lrrc4ba (lrrc4b,lrrc4ba,LOC103034410,LOC107667844,LOC107680881,LOC107551155,LOC107563987,LOC107732840)


Basic Information

Item Value
gene id lrrc4ba
gene name lrrc4b,lrrc4ba,LOC103034410,LOC107667844,LOC107680881,LOC107551155,LOC107563987,LOC107732840
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 1678312 ~ 1723798 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026916127.2
aagacagagagaaacaggacagtgaggatggaggatgttggTCATGAActcgctctctttttctctctgatggAAGGATTTTTGGTCTCCAGAAGCTAATCCTCAAGaTTTTGTCGAGTGGTGCAGACGTCCCGGTTTCAGAGCCGCTGAGTCTGAACACACACGCAACAGGAAGTCCTGCTAATGCGAAGAACACGCGAGAGATGTAATTCCACTCGGAGAAGCTTCTCGAATCCACAGAGGACCTGTGAAGACAAAGGAGATACAATATGTGTACACGAGTCGTCTGTgtgtgaaacaaaaaacaaagaaaggacaAACAGGAGACAGTAGAGTAATTAATTCACCTGaggagacaaaaagaaagaaaaacaatgtttaacTAAACTGAAATCAACATTTGGTGGTGAAGTCCCAAAACGGATATTTACCTTCTGGAATAAGTTTAatacacactcttcacacttgGAATACAGGAAGGTCATGACCCAGATGCCATGCGGATCACCACGGTGACCGGCCTTCCTAACCCCGCCCCCTTCTTTTTCCTATTGGCCCAGCTGCTGTTTTGGCTCCTCCTCCTGGGCCAAGACATCGCAGGAGCCACGTCGACCTGCCCGACACCTTGCAGCTGCTCCAATCAAGCGAGCCGAGTGATCTGTACGAGACGAAACCTGGACGAGGTTCCAGAAAATATATCCAATAACACGCGATACCTCAACTTACAGGAGAACTCGATACAGGTGATAAGATCAGATACCTTCAAGCACTTGCGACATTTGGAGATCCTCCAGCTTTCCAAGAACCAGATTCGTCAGATTGAAGTTGGTGCATTCAATGGCCTCCCGAACCTCAATACTTTGGAACTGTTTGATAACCGTCTCACGCTGGTGCCATCGCAAGCGTTCGAATATCTCAGCAAGCTTCGGGAGCTCTGGCTTCGAAACAACCCCATCGAGACTCTGCCAGGCTATGCCTTCCACCGCGTGCCCTCACTTCGCCGTCTCGATCTGGGTGAGCTAAAAAAGCTGGACTACATTTCAGACGCTGCCTTTGTTGGTCTTGTCAATCTGCGCTACCTGAACCTGGGCATGTGCGGTCTGAAGGACATCCCCAACCTGACACCTCTGATCCGgctggaggagctggagctCTCTGGAAACAGGCTGGAAATCATAAGACCTGGATCATTCCAAGGCCTGGAGTCTTTGCGCAAACTATGGCTTATGCACTCCCAGATGTCTGTCATTGAACGCAATGCCTTTGATGACCTCAAGAGTCTGGAAGAGTTGAATCTatcccacaattccttgcactCGCTGCCCCATGACCTCTTCACCCCATTGCAGAAGCTGGAGAGAGTGCACCTCAACCACAATCCCTGGGTATGTAATTGTGATGTGCTATGGCTTAGCTGGTGGCTGAAAGAAACTGTACCAAGTAACACAACTTGCTGTGCCCGGTGCCATGCACCGCCCTACCTGAAGGGCAAATACATTGGAGAGCTGGACCAAAGCCACTTCACGTGCTACGCCCCTGTTATCGTCGAGCCTCCCACTGACCTCAATGTGACTGAAGGCATGGCTGCTGAACTCAAGTGCCGTACTGGAACCTCCATGACGTCTGTAAACTGGATTACACCCAATGGAACCCTGATGACCCATGGGTCATACCGCGTCCGAATCTCTGTGCTACATGATGGAACTCTGAATTTCACAAATGTCACCTTGCGCGACACTGGTCAGTACACCTGCATGGTGACCAACTCAGCTGGCAACACCACAGCAACGGCCGTCCTGAATGTCACCGCAGCAGACACCAGTGTCAATTACACCTATTTTACTACCGTCACTGTTGAAACTGTAGAATCCACAGGTGAAGAGGATTCAGCCCTACGTTCGATCAATGAGACCATTATCCACATCCCTGGTCCTACACCTTCTGGACGTCTCTGGCCTGATGCCATCCCAACAACAGCTTCCTCTCTGTCGGTTTTTGGATCCTCATCTTCTCCCCGAGCAACCAAACCCACATTTACTGTCTCAGTCTCTGAGCCGAGCTACCCCACTGGGCTGGATGACGTAATGAAGACTACCAAGATCATCATTGGCTGCTTTGTGGCTATCACCTTCATGGCAGCTGTCATGCTTGTGGTCTTCTACAAGCTGAGGAAGCAGCACCAGTTGCACAAGCACCACGGTCCAGTGAGAGCCATCGAGATTATCAATGTGGAGGATGAGATCGGAGCCAGCGCTAGTGTCCGAGGAAGCGGGATCTCTGGTGGTTCCACCATGCCCCAGGCCGGATCCAGTGGAGGAAGCCAGAGCCTGAGGCTGCATCACCCGGAGATTGTCAACCTGCCCAACCTGGCTCGGACGGACCACCTTAACCACTACTACAAGCCCCACCACTTCAACAACAACATGATGAGTTTGGGGCTCTCTGGAAGCTCTGGGATCGgcctcaacaacaacaacaacccttGTTCCCAGGCCCAACCCACGCCGATCTCCTGTTCCCAGGTGCCCGTCTCAGTGAGCTCCATTCCATCCTCAATGCCCCTGCCTACCCTTGGCATCCATGGATCACTCAAAGGCCTAATGGGTAAAGGGCAGAACCCTCAAATCGAGCCTTTACTCTTTAAGAGTGGCTCCAAGGAGAATGTTCAAGAGACTCAgatctgagaaagagagagtgagagagagtgtgtgagagtaagGGGATAGAGAGATAAAACAAGGGAGGGAAAAATAGGAAGATGGCATGAGGGAGACAGAAACAGATGAAGTGTACTGGCTGTTCAGCCCCCGTGGGTTTGTTGTTCTCAGGAGTAACGAGCGAGGTAGACCCAGCATTGTATGACATATTACCTACACAAGAAAAAGACGTTGCTGTGAATCACTACACTGCAAtgccagagacagagagggagggagaaaaagaaagaaagacagatgccGCAGCATTTAGATTAATGCTTACCGAACCAACGCTCACTCCGATCAATGTCAAAGTGACCATCAGCAGAGCAAATGCACTCACACGTCGTTCAATAAGGTATCAATTTAATACACGATTAGTAATTATGTGCCAAACTTGCACAGATACGTGCCAAAGCAAAATCTTTGTGCATCAGCATTGCGAAGTATATCCACAGATGCTATCTCACTGAAAAGTTTAAGAACAATATATCAGACATGTCAGTGTGCATCGTTACAGCTAAGATGCTGTAAGAAAATAACTCCACACACAGTATGCAGTAAATGAGACGTTTATAAATTCGAGAGcaaaatttttatatatgtatatcgaACATACAGATGTGTTCTGAATATGTATATACAACACAAGCAGCTGAAAGTATTATATTGTGGGTGTAGGAGTgccaagaaaagaaaacaataggTCATGATTATAATTTGTTAGGTGTAGAGGTTTGCAGTAGCATTCAGGGTCGATGGATTAGACAGACCAGCACTGTGTCGAGGGCTTGTGTTTTGTTCTGATGGACTCTGCCATATTCTcgctttctctgtctttttaacACCTCGAGGtggaaggaagagaaagagagagcattcttttgtttctttttcttttctttttatttgaagGAACCTAAAGGGCAAAAGACAATTATctaaaaatctgaaaacaaaaaatgaaactgtGAAACTACacatgatatataaatatattttcattcagaGAAATAAATTATGAAgaatctttaattttttttttgttttctgaccGAAAGCCACGTCTTTGGAGGGATCAAGCGGCTGCACTTTGCCGACCTTTAGTGTGCTCACAAACGGCCGAAAGGGCCAAACGTTGGGATTTTTCTGGAGATCCTGGAGTTTCTGTTTTGACTCATTTTTAGTCCCTGAAACCCCTTTTCCCTTTTCTTGTTGCATTTTACTAACAGGGTTATTGGTAACGTGTCATGTTTTGTTCATCCTTACAGTGAAATTTATCCCAGATTCTTGTTGCAGTATGAACATTTTAGCATTACGAtgttgaattaaattgaattgtaCGGATTGAGGGGGGGAAATAAAATCACCAACACCAACAAACTATGCTAACCACAATGATAACACAGTAATAGGTAATGTAACTAAAagcaaaatgtgaatttttatcTAAATGCTGCtatacacagagagaaatagagacagaaagagggaaaagTTAAATTTTATGATGATTTGTCCCTCTATATTAAAGACGTGAATACAATTTTATGGCTATTAcatgtattataataattaaaattataattataaaaatgccTATATgtcagctttttttattttttattttaatttcagttccTTTTGTATCCAGAGGTGATGTTTGTATTTCATTGTGCTAGACGTGATTGTCACCACAGCGGATTAAATTTTTATCCCTAGcggaataaaaacaaaaaacaaaaaaatgacaccaaCTTCAGcaaacatcaaaacatcaaaatagaaaaaaaaaacacgaaggGCCTCTGATTGAGGCCTCTTTTCGACTCTGTTTT
>XM_034309684.1
gaaacaggacagtgaggatggaggatgttggTCATGAActcgctctctttttctctctgatggAAGGATTTTTGGTCTCCAGAAGCTAATCCTCAAGTAATTCCACTCGGAGAAGCTTCTCGAATCCACAGAGGACCTGTGAAGACAAAGGAGATACAATATGTGTACACGAGTCGTCTGTgtgtgaaacaaaaaacaaagaaaggacaAACAGGAGACAGTAGAGTAATTAATTCACCTGaggagacaaaaagaaagaaaaacaatgtttaacTAAACTGAAATCAACATTTGGTGGTGAAGTCCCAAAACGGATATTTACCTTCTGGAATAAGTTTAatacacactcttcacacttgGAATACAGGAAGGTCATGACCCAGATGCCATGCGGATCACCACGGTGACCGGCCTTCCTAACCCCGCCCCCTTCTTTTTCCTATTGGCCCAGCTGCTGTTTTGGCTCCTCCTCCTGGGCCAAGACATCGCAGGAGCCACGTCGACCTGCCCGACACCTTGCAGCTGCTCCAATCAAGCGAGCCGAGTGATCTGTACGAGACGAAACCTGGACGAGGTTCCAGAAAATATATCCAATAACACGCGATACCTCAACTTACAGGAGAACTCGATACAGGTGATAAGATCAGATACCTTCAAGCACTTGCGACATTTGGAGATCCTCCAGCTTTCCAAGAACCAGATTCGTCAGATTGAAGTTGGTGCATTCAATGGCCTCCCGAACCTCAATACTTTGGAACTGTTTGATAACCGTCTCACGCTGGTGCCATCGCAAGCGTTCGAATATCTCAGCAAGCTTCGGGAGCTCTGGCTTCGAAACAACCCCATCGAGACTCTGCCAGGCTATGCCTTCCACCGCGTGCCCTCACTTCGCCGTCTCGATCTGGGTGAGCTAAAAAAGCTGGACTACATTTCAGACGCTGCCTTTGTTGGTCTTGTCAATCTGCGCTACCTGAACCTGGGCATGTGCGGTCTGAAGGACATCCCCAACCTGACACCTCTGATCCGgctggaggagctggagctCTCTGGAAACAGGCTGGAAATCATAAGACCTGGATCATTCCAAGGCCTGGAGTCTTTGCGCAAACTATGGCTTATGCACTCCCAGATGTCTGTCATTGAACGCAATGCCTTTGATGACCTCAAGAGTCTGGAAGAGTTGAATCTatcccacaattccttgcactCGCTGCCCCATGACCTCTTCACCCCATTGCAGAAGCTGGAGAGAGTGCACCTCAACCACAATCCCTGGGTATGTAATTGTGATGTGCTATGGCTTAGCTGGTGGCTGAAAGAAACTGTACCAAGTAACACAACTTGCTGTGCCCGGTGCCATGCACCGCCCTACCTGAAGGGCAAATACATTGGAGAGCTGGACCAAAGCCACTTCACGTGCTACGCCCCTGTTATCGTCGAGCCTCCCACTGACCTCAATGTGACTGAAGGCATGGCTGCTGAACTCAAGTGCCGTACTGGAACCTCCATGACGTCTGTAAACTGGATTACACCCAATGGAACCCTGATGACCCATGGGTCATACCGCGTCCGAATCTCTGTGCTACATGATGGAACTCTGAATTTCACAAATGTCACCTTGCGCGACACTGGTCAGTACACCTGCATGGTGACCAACTCAGCTGGCAACACCACAGCAACGGCCGTCCTGAATGTCACCGCAGCAGACACCAGTGTCAATTACACCTATTTTACTACCGTCACTGTTGAAACTGTAGAATCCACAGGTGAAGAGGATTCAGCCCTACGTTCGATCAATGAGACCATTATCCACATCCCTGGTCCTACACCTTCTGGACGTCTCTGGCCTGATGCCATCCCAACAACAGCTTCCTCTCTGTCGGTTTTTGGATCCTCATCTTCTCCCCGAGCAACCAAACCCACATTTACTGTCTCAGTCTCTGAGCCGAGCTACCCCACTGGGCTGGATGACGTAATGAAGACTACCAAGATCATCATTGGCTGCTTTGTGGCTATCACCTTCATGGCAGCTGTCATGCTTGTGGTCTTCTACAAGCTGAGGAAGCAGCACCAGTTGCACAAGCACCACGGTCCAGTGAGAGCCATCGAGATTATCAATGTGGAGGATGAGATCGGAGCCAGCGCTAGTGTCCGAGGAAGCGGGATCTCTGGTGGTTCCACCATGCCCCAGGCCGGATCCAGTGGAGGAAGCCAGAGCCTGAGGCTGCATCACCCGGAGATTGTCAACCTGCCCAACCTGGCTCGGACGGACCACCTTAACCACTACTACAAGCCCCACCACTTCAACAACAACATGATGAGTTTGGGGCTCTCTGGAAGCTCTGGGATCGgcctcaacaacaacaacaacccttGTTCCCAGGCCCAACCCACGCCGATCTCCTGTTCCCAGGTGCCCGTCTCAGTGAGCTCCATTCCATCCTCAATGCCCCTGCCTACCCTTGGCATCCATGGATCACTCAAAGGCCTAATGGGTAAAGGGCAGAACCCTCAAATCGAGCCTTTACTCTTTAAGAGTGGCTCCAAGGAGAATGTTCAAGAGACTCAgatctgagaaagagagagtgagagagagtgtgtgagagtaagGGGATAGAGAGATAAAACAAGGGAGGGAAAAATAGGAAGATGGCATGAGGGAGACAGAAACAGATGAAGTGTACTGGCTGTTCAGCCCCCGTGGGTTTGTTGTTCTCAGGAGTAACGAGCGAGGTAGACCCAGCATTGTATGACATATTACCTACACAAGAAAAAGACGTTGCTGTGAATCACTACACTGCAAtgccagagacagagagggagggagaaaaagaaagaaagacagatgccGCAGCATTTAGATTAATGCTTACCGAACCAACGCTCACTCCGATCAATGTCAAAGTGACCATCAGCAGAGCAAATGCACTCACACGTCGTTCAATAAGGTATCAATTTAATACACGATTAGTAATTATGTGCCAAACTTGCACAGATACGTGCCAAAGCAAAATCTTTGTGCATCAGCATTGCGAAGTATATCCACAGATGCTATCTCACTGAAAAGTTTAAGAACAATATATCAGACATGTCAGTGTGCATCGTTACAGCTAAGATGCTGTAAGAAAATAACTCCACACACAGTATGCAGTAAATGAGACGTTTATAAATTCGAGAGcaaaatttttatatatgtatatcgaACATACAGATGTGTTCTGAATATGTATATACAACACAAGCAGCTGAAAGTATTATATTGTGGGTGTAGGAGTgccaagaaaagaaaacaataggTCATGATTATAATTTGTTAGGTGTAGAGGTTTGCAGTAGCATTCAGGGTCGATGGATTAGACAGACCAGCACTGTGTCGAGGGCTTGTGTTTTGTTCTGATGGACTCTGCCATATTCTcgctttctctgtctttttaacACCTCGAGGtggaaggaagagaaagagagagcattcttttgtttctttttcttttctttttatttgaagGAACCTAAAGGGCAAAAGACAATTATctaaaaatctgaaaacaaaaaatgaaactgtGAAACTACacatgatatataaatatattttcattcagaGAAATAAATTATGAAgaatctttaattttttttttgttttctgaccGAAAGCCACGTCTTTGGAGGGATCAAGCGGCTGCACTTTGCCGACCTTTAGTGTGCTCACAAACGGCCGAAAGGGCCAAACGTTGGGATTTTTCTGGAGATCCTGGAGTTTCTGTTTTGACTCATTTTTAGTCCCTGAAACCCCTTTTCCCTTTTCTTGTTGCATTTTACTAACAGGGTTATTGGTAACGTGTCATGTTTTGTTCATCCTTACAGTGAAATTTATCCCAGATTCTTGTTGCAGTATGAACATTTTAGCATTACGAtgttgaattaaattgaattgtaCGGATTGAGGGGGGGAAATAAAATCACCAACACCAACAAACTATGCTAACCACAATGATAACACAGTAATAGGTAATGTAACTAAAagcaaaatgtgaatttttatcTAAATGCTGCtatacacagagagaaatagagacagaaagagggaaaagTTAAATTTTATGATGATTTGTCCCTCTATATTAAAGACGTGAATACAATTTTATGGCTATTAcatgtattataataattaaaattataattataaaaatgccTATATgtcagctttttttattttttattttaatttcagttccTTTTGTATCCAGAGGTGATGTTTGTATTTCATTGTGCTAGACGTGATTGTCACCACAGCGGATTAAATTTTTATCCCTAGcggaataaaaacaaaaaacaaaaaaatgacaccaaCTTCAGcaaacatcaaaacatcaaaatagaaaaaaaaaacacgaaggGCCTCTGATTGAGGCCTCTTTTCGACTCTGTTTT

