cacng5b (cacng5b,LOC108275568,LOC108437158,LOC107729207,LOC107556612,LOC107664435,LOC107698772)


Basic Information

Item Value
gene id cacng5b
gene name cacng5b,LOC108275568,LOC108437158,LOC107729207,LOC107556612,LOC107664435,LOC107698772
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 15038370 ~ 15051643 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026916124.2
TGTGACTGGAGGAGGCAGCTGGTGAAGAGGAAGGAGGTGAATGCTCTCTTGAGTTATTCTCCTCAGCTGGattttaatatataacatttcatttctgaaacAAAACCAAGCTTAACAGCTGAGTCGAAAAGCTGCTGGACTGCTAGACAGTTTTATCCACACCGGAGCTCGGGACAATCCATATTCTCCTTATCTTTCTCGAgGAGGTTGGTGGTATGACTGTGTGTGGCAGGAAAGCTCTGACCCTGCTGAGCAGTGTGTTCGCAGTGTGTGGCCTGGGCCTGCTGGGCATAGCTGTGAGCACTGATTACTGGCTCTACCTAGAGGAGGGGGTCATCCTACCCTTCAACCAGAGCACCAGCATCCACACATACCTGCATTCTGGCCTGTGGAGACTTTGCTTCCTGTCAGGAGAGGAGATGGGCCGGTGTTTCACTATAGAGTATCTTATGCCTATGAGCGTACAACTGACCAGTGAATCTACAGTCAGTGTCCTGAAGATGATTCGCACAGCCACCCCCTTCCCCCTGGTCAGCCTCTTCTTCATGTTCATCGGCTTTGTGCTCAGTAACATCGGACACATTCGCCCGCACCGCACCGTACTGGCCTTCGCTTCTGGAATCTTCTTCATCCTCTCAGGCCTTTCTCTGGTGGTGGGTCTCGTTCTTTACATCTCCAGCATCAATGACGAGATGTTGAATAGAAGTAAAAGTAATGAGGCCTTTTTCAGCTACAAATACGGCTGGTCCTTTGCCTTTGCTGCTATCTCCTTCCTGCTGACAGAGAGTGCCGGCGTCATGTCGGTCTACCTGTTCACTAAGCGCTACACAGCTGAGGAGCTGTACAGGCCGCATACAAGCTTCTACCGGCCGCGTCTCAGCAACTGCTCCGAGCACTCGACTCAGTTCCTGCAGCGCCGACACAGTCCCTCGGACATCTCCAGTGAGGCCTCACTCCAAATGAACAGCAGCTACCCAGCCCTGCTCAAGAGCCCTGAGTATGAACAAGTCTCCTCCTCACTCTGCTAAACGCAGACAGATGGACGGATGTGAAggtggacagatagacagggagATAAATGGCtaggtgggtgggtggatggaagTCATTTAGGAAAGGAATTTCCtttataaaataatgtgaaGACACCAGAAAGGTAGAGACAGCTTTTAAACTACTTAAACTCAATGGTTGTTATGACATAATCTTAGTTTTGTTGATTTCATAATAACCTGAAATCATGTTTGCGAAAGTAAACCTTGTTCACCAGCAGAGGGCAGAAACGTGTTACTGCTGACCCGCTGTTAGTGCCAAAATGCCTAACCAGCCACAAtgactggttttatttattcatacaacaattatttatacaacaatataaataaagaacatgTTTCATTACTGTGTATCTGACACCCCAACCTGTAGGTGGTAATCAGTAACAGCTGCAGTGAATGGCATCTGCATTCACTTTCCTGTTCCATCTGCTCACCTTCATAATGAGTCTCTGTGAAAAATCTGTTAAATTGCACTTGTGTCTGACTTAAGTGCAGGGATAGGGCATCAGAAAGAACAACACACATGCAATATCATGAAAACAGTAGAAAAAAAGCAATCCTGGGCCTTTATCAtttagtaaaattgtgtgtaaatataggctacaccaaactaaaaattgctgccagatttacaaacgtTCCAGTGATCCTGAAGTTCTACATATTCATGAGCGTATGTTGATGAATCGCCTATAAATTGAAAAGCGTATTCACGTTACAGCATTTAGCGACGCCCACGAAACTTCATAAAAAGCAAAGCACCCAGAGAGctgaaaaagcaaaatgaagacagaacagtgaaagaaaaggaatctcagaggcagaagtggaagttattttgccACACATCtatgacaattaaaaaaatatatcattagcAGCATAAGAGCACCTGAAAAGGTTAATATCTGAAGAcgaattacagaaaaggtggaTTAGGTATGAattaaatgaagtgaaaagaaaatggttttgACATACCAGGCACAACATTTAGGAAACTGCTATGTTTAATTGTTTCTCTGTGACTGGCCAGACATCTCTTACACTGACGTGCATAATTCAACCTCTCCCTAATCTTGGAAAAGCCAGGAGGTCATGCATCATAAGGAAACATAAAGAATTTGAGAAGAAGCCGATCATGGCACCCAGCAAACTAGGGATTATCCAGCTCATTGCAGGTTGAATCTTACCACATTGGTCACTTCTCACTCTCTGAAATGTGTCAGTACCAAGAAACTCAAGCACTGATAAATTGGACATGCTAAGGGATGGTACAAgattgttcctctttcagctgcccCCGTTAGGcatcgccacagcggatcatttgtccacgtatttgattttggcacagtttttaagTCGGATGCCTTTCCTGGTGCAGCCCTCCCCAATTtaatctgggcttgggaccggcactgagagcgcactgttgcacgcaaccccagtggcagGGGTTGGCTCCCTGGCCGGGATTCGACCCCTGGCTGCAGCGGTGAGAGtgccgtggcctaaccactagtcctccagggaccctgaaTGGCACAAGATTGTTCGGTCTAATTAGCGCTGGCTCTAGAGTGTTGCACAGCATTTAAAGAACCAATTTATaagccagctttcatcctctgaaaaaaaa

