LOC107688103 coding downstream 180056 18981873 ~ 19026526 (+)
G213221 NA non-coding upstream 79678 18706417 ~ 18713626 (+)
G213191 NA non-coding upstream 227522 18517313 ~ 18565782 (+)
G213192 NA non-coding upstream 258960 18530359 ~ 18534344 (+)
G212903 NA non-coding upstream 329281 17964793 ~ 18464023 (+)
G212899 NA non-coding upstream 810498 17980998 ~ 17982806 (+)
G213244 NA non-coding downstream 44399 18846216 ~ 18898291 (+)
G213314 NA non-coding downstream 157213 18959030 ~ 18960740 (+)
LOC117598754 NA non-coding downstream 277645 19079462 ~ 19082157 (+)
G213475 NA non-coding downstream 305393 19107210 ~ 19161120 (+)
G213498 NA non-coding downstream 469514 19271331 ~ 19271589 (+)
zgc:163143 NA other upstream 358776 18425179 ~ 18434528 (+)
LOC113528171 NA other upstream 377957 18409841 ~ 18415347 (+)
LOC113528485 prkar1b,LOC107661853,LOC107653458 other upstream 450344 18183693 ~ 18342960 (+)
cenpx cenpx other upstream 1060298 17698673 ~ 17733006 (+)
srl srl,LOC108261333,LOC107695714,LOC107661647,LOC107718567,LOC107553668 other upstream 1680148 17087284 ~ 17113156 (+)
smim22 NA other downstream 112909 18914726 ~ 18919942 (+)
G213491 NA other downstream 342257 19144074 ~ 19145240 (+)
gng13b NA other downstream 499537 19301354 ~ 19313218 (+)
LOC113528521 tnrc6a,LOC107719974,LOC107590441,LOC107721518,LOC107654452,LOC107688138 other downstream 571419 19373236 ~ 19455034 (+)
LOC113528458 LOC108275785 other downstream 1071259 19873076 ~ 19911732 (+)

Expression


Co-expression Network