Function

symbol description
lrrc4ba Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in plasma membrane. Is expressed in basal plate midbrain region and nervous system. Orthologous to human LRRC4B (leucine rich repeat containing 4B).
lrrc4b Predicted to enable signaling receptor binding activity. Predicted to be involved in regulation of synapse assembly and synaptic membrane adhesion. Predicted to be located in cerebellar mossy fiber and presynaptic membrane. Predicted to be active in glutamatergic synapse and plasma membrane. Predicted to be integral component of postsynaptic density membrane.

NR:

description
PREDICTED: leucine-rich repeat-containing protein 4B

GO: NA

KEGG:

id description
K16360 LRRC4B, NGL3; netrin-G3 ligand

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026916127.2 True 4537 mRNA 0.45 4 1678312 1723798
XM_034309684.1 False 4428 mRNA 0.45 3 1678322 1723798

Neighbor

gene id symbol gene type direction distance location
med25 med25 coding upstream 20016 1631072 ~ 1658296 (+)
si:ch211-51c14.1 si:ch211-51c14.1,LOC108427330,LOC107732900,LOC107729493,LOC107551153,LOC108274951,LOC105012945 coding upstream 146326 1504878 ~ 1531986 (+)
shank1 shank1,LOC108427331,LOC107732841 coding upstream 184294 1401808 ~ 1494018 (+)
ppp1caa ppp1caa,LOC108280818,LOC105897688,LOC103034594,LOC103392690,LOC101477563,LOC103367324,LOC107378498 coding upstream 333275 1324100 ~ 1345037 (+)
coro1a LOC103035240,LOC108427335,LOC108280773,LOC107658445,LOC107729508 coding upstream 412191 1253527 ~ 1266121 (+)
emc10 emc10 coding downstream 92513 1816311 ~ 1826068 (+)
zgc:195001 LOC108274956 coding downstream 104873 1828671 ~ 1839338 (+)
tbc1d17 tbc1d17,LOC107551157,LOC107687627,LOC107729504,LOC107563983,LOC107680857 coding downstream 130944 1854742 ~ 1870170 (+)
nucb1 nucb1,LOC108434929,LOC107729549,LOC107687629,LOC107563981,LOC107732899 coding downstream 166487 1890285 ~ 1903186 (+)
slc1a9 slc1a9,LOC108278773,LOC108434930,LOC107551162,LOC107680867,LOC107729473 coding downstream 288435 2012233 ~ 2061070 (+)
G203672 NA non-coding upstream 111683 1565356 ~ 1566629 (+)
G203662 NA non-coding upstream 145267 1522226 ~ 1533045 (+)
G203660 NA non-coding upstream 177519 1446989 ~ 1500793 (+)
G203647 NA non-coding upstream 237297 1362383 ~ 1441015 (+)
G203635 LOC108280870,LOC103034911 non-coding upstream 365323 1309397 ~ 1312989 (+)
G203867 NA non-coding downstream 48831 1772629 ~ 1867011 (+)
G203885 NA non-coding downstream 101180 1824978 ~ 1825293 (+)
G203898 NA non-coding downstream 132625 1856423 ~ 1871560 (+)
G203906 NA non-coding downstream 182041 1905839 ~ 1922479 (+)
G203913 NA non-coding downstream 195225 1919023 ~ 1987215 (+)
syt3 syt3,LOC107551154,LOC107563990,LOC107680842 other upstream 58338 1561524 ~ 1619974 (+)
kmt5c LOC108280634 other upstream 316852 1353329 ~ 1361460 (+)
paqr4a paqr4,LOC101165805,LOC105897660,LOC104930707,LOC108280840,LOC107658445,LOC106606885,LOC102784286 other upstream 441110 1220494 ~ 1237202 (+)
armc5 armc5 other upstream 621978 1034336 ~ 1056334 (+)
setd1a setd1a,LOC107737760,LOC107554121,LOC107729457 other upstream 871967 778840 ~ 806345 (+)
ccndx LOC108280826 other downstream 159254 1883052 ~ 1889515 (+)
ppfia3 ppfia3,LOC107551161,LOC107687647,LOC107563979,LOC107732887,LOC107729434 other downstream 193407 1917205 ~ 1987915 (+)
rundc1 rundc1 other downstream 453885 2177683 ~ 2186164 (+)
LOC113528221 LOC108276032,LOC108276106 other downstream 1143970 2867768 ~ 2908043 (+)
pyya LOC108276154,LOC108434917 other downstream 1279810 3003608 ~ 3012859 (+)

Expression


Co-expression Network