Function

symbol description
cacng5b Predicted to enable channel regulator activity and voltage-gated calcium channel activity. Predicted to be involved in several processes, including neurotransmitter receptor internalization; neurotransmitter receptor transport, postsynaptic endosome to lysosome; and postsynaptic neurotransmitter receptor diffusion trapping. Predicted to act upstream of or within calcium ion transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be part of AMPA glutamate receptor complex. Predicted to be active in postsynaptic density membrane. Orthologous to human CACNG5 (calcium voltage-gated channel auxiliary subunit gamma 5).

NR:

description
voltage-dependent calcium channel gamma-5 subunit

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026916124.2 True 2700 mRNA 0.45 6 15038370 15051643

Neighbor

gene id symbol gene type direction distance location
LOC113528182 LOC108274645,LOC108274429 coding downstream 65786 14955058 ~ 14972584 (-)
LOC113528557 LOC108260380 coding downstream 90836 14941903 ~ 14947534 (-)
amn amn coding downstream 104209 14931916 ~ 14934161 (-)
otop2 otop2 coding downstream 128975 14900833 ~ 14909395 (-)
LOC113527964 LOC108260935 coding downstream 160247 14875335 ~ 14878123 (-)
si:ch73-374l24.1 si:ch73-374l24.1,LOC108259727,LOC108437159,LOC102304961,LOC107556610,LOC102791879 coding upstream 1901 15053544 ~ 15203184 (-)
LOC113528654 NA coding upstream 420134 15471777 ~ 15471912 (-)
LOC113528505 LOC108277132 coding upstream 526811 15578454 ~ 15581065 (-)
LOC113528397 stk31 coding upstream 530961 15582604 ~ 15595204 (-)
LOC113528053 LOC108277091,LOC108277128,LOC108277120,LOC108275034 coding upstream 555801 15607444 ~ 15617384 (-)
G211363 NA non-coding downstream 1475 15035169 ~ 15036895 (-)
G211349 NA non-coding downstream 37042 15000945 ~ 15001328 (-)
G211346 NA non-coding downstream 103249 14934669 ~ 14935121 (-)
G211274 NA non-coding downstream 190914 14847252 ~ 14847456 (-)
G211269 NA non-coding downstream 194058 14827235 ~ 14844312 (-)
G211688 NA non-coding upstream 292866 15344509 ~ 15344731 (-)
G211737 NA non-coding upstream 420129 15471772 ~ 15473343 (-)
LOC113528255 NA non-coding upstream 420301 15471944 ~ 15472817 (-)
G211751 NA non-coding upstream 458054 15509697 ~ 15510283 (-)
G211773 NA non-coding upstream 495912 15547555 ~ 15547759 (-)
rac1b rac3,rac1,RAC1,LOC106606208,LOC102788082,LOC107388169,LOC105898786,LOC108437155,LOC106601744,LOC105026138 other downstream 52258 14978619 ~ 14986112 (-)
LOC113528445 LOC108274755 other downstream 348238 14678750 ~ 14690132 (-)
G211151 usp36 other downstream 517395 14520277 ~ 14520975 (-)
pecam1 LOC108279165 other downstream 1008729 14017615 ~ 14029641 (-)
LOC113528401 ppp1r27a,LOC108279187,LOC107748880,LOC107558871,LOC107654574,LOC107665625,LOC107548727,LOC107743019 other downstream 1031858 14004169 ~ 14006512 (-)
LOC113528178 LOC108260277,LOC108437874,LOC105905285,LOC100698953,LOC104918338,LOC103373486,LOC106518679,LOC108241369,LOC107083184,LOC103393004 other upstream 1099432 16151075 ~ 16203991 (-)
LOC113528039 LOC108276772 other upstream 1520902 16572545 ~ 16598688 (-)
LOC113527915 LOC108431896,LOC108275040,LOC107695676,LOC107553625,LOC107601566,LOC101883507,LOC103358698 other upstream 1709589 16761232 ~ 16765341 (-)
LOC113528519 NA other upstream 2241130 17292773 ~ 17319719 (-)
G212700 NA other upstream 2334568 17386211 ~ 17425901 (-)

Expression


Co-expression